Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Forward (+)

12386658 .. 12387996

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTGAACATGAGTGAGGTAAGTCACCAAAGGATCAAAACCAATGGAATATGGATGCACATAGCAGAACAAGGGACAGGGCCTCTTGTGCTTCTTCTCCATGGCTTCCCCGAAATATGGTACTCGTGGCGCCATCAAATTGTTTACTTGGCTAAACATGGCTACCATGTGGTTGCACCAGATATGAGAGGCTACGGTGACACTGACTCACCTCTCAGCCCTAGCTCATACTCTCTTCTTCACCTTGTTGGAGACCTTATTGATCTTCTTGACCATTTTGGTCAACAACAGGCATTTGTGGTGGGACATGACTATGGAGCTATTGTTGCTTGGCATCTGAGTCTGTTCCGGCCTGATAGAGTCAAGGCATTAGTTGCACTATCTGCTCCGTACTTTGAACCATCTTCAAGTATCAGGAGTATTGAATCTTTTAGGCAAGGTTTTGGTGAAGGATGTTATGTTTGTCAGTTTCAGGAACCGGGAAGGGCAGAAAGATCTTTTGCGAGATATGACTATTTGACAGTGATGAAGAAGTTCTTGCTGTATAACAAGACAGATTATCTGGTAGCTCCACCTGGGATGGAGCTTATAGATTATCTGGAGACACCAGCAAAATTGCCACCATGGATAACTGAGGAGGACCTCCAAGTCTATGCTGAAAAGTTTGAGGAGTCTGGTTTCACTGGTGCTCTCAATTATTTTCGAACCCTTGAGTCGTACTGGGAGCTAATGGGACCATGGCGAGGAAAAAGGATTAGTGTTCCAGCAAAGTTCATTGTAGGTGACAAAGATATTGGTTATGATGCTCTGGGCACCGGAGAATATGTGAAAGGAGATGTTTTCAAGAGTCTGGTACCAAACCTGGAAGTCGTAATCTTAGACGGTCACCATTTTATCCAGCAAGAGAAACCTCAGGAAGTCTCCCACGAAATTCTCTCCTTCATAAGCAAATTTTCTACAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

321

Amino Acids

36.61

Weight (kDa)

5.53

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	28 - 138	2.1e-29	alpha/beta hydrolase fold
Hydrolase_4	PF12146	29 - 139	6.6e-14	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	30 - 308	4.5e-21	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc65I	GGTACC	1 cut(s)	853
AccB1I	GGYRCC	3 cut(s)	129, 812, 853
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	930, 950
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	4 cut(s)	122, 392, 719, 855
AfiI	CCNNNNNNNGG	2 cut(s)	117, 743
AgsI	TTSAA	4 cut(s)	398, 408, 425, 844
AjnI	CCWGG	2 cut(s)	574, 861
AluBI	AGCT	5 cut(s)	225, 320, 569, 586, 727
AluI	AGCT	5 cut(s)	225, 320, 569, 586, 727
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	3 cut(s)	246, 596, 925
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	80, 350
ApoI	RAATTY	2 cut(s)	930, 950
Asp700I	GAANNNNTTC	1 cut(s)	533
Asp718I	GGTACC	1 cut(s)	853
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	3 cut(s)	80, 640, 734
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	8 cut(s)	16, 17, 201, 209, 233, 458, 794, 878
AsuII	TTCGAA	1 cut(s)	703
AvaII	GGWCC	2 cut(s)	640, 734
AxyI	CCTNAGG	1 cut(s)	912
BaeGI	GKGCMC	1 cut(s)	815
BanI	GGYRCC	3 cut(s)	129, 812, 853
BauI	CACGAG	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	691
BccI	CCATC	3 cut(s)	141, 409, 574
BciT130I	CCWGG	2 cut(s)	576, 863
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	246, 596, 925
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	957
BfoI	RGCGCY	1 cut(s)	133
BglII	AGATCT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	480, 576, 863
Bme18I	GGWCC	2 cut(s)	640, 734
BmgT120I	GGNCC	3 cut(s)	80, 640, 734
BmiI	GGNNCC	5 cut(s)	131, 477, 735, 814, 855
BmrFI	CCNGG	3 cut(s)	480, 576, 863
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	3 cut(s)	45, 343, 793
BmuI	ACTGGG	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	100, 575, 623, 737
BsaWI	WCCGGW	1 cut(s)	815
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 743
Bse1I	ACTGG	2 cut(s)	688, 725
Bse21I	CCTNAGG	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	576, 863
BseDI	CCNNGG	4 cut(s)	100, 575, 623, 737
BseGI	GGATG	3 cut(s)	60, 458, 585
BseLI	CCNNNNNNNGG	2 cut(s)	117, 743
BseMII	CTCAG	4 cut(s)	229, 329, 624, 926
BseNI	ACTGG	2 cut(s)	688, 725
BseRI	GAGGAG	2 cut(s)	650, 683
BseSI	GKGCMC	1 cut(s)	815
BshFI	GGCC	2 cut(s)	82, 352
BshNI	GGYRCC	3 cut(s)	129, 812, 853
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	3 cut(s)	349, 479, 816
BslFI	GGGAC	3 cut(s)	88, 318, 747
BslI	CCNNNNNNNGG	2 cut(s)	117, 743
BsmAI	GTCTC	3 cut(s)	246, 596, 925
BsmFI	GGGAC	3 cut(s)	88, 318, 747
BsnI	GGCC	2 cut(s)	82, 352
Bso31I	GGTCTC	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	2 cut(s)	691, 815
Bsp143I	GATC	3 cut(s)	33, 262, 494
Bsp19I	CCATGG	3 cut(s)	100, 623, 737
BspANI	GGCC	2 cut(s)	82, 352
BspCNI	CTCAG	4 cut(s)	228, 330, 625, 925
BspLI	GGNNCC	5 cut(s)	131, 477, 735, 814, 855
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	3 cut(s)	129, 812, 853
BspTNI	GGTCTC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	688, 725
BssECI	CCNNGG	4 cut(s)	100, 575, 623, 737
BssMI	GATC	3 cut(s)	33, 262, 494
BssNI	GRCGYC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	124
BssT1I	CCWWGG	3 cut(s)	100, 623, 737
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	576, 863
Bst4CI	ACNGT	3 cut(s)	197, 523, 884
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	130
BstAPI	GCANNNNNTGC	2 cut(s)	374, 383
BstBI	TTCGAA	1 cut(s)	703
BstDEI	CTNAG	5 cut(s)	215, 338, 633, 877, 912
BstDSI	CCRYGG	3 cut(s)	100, 623, 737
BstEII	GGTNACC	1 cut(s)	884
BstF5I	GGATG	3 cut(s)	60, 458, 585
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	3 cut(s)	36, 265, 497
BstMAI	GTCTC	3 cut(s)	246, 596, 925
BstMBI	GATC	3 cut(s)	33, 262, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 326, 374, 383
BstNI	CCWGG	2 cut(s)	576, 863
BstPI	GGTNACC	1 cut(s)	884
BstSCI	CCNGG	3 cut(s)	478, 574, 861
BstSFI	CTRYAG	1 cut(s)	957
BstSLI	GKGCMC	1 cut(s)	815
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
Bsu36I	CCTNAGG	1 cut(s)	912
BsuRI	GGCC	2 cut(s)	82, 352
BtgI	CCRYGG	3 cut(s)	100, 623, 737
BtsCI	GGATG	3 cut(s)	60, 458, 585
BtsIMutI	CAGTG	3 cut(s)	201, 528, 681
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	80, 640, 734
Csp6I	GTAC	4 cut(s)	121, 391, 718, 854
CviAII	CATG	7 cut(s)	10, 101, 158, 167, 308, 624, 738
CviQI	GTAC	4 cut(s)	121, 391, 718, 854
DdeI	CTNAG	5 cut(s)	215, 338, 633, 877, 912
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	3 cut(s)	35, 264, 496
DpnII	GATC	3 cut(s)	33, 262, 494
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	3 cut(s)	100, 623, 737
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	640, 734
Eco81I	CCTNAGG	1 cut(s)	912
Eco91I	GGTNACC	1 cut(s)	884
EcoO109I	RGGNCCY	2 cut(s)	80, 640
EcoO65I	GGTNACC	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	574, 861
EcoT14I	CCWWGG	3 cut(s)	100, 623, 737
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
ErhI	CCWWGG	3 cut(s)	100, 623, 737
FaeI	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 741
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	3 cut(s)	88, 318, 747
FatI	CATG	7 cut(s)	9, 100, 157, 166, 307, 623, 737
FokI	GGATG	3 cut(s)	67, 465, 592
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	82, 352
HapII	CCGG	3 cut(s)	349, 479, 816
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 741
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	284
HindII	GTYRAC	1 cut(s)	284
HinfI	GANTC	7 cut(s)	206, 340, 360, 425, 671, 713, 847
HpaII	CCGG	3 cut(s)	349, 479, 816
HphI	GGTGA	8 cut(s)	16, 17, 201, 209, 233, 458, 794, 878
Hpy166II	GTNNAC	3 cut(s)	7, 145, 284
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	6 cut(s)	269, 415, 473, 599, 844, 914
Hpy8I	GTNNAC	3 cut(s)	7, 145, 284
HpyAV	CCTTC	3 cut(s)	443, 477, 949
HpyCH4III	ACNGT	3 cut(s)	197, 523, 884
HpyCH4V	TGCA	3 cut(s)	58, 176, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 326, 374, 383
HpyF3I	CTNAG	5 cut(s)	215, 338, 633, 877, 912
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 741
HspAI	GCGC	1 cut(s)	130
KasI	GGCGCC	1 cut(s)	129
KpnI	GGTACC	1 cut(s)	857
Kzo9I	GATC	3 cut(s)	33, 262, 494
LmnI	GCTCC	5 cut(s)	317, 391, 574, 583, 724
LweI	GCATC	3 cut(s)	45, 343, 793
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	4 cut(s)	23, 197, 782, 884
MalI	GATC	3 cut(s)	35, 264, 496
MboI	GATC	3 cut(s)	33, 262, 494
MboII	GAAGA	6 cut(s)	86, 227, 230, 257, 396, 541
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	691, 815
MluCI	AATT	5 cut(s)	138, 614, 694, 930, 950
Mly113I	GGCGCC	1 cut(s)	130
MlyI	GAGTC	6 cut(s)	200, 349, 369, 680, 722, 856
MmeI	TCCRAC	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	3 cut(s)	349, 479, 816
MspR9I	CCNGG	3 cut(s)	480, 576, 863
MvaI	CCWGG	2 cut(s)	576, 863
MwoI	GCNNNNNNNGC	4 cut(s)	88, 326, 374, 383
NarI	GGCGCC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	3 cut(s)	100, 623, 737
NdeII	GATC	3 cut(s)	33, 262, 494
NlaIII	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 741
NlaIV	GGNNCC	5 cut(s)	131, 477, 735, 814, 855
NmuCI	GTSAC	4 cut(s)	23, 197, 782, 884
NspV	TTCGAA	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	425
PleI	GAGTC	6 cut(s)	200, 348, 368, 679, 721, 855
PluTI	GGCGCC	1 cut(s)	133
PpsI	GAGTC	6 cut(s)	200, 348, 368, 679, 721, 855
PpuMI	RGGWCCY	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	574, 861
PspEI	GGTNACC	1 cut(s)	884
PspGI	CCWGG	2 cut(s)	574, 861
PspN4I	GGNNCC	5 cut(s)	131, 477, 735, 814, 855
PspPI	GGNCC	3 cut(s)	80, 640, 734
PspPPI	RGGWCCY	1 cut(s)	640
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	4 cut(s)	122, 392, 719, 855
RsaNI	GTAC	4 cut(s)	121, 391, 718, 854
RseI	CAYNNNNRTG	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	33, 262, 494
Sau96I	GGNCC	3 cut(s)	80, 640, 734
SchI	GAGTC	6 cut(s)	200, 349, 369, 680, 722, 856
ScrFI	CCNGG	3 cut(s)	480, 576, 863
SduI	GDGCHC	2 cut(s)	691, 815
SfaNI	GCATC	3 cut(s)	45, 343, 793
SfcI	CTRYAG	1 cut(s)	957
SfoI	GGCGCC	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	703
SinI	GGWCC	2 cut(s)	640, 734
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	5 cut(s)	138, 614, 694, 930, 950
SspDI	GGCGCC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	478, 574, 861
StyI	CCWWGG	3 cut(s)	100, 623, 737
TaaI	ACNGT	3 cut(s)	197, 523, 884
TaqI	TCGA	1 cut(s)	703
TasI	AATT	5 cut(s)	138, 614, 694, 930, 950
TfiI	GAWTC	1 cut(s)	425
TscAI	CASTG	3 cut(s)	208, 528, 688
TseFI	GTSAC	4 cut(s)	23, 197, 782, 884
Tsp45I	GTSAC	4 cut(s)	23, 197, 782, 884
TspDTI	ATGAA	3 cut(s)	542, 763, 931
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	3 cut(s)	208, 528, 688
VpaK11BI	GGWCC	2 cut(s)	640, 734
XapI	RAATTY	2 cut(s)	930, 950
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.