Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Reverse (-)

6998453 .. 7000742

Gene Structure 2290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATGAGTAGTAGTGGTGTGAGAGGCATGAGGTTTCCTTTTACTCCATCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATTTACAAGTACATGGTTTCTGGCATACCAATTCCTCCTGATCTCCTCTTCTCCATCAAAAGAAGCTGCTTGGACTCTCCTCCTCTCTCTTCAAAGCTCTTCTCTCCTCACATTGGGTGGAACTGTTTTCAGATGGGCCTGGGGAGGAAGATAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTTCAAAAGAGGCATTTGCTGATTCTAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAGCAACACCACCAACATCAGCAAATTCAAACTCAAGCACATCACCAATCACCAAGATTTTCAACTCACCTTCCAATTCACTAAGCACACCCTTCCATTCACTATCTTCACTCTCACCTAATGAAAGTAGCTACAATAGTAGTAGTTCTGCTCATCTTGATGATCATCATTTCCTTTATTCAAGGCCAAACATGGGGTTTTCACAGCAAGAAAGAGGCACCTCCTTGTTTTTGGAATCTGCTTCGTACAATAATAATCCCCTGCATCCCAACTTAGAATACAGGTTTAGTTATGGGGTGAAAGAAGACGTGGATGAGCATGCATTCTTCTCAGAGCCTTCAGGGAGTGTTAGAGGCTTCTCTGGCTCTTCTTCATCTTTGGATCATCATCAAAATGAATCCAATTGGCAGCTCACAATGAGTTGTTCTAACTCCTCTTCAAAACAGAGGACGTGCTCTGCTTTACAAACAGAGCAATATCCTCATTTGCAGCTTCAGAACTTCAGTGACTCCAAAATGGAGAGAAGAGAAGAAACCCAGAGAACCATACATCACTTCTTTGATGAAGGCCCTCCCAAAGATAGAGATTCATCTTGGCTTGATTTGGATGGTAATAATAAATCTTCAAACAGTGGATCAGTTTCCACCACCAGGCTCTCAATCTCCATACCAAACTCTGCTCATGACTTCCCCATCTTCAATTCAAGAAATCATCATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

365

Amino Acids

41.3

Weight (kDa)

8.14

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	13 - 46	4e-16	QLQ
WRC	PF08879	80 - 122	2e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AclWI	GGATC	2 cut(s)	762, 1015
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	3 cut(s)	696, 851, 859
AfaI	GTAC	3 cut(s)	92, 314, 620
AfiI	CCNNNNNNNGG	4 cut(s)	194, 245, 566, 1023
AjiI	CACGTC	2 cut(s)	682, 825
AjnI	CCWGG	3 cut(s)	219, 244, 1022
AluBI	AGCT	7 cut(s)	64, 77, 147, 178, 504, 784, 865
AluI	AGCT	7 cut(s)	64, 77, 147, 178, 504, 784, 865
Alw21I	GWGCWC	2 cut(s)	72, 830
AlwI	GGATC	2 cut(s)	762, 1015
AoxI	GGCC	3 cut(s)	217, 557, 940
ApeKI	GCWGC	3 cut(s)	147, 781, 862
ApoI	RAATTY	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	217, 941
AsuHPI	GGTGA	5 cut(s)	408, 415, 432, 480, 682
BanI	GGYRCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	72, 830
BbvI	GCAGC	3 cut(s)	134, 793, 874
BccI	CCATC	6 cut(s)	55, 143, 208, 260, 974, 1073
BciT130I	CCWGG	3 cut(s)	221, 246, 1024
BclI	TGATCA	1 cut(s)	535
BisI	GCNGC	3 cut(s)	148, 782, 863
BlsI	GCNGC	3 cut(s)	149, 783, 864
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	3 cut(s)	221, 246, 1024
BmgBI	CACGTC	2 cut(s)	682, 825
BmgT120I	GGNCC	2 cut(s)	217, 941
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	3 cut(s)	221, 246, 1024
BmsI	GCATC	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	86, 391
BsaBI	GATNNNNATC	2 cut(s)	537, 759
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 245, 566, 1023
Bse8I	GATNNNNATC	2 cut(s)	537, 759
BseBI	CCWGG	3 cut(s)	221, 246, 1024
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	637, 691, 985
BseJI	GATNNNNATC	2 cut(s)	537, 759
BseLI	CCNNNNNNNGG	4 cut(s)	194, 245, 566, 1023
BseMII	CTCAG	1 cut(s)	717
BseRI	GAGGAG	5 cut(s)	116, 150, 153, 177, 796
BseXI	GCAGC	3 cut(s)	134, 793, 874
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	219, 559, 942
BshNI	GGYRCC	1 cut(s)	590
BsiHKAI	GWGCWC	2 cut(s)	72, 830
BslI	CCNNNNNNNGG	4 cut(s)	194, 245, 566, 1023
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	219, 559, 942
Bsp1286I	GDGCHC	2 cut(s)	72, 830
Bsp143I	GATC	4 cut(s)	121, 535, 754, 1007
BspANI	GGCC	3 cut(s)	219, 559, 942
BspCNI	CTCAG	1 cut(s)	716
BspHI	TCATGA	2 cut(s)	1054, 1087
BspLI	GGNNCC	1 cut(s)	592
BspPI	GGATC	2 cut(s)	762, 1015
BspQI	GCTCTTC	2 cut(s)	185, 745
BspT107I	GGYRCC	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	121, 535, 754, 1007
Bst2UI	CCWGG	3 cut(s)	221, 246, 1024
Bst4CI	ACNGT	4 cut(s)	206, 317, 347, 1004
Bst6I	CTCTTC	6 cut(s)	134, 175, 185, 745, 814, 892
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	4 cut(s)	309, 455, 646, 703
BstF5I	GGATG	3 cut(s)	637, 691, 985
BstKTI	GATC	4 cut(s)	124, 538, 757, 1010
BstMBI	GATC	4 cut(s)	121, 535, 754, 1007
BstMWI	GCNNNNNNNGC	1 cut(s)	735
BstNI	CCWGG	3 cut(s)	221, 246, 1024
BstNSI	RCATGY	2 cut(s)	331, 695
BstSCI	CCNGG	3 cut(s)	219, 244, 1022
BstV1I	GCAGC	3 cut(s)	134, 793, 874
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	219, 559, 942
BtrI	CACGTC	2 cut(s)	682, 825
BtsCI	GGATG	3 cut(s)	637, 691, 985
BtsIMutI	CAGTG	2 cut(s)	883, 1009
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	2 cut(s)	1054, 1087
Cfr13I	GGNCC	2 cut(s)	217, 941
Csp6I	GTAC	3 cut(s)	91, 313, 619
CviAII	CATG	7 cut(s)	28, 94, 328, 565, 692, 1055, 1088
CviQI	GTAC	3 cut(s)	91, 313, 619
DdeI	CTNAG	4 cut(s)	309, 455, 646, 703
DpnI	GATC	4 cut(s)	123, 537, 756, 1009
DpnII	GATC	4 cut(s)	121, 535, 754, 1007
Eam1104I	CTCTTC	6 cut(s)	134, 175, 185, 745, 814, 892
EarI	CTCTTC	6 cut(s)	134, 175, 185, 745, 814, 892
Eco57I	CTGAAG	3 cut(s)	696, 851, 859
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRII	CCWGG	3 cut(s)	219, 244, 1022
EcoT22I	ATGCAT	2 cut(s)	333, 697
FaeI	CATG	7 cut(s)	31, 97, 331, 568, 695, 1058, 1091
FatI	CATG	7 cut(s)	27, 93, 327, 564, 691, 1054, 1087
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	148, 782, 863
FokI	GGATG	3 cut(s)	624, 698, 992
Fsp4HI	GCNGC	3 cut(s)	148, 782, 863
GluI	GCNGC	3 cut(s)	148, 782, 863
HaeIII	GGCC	3 cut(s)	219, 559, 942
Hin1II	CATG	7 cut(s)	31, 97, 331, 568, 695, 1058, 1091
HinfI	GANTC	6 cut(s)	155, 305, 608, 770, 881, 959
HphI	GGTGA	5 cut(s)	408, 415, 432, 480, 682
Hpy188I	TCNGA	4 cut(s)	81, 213, 706, 870
Hpy188III	TCNNGA	6 cut(s)	119, 351, 530, 1055, 1077, 1088
HpyAV	CCTTC	5 cut(s)	243, 453, 475, 720, 932
HpyCH4III	ACNGT	4 cut(s)	206, 317, 347, 1004
HpyCH4IV	ACGT	2 cut(s)	681, 824
HpyCH4V	TGCA	5 cut(s)	255, 331, 637, 695, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	735
HpyF3I	CTNAG	4 cut(s)	309, 455, 646, 703
HpySE526I	ACGT	2 cut(s)	681, 824
Hsp92II	CATG	7 cut(s)	31, 97, 331, 568, 695, 1058, 1091
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	121, 535, 754, 1007
LguI	GCTCTTC	2 cut(s)	185, 745
Lsp1109I	GCAGC	3 cut(s)	134, 793, 874
LweI	GCATC	1 cut(s)	646
MaeII	ACGT	2 cut(s)	681, 824
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	4 cut(s)	123, 537, 756, 1009
MboI	GATC	4 cut(s)	121, 535, 754, 1007
MfeI	CAATTG	1 cut(s)	775
MhlI	GDGCHC	2 cut(s)	72, 830
MluCI	AATT	5 cut(s)	111, 397, 448, 775, 1072
MlyI	GAGTC	2 cut(s)	149, 875
Mph1103I	ATGCAT	2 cut(s)	333, 697
MslI	CAYNNNNRTG	4 cut(s)	52, 531, 765, 1089
MspR9I	CCNGG	3 cut(s)	221, 246, 1024
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	3 cut(s)	221, 246, 1024
MwoI	GCNNNNNNNGC	1 cut(s)	735
NdeII	GATC	4 cut(s)	121, 535, 754, 1007
NlaIII	CATG	7 cut(s)	31, 97, 331, 568, 695, 1058, 1091
NlaIV	GGNNCC	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	878
NsiI	ATGCAT	2 cut(s)	333, 697
NspI	RCATGY	2 cut(s)	331, 695
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	2 cut(s)	1054, 1087
PciSI	GCTCTTC	2 cut(s)	185, 745
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	4 cut(s)	305, 608, 770, 959
PkrI	GCNGC	3 cut(s)	149, 783, 864
PleI	GAGTC	2 cut(s)	149, 875
PpsI	GAGTC	2 cut(s)	149, 875
Psp6I	CCWGG	3 cut(s)	219, 244, 1022
PspGI	CCWGG	3 cut(s)	219, 244, 1022
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	2 cut(s)	217, 941
RsaI	GTAC	3 cut(s)	92, 314, 620
RsaNI	GTAC	3 cut(s)	91, 313, 619
RseI	CAYNNNNRTG	4 cut(s)	52, 531, 765, 1089
SapI	GCTCTTC	2 cut(s)	185, 745
SatI	GCNGC	3 cut(s)	148, 782, 863
Sau3AI	GATC	4 cut(s)	121, 535, 754, 1007
Sau96I	GGNCC	2 cut(s)	217, 941
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	149, 875
ScrFI	CCNGG	3 cut(s)	221, 246, 1024
SduI	GDGCHC	2 cut(s)	72, 830
SfaNI	GCATC	1 cut(s)	646
SmiMI	CAYNNNNRTG	4 cut(s)	52, 531, 765, 1089
SmlI	CTYRAG	2 cut(s)	65, 406
SmoI	CTYRAG	2 cut(s)	65, 406
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	5 cut(s)	111, 397, 448, 775, 1072
StyD4I	CCNGG	3 cut(s)	219, 244, 1022
TaaI	ACNGT	4 cut(s)	206, 317, 347, 1004
TaiI	ACGT	2 cut(s)	684, 827
TasI	AATT	5 cut(s)	111, 397, 448, 775, 1072
TatI	WGTACW	2 cut(s)	90, 312
TfiI	GAWTC	4 cut(s)	305, 608, 770, 959
TscAI	CASTG	2 cut(s)	883, 1009
TseFI	GTSAC	1 cut(s)	878
TseI	GCWGC	3 cut(s)	147, 781, 862
Tsp45I	GTSAC	1 cut(s)	878
TspDTI	ATGAA	5 cut(s)	510, 735, 783, 951, 951
TspRI	CASTG	2 cut(s)	883, 1009
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	2 cut(s)	331, 695
ZrmI	AGTACT	1 cut(s)	314
Zsp2I	ATGCAT	2 cut(s)	333, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.