Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Forward (+)

11696408 .. 11698026

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAATATGATGATGATGAATTATCAGGTTGATCACCAAAGGATCAAAACCAATGGAATATGGATGCATGTAGCAGAGAAAGGTACGGGTCCTCTTGTTCTATTGATTCATGGCTTCCCAGAATTCTGGTATGCTTGGCGCCACCAGATCAACTTCTTGGCTGACAACGGTTACCATGTCGTGGCTCCTGATTTGAGAGGCTACGGTGACTCTGACTCTCCCCTCAGCCCCAGCTCCTACACCATGATGCACATAGTTGGAGACCTCATCGGCCTAATTGACCATTTTGGTCAACAAAAGGTGTCTGTAGTAGGACATGACTGGGGAGCAGTTGCCGGGTGGTATCTGAGTTTGTTCAGGCCAGATAGAGTTATGGGGTTTGTCGCTCTAAGTGTTCCATACTATCCAAGGTCTCCGAACTGTAAAACTGTCCAATCAATCAAAAAAATCTACGGAGATGGATGTCACGTCATTCAATTCCAGGAACCGGGAAGAGCAGAGAGAGCGTTCGCAAGGTATGACTACACGACAGTGATGAAGAAGTTCTTGCTTATAACAGACAAAATGATAGCCCCTCCGGACATGGAGATCATTGATTTCCTGGAGACAAAGTGGTCATTGCCACCATGGCTAACAGAAGAGGATATCCAGGTATATGCTGAGAAATTTGAGGAATCTGGCTTCACTGGTGCTTTCAACTACTACCGTGCAATGGACCTGACTTGGGAGCTTCTTGCACCCTGGCAAGGATCAAAAATCATTGTTCCCGTGAAGTTCATAGTCGGTGACAAAGAATTTGGTTTCCAGTCTGGTGGCGCAAAGGATTTTGTGGAAGGTGATGAGTTCAAGAGCCTTGTCCCGGACCTGGAAGTGGTTATTATAGACGGACACCATTTTATTCAAGAAGAGAACCCTCAAGAAGTCTCCAACCAAATACTTTCCTTCCTGCATAAACACCCCATGGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

324

Amino Acids

37.05

Weight (kDa)

5.32

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	31 - 132	7.8e-25	alpha/beta hydrolase fold
Hydrolase_4	PF12146	32 - 139	8.8e-11	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	33 - 309	3.9e-18	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AasI	GACNNNNNNGTC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccIII	TCCGGA	1 cut(s)	577
AclWI	GGATC	2 cut(s)	50, 757
AcsI	RAATTY	3 cut(s)	122, 665, 794
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	8 cut(s)	181, 487, 712, 724, 746, 859, 865, 871
AgsI	TTSAA	4 cut(s)	476, 697, 847, 902
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	5 cut(s)	480, 600, 648, 740, 864
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	2 cut(s)	234, 730
AluI	AGCT	2 cut(s)	234, 730
Alw26I	GTCTC	4 cut(s)	255, 417, 599, 928
AlwI	GGATC	2 cut(s)	50, 757
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	2 cut(s)	271, 359
ApoI	RAATTY	3 cut(s)	122, 665, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	2 cut(s)	141, 818
AspS9I	GGNCC	3 cut(s)	89, 715, 862
AsuC2I	CCSGG	3 cut(s)	337, 489, 860
AsuHPI	GGTGA	4 cut(s)	26, 218, 797, 848
AvaII	GGWCC	3 cut(s)	89, 715, 862
BanI	GGYRCC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	5 cut(s)	482, 602, 650, 742, 866
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	337, 489, 860
BcoDI	GTCTC	4 cut(s)	255, 417, 599, 928
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	628
Bme1390I	CCNGG	8 cut(s)	337, 482, 489, 602, 650, 742, 860, 866
Bme18I	GGWCC	3 cut(s)	89, 715, 862
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	89, 715, 862
BmiI	GGNNCC	4 cut(s)	90, 140, 186, 486
BmrFI	CCNGG	8 cut(s)	337, 482, 489, 602, 650, 742, 860, 866
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	54, 237
BmuI	ACTGGG	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	900
BpuMI	CCSGG	3 cut(s)	337, 489, 860
BsaHI	GRCGYC	1 cut(s)	139
BsaI	GGTCTC	2 cut(s)	255, 417
BsaJI	CCNNGG	4 cut(s)	407, 626, 740, 960
BsaWI	WCCGGW	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	8 cut(s)	181, 487, 712, 724, 746, 859, 865, 871
Bse1I	ACTGG	3 cut(s)	326, 691, 805
Bse3DI	GCAATG	2 cut(s)	617, 717
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	5 cut(s)	482, 602, 650, 742, 866
BseDI	CCNNGG	4 cut(s)	407, 626, 740, 960
BseGI	GGATG	2 cut(s)	69, 467
BseLI	CCNNNNNNNGG	8 cut(s)	181, 487, 712, 724, 746, 859, 865, 871
BseMI	GCAATG	2 cut(s)	617, 717
BseMII	CTCAG	3 cut(s)	238, 338, 651
BseNI	ACTGG	3 cut(s)	326, 691, 805
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	273, 361
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	336, 488, 578, 860
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	8 cut(s)	181, 487, 712, 724, 746, 859, 865, 871
BsmAI	GTCTC	4 cut(s)	255, 417, 599, 928
BsmFI	GGGAC	1 cut(s)	842
BsnI	GGCC	2 cut(s)	273, 361
Bso31I	GGTCTC	2 cut(s)	255, 417
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
Bsp19I	CCATGG	2 cut(s)	626, 960
BspANI	GGCC	2 cut(s)	273, 361
BspCNI	CTCAG	3 cut(s)	237, 339, 652
BspEI	TCCGGA	1 cut(s)	577
BspLI	GGNNCC	4 cut(s)	90, 140, 186, 486
BspPI	GGATC	2 cut(s)	50, 757
BspQI	GCTCTTC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	138
BspTNI	GGTCTC	2 cut(s)	255, 417
BsrDI	GCAATG	2 cut(s)	617, 717
BsrI	ACTGG	3 cut(s)	326, 691, 805
BssECI	CCNNGG	4 cut(s)	407, 626, 740, 960
BssMI	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	3 cut(s)	407, 626, 960
Bst2UI	CCWGG	5 cut(s)	482, 602, 650, 742, 866
Bst4CI	ACNGT	6 cut(s)	170, 206, 422, 430, 532, 707
Bst6I	CTCTTC	3 cut(s)	487, 633, 900
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	4 cut(s)	224, 347, 389, 660
BstDSI	CCRYGG	2 cut(s)	626, 960
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	69, 467
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 818
BstKTI	GATC	6 cut(s)	34, 45, 150, 591, 752, 967
BstMAI	GTCTC	4 cut(s)	255, 417, 599, 928
BstMBI	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 628
BstNI	CCWGG	5 cut(s)	482, 602, 650, 742, 866
BstNSI	RCATGY	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	8 cut(s)	335, 480, 487, 600, 648, 740, 858, 864
BstSFI	CTRYAG	1 cut(s)	306
BstXI	CCANNNNNNTGG	2 cut(s)	126, 812
BsuRI	GGCC	2 cut(s)	273, 361
BtgI	CCRYGG	2 cut(s)	626, 960
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	69, 467
BtsIMutI	CAGTG	2 cut(s)	537, 684
CfoI	GCGC	2 cut(s)	141, 818
Cfr13I	GGNCC	3 cut(s)	89, 715, 862
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	8 cut(s)	68, 110, 176, 244, 317, 583, 627, 961
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	4 cut(s)	224, 347, 389, 660
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	6 cut(s)	33, 44, 149, 590, 751, 966
DpnII	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
DrdI	GACNNNNNNGTC	1 cut(s)	613
DseDI	GACNNNNNNGTC	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	487, 633, 900
EarI	CTCTTC	3 cut(s)	487, 633, 900
Eco130I	CCWWGG	3 cut(s)	407, 626, 960
Eco31I	GGTCTC	2 cut(s)	255, 417
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	3 cut(s)	89, 715, 862
Eco91I	GGTNACC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	5 cut(s)	480, 600, 648, 740, 864
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	3 cut(s)	407, 626, 960
EcoT22I	ATGCAT	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
ErhI	CCWWGG	3 cut(s)	407, 626, 960
FaeI	CATG	8 cut(s)	71, 113, 179, 247, 320, 586, 630, 964
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	8 cut(s)	67, 109, 175, 243, 316, 582, 626, 960
FbaI	TGATCA	1 cut(s)	31
FokI	GGATG	2 cut(s)	76, 474
GlaI	GCGC	2 cut(s)	140, 817
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	623
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	273, 361
HapII	CCGG	4 cut(s)	336, 488, 578, 860
HhaI	GCGC	2 cut(s)	141, 818
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	8 cut(s)	71, 113, 179, 247, 320, 586, 630, 964
Hin6I	GCGC	2 cut(s)	139, 816
HinP1I	GCGC	2 cut(s)	139, 816
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	106, 209, 215, 674
HpaII	CCGG	4 cut(s)	336, 488, 578, 860
HphI	GGTGA	4 cut(s)	26, 218, 797, 848
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	214, 348, 417
Hpy188III	TCNNGA	5 cut(s)	188, 578, 847, 902, 917
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	827, 952
HpyCH4III	ACNGT	6 cut(s)	170, 206, 422, 430, 532, 707
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	5 cut(s)	67, 250, 710, 737, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 628
HpyF3I	CTNAG	4 cut(s)	224, 347, 389, 660
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	8 cut(s)	71, 113, 179, 247, 320, 586, 630, 964
HspAI	GCGC	2 cut(s)	139, 816
KasI	GGCGCC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
LguI	GCTCTTC	1 cut(s)	487
LmnI	GCTCC	4 cut(s)	190, 239, 326, 727
LweI	GCATC	2 cut(s)	54, 237
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	4 cut(s)	170, 206, 464, 785
MalI	GATC	6 cut(s)	33, 44, 149, 590, 751, 966
MboI	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
MboII	GAAGA	4 cut(s)	504, 550, 650, 917
MluCI	AATT	6 cut(s)	19, 122, 276, 476, 665, 794
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	203, 209
MmeI	TCCRAC	2 cut(s)	238, 951
MnlI	CCTC	8 cut(s)	102, 191, 233, 275, 585, 634, 664, 924
Mph1103I	ATGCAT	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	542
MslI	CAYNNNNRTG	2 cut(s)	245, 530
MspI	CCGG	4 cut(s)	336, 488, 578, 860
MspR9I	CCNGG	8 cut(s)	337, 482, 489, 602, 650, 742, 860, 866
MvaI	CCWGG	5 cut(s)	482, 602, 650, 742, 866
MwoI	GCNNNNNNNGC	2 cut(s)	503, 628
NarI	GGCGCC	1 cut(s)	139
NciI	CCSGG	3 cut(s)	337, 489, 860
NcoI	CCATGG	2 cut(s)	626, 960
NdeII	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
NlaIII	CATG	8 cut(s)	71, 113, 179, 247, 320, 586, 630, 964
NlaIV	GGNNCC	4 cut(s)	90, 140, 186, 486
NmuCI	GTSAC	3 cut(s)	206, 464, 785
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	2 cut(s)	106, 674
PflMI	CCANNNNNTGG	1 cut(s)	181
PfoI	TCCNGGA	3 cut(s)	480, 600, 858
PleI	GAGTC	2 cut(s)	203, 209
PluTI	GGCGCC	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	203, 209
PpuMI	RGGWCCY	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	5 cut(s)	480, 600, 648, 740, 864
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	5 cut(s)	480, 600, 648, 740, 864
PspN4I	GGNNCC	4 cut(s)	90, 140, 186, 486
PspPI	GGNCC	3 cut(s)	89, 715, 862
PspPPI	RGGWCCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	245, 530
SapI	GCTCTTC	1 cut(s)	487
Sau3AI	GATC	6 cut(s)	31, 42, 147, 588, 749, 964
Sau96I	GGNCC	3 cut(s)	89, 715, 862
SchI	GAGTC	2 cut(s)	203, 209
ScrFI	CCNGG	8 cut(s)	337, 482, 489, 602, 650, 742, 860, 866
SfaNI	GCATC	2 cut(s)	54, 237
SfcI	CTRYAG	1 cut(s)	306
SfoI	GGCGCC	1 cut(s)	140
SinI	GGWCC	3 cut(s)	89, 715, 862
SmiMI	CAYNNNNRTG	2 cut(s)	245, 530
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
Sse9I	AATT	6 cut(s)	19, 122, 276, 476, 665, 794
SspDI	GGCGCC	1 cut(s)	138
StyD4I	CCNGG	8 cut(s)	335, 480, 487, 600, 648, 740, 858, 864
StyI	CCWWGG	3 cut(s)	407, 626, 960
TaaI	ACNGT	6 cut(s)	170, 206, 422, 430, 532, 707
TaiI	ACGT	1 cut(s)	471
TasI	AATT	6 cut(s)	19, 122, 276, 476, 665, 794
TfiI	GAWTC	2 cut(s)	106, 674
TscAI	CASTG	2 cut(s)	537, 691
TseFI	GTSAC	3 cut(s)	206, 464, 785
Tsp45I	GTSAC	3 cut(s)	206, 464, 785
TspDTI	ATGAA	5 cut(s)	17, 32, 98, 551, 766
TspGWI	ACGGA	2 cut(s)	468, 900
TspRI	CASTG	2 cut(s)	537, 691
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	3 cut(s)	89, 715, 862
XapI	RAATTY	3 cut(s)	122, 665, 794
XceI	RCATGY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.