Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Reverse (-)

80408043 .. 80410486

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAATATGATGATGATGAATTATCAGGTTGATCACCAAAGGATCAAAACCAATGGAATATGGATGCATGTAGCAGAGAAAGGTACGGGTCCTCTTGTTCTATTGATTCATGGCTTCCCAGAATTCTGGTATGCTTGGCGCCACCAGATCAACTTCTTGGCTGACAACGGTTACCATGTCGTGGCTCCTGATTTGAGAGGCTATGGTGACTCTGACTCTCCCCTCAGCCCCAGCTCATACACCATGATGCACATAGTTGGAGACCTCATCGGCCTAATTGACCATTTTGGTCAACAAAAGAAGGTGTATGTAGTAGGACATGACTGGGGAGCAGTTGCCGGGTGGTATCTGAGTTTGTTCAGGCCAGATAGAGCTATGGGGTTTGTCGCTCTAAGTGTTCCATACTATCCAAGGTCTCCGAACTGTAAAACTGTCCAATCAATCAAAAAAATCTACGGAGATGGATGTCATGTCATTCAATTCCAGAAGGAACCGGGAAGAGCAGAGAGAGCGTTCGCGAGGTATGACTACACGACAGTGATGAAGAAATTCTTGCTTATAACCGACAAAATGATAGCCCCTCCGGACATGGAGATCATTGATTTCCTGGAGACAAAGTGGTCATTGCCACCATGGCTAACAGAAGAGGATATCCAAGTGTATGCTGAGAAATTTGAGGAATCTGGCTTCACTGGTGCTTTCAACTACTACCGTGCAATGGACCTGACTTGGGAGCTTCTTGCACCCTGGCAAGGATCAAAAATCACAGTTCCCGTGAAGTTCATAGTCGGTGACAAAGAATTTGGTTTCCAGTCTGGTGGCGCAAAGGATTTTGTGGAAGGTGATGAGTTCAAGAGCCTTGTCCCGGACCTGGAAGTGGTTATTATAGACGGACACCATTTTATTCAAGAAGAGAACCCTCAAGAAGTCTCCAACCAAATACTTTCCTTCCTGCGTAAACACCCCATGGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

325

Amino Acids

37.36

Weight (kDa)

5.53

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	31 - 133	2.3e-23	alpha/beta hydrolase fold
Hydrolase_4	PF12146	32 - 139	2e-11	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	33 - 311	1.1e-18	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AasI	GACNNNNNNGTC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	583
AclWI	GGATC	2 cut(s)	50, 763
AcsI	RAATTY	4 cut(s)	122, 548, 671, 800
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	7 cut(s)	181, 718, 730, 752, 865, 871, 877
AgsI	TTSAA	4 cut(s)	479, 703, 853, 908
AjnI	CCWGG	3 cut(s)	606, 746, 870
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	3 cut(s)	234, 374, 736
AluI	AGCT	3 cut(s)	234, 374, 736
Alw26I	GTCTC	4 cut(s)	255, 420, 605, 934
AlwI	GGATC	2 cut(s)	50, 763
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	2 cut(s)	271, 362
ApoI	RAATTY	4 cut(s)	122, 548, 671, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	141, 824
AspS9I	GGNCC	3 cut(s)	89, 721, 868
AsuC2I	CCSGG	3 cut(s)	340, 495, 866
AsuHPI	GGTGA	4 cut(s)	26, 218, 803, 854
AvaII	GGWCC	3 cut(s)	89, 721, 868
BanI	GGYRCC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	3 cut(s)	608, 748, 872
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	340, 495, 866
BcoDI	GTCTC	4 cut(s)	255, 420, 605, 934
BfoI	RGCGCY	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	634
Bme1390I	CCNGG	6 cut(s)	340, 495, 608, 748, 866, 872
Bme18I	GGWCC	3 cut(s)	89, 721, 868
BmgT120I	GGNCC	3 cut(s)	89, 721, 868
BmiI	GGNNCC	4 cut(s)	90, 140, 186, 492
BmrFI	CCNGG	6 cut(s)	340, 495, 608, 748, 866, 872
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	54, 237
BmuI	ACTGGG	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	906
BpuMI	CCSGG	3 cut(s)	340, 495, 866
BsaHI	GRCGYC	1 cut(s)	139
BsaI	GGTCTC	2 cut(s)	255, 420
BsaJI	CCNNGG	4 cut(s)	410, 632, 746, 966
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	7 cut(s)	181, 718, 730, 752, 865, 871, 877
Bse1I	ACTGG	3 cut(s)	329, 697, 811
Bse3DI	GCAATG	2 cut(s)	623, 723
BseAI	TCCGGA	1 cut(s)	583
BseBI	CCWGG	3 cut(s)	608, 748, 872
BseDI	CCNNGG	4 cut(s)	410, 632, 746, 966
BseGI	GGATG	2 cut(s)	69, 470
BseLI	CCNNNNNNNGG	7 cut(s)	181, 718, 730, 752, 865, 871, 877
BseMI	GCAATG	2 cut(s)	623, 723
BseMII	CTCAG	3 cut(s)	238, 341, 657
BseNI	ACTGG	3 cut(s)	329, 697, 811
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	273, 364
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	339, 494, 584, 866
BslFI	GGGAC	1 cut(s)	848
BslI	CCNNNNNNNGG	7 cut(s)	181, 718, 730, 752, 865, 871, 877
BsmAI	GTCTC	4 cut(s)	255, 420, 605, 934
BsmFI	GGGAC	1 cut(s)	848
BsnI	GGCC	2 cut(s)	273, 364
Bso31I	GGTCTC	2 cut(s)	255, 420
Bsp13I	TCCGGA	1 cut(s)	583
Bsp143I	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
Bsp19I	CCATGG	2 cut(s)	632, 966
Bsp68I	TCGCGA	1 cut(s)	518
BspANI	GGCC	2 cut(s)	273, 364
BspCNI	CTCAG	3 cut(s)	237, 342, 658
BspEI	TCCGGA	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	518
BspLI	GGNNCC	4 cut(s)	90, 140, 186, 492
BspPI	GGATC	2 cut(s)	50, 763
BspQI	GCTCTTC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	138
BspTNI	GGTCTC	2 cut(s)	255, 420
BsrDI	GCAATG	2 cut(s)	623, 723
BsrI	ACTGG	3 cut(s)	329, 697, 811
BssECI	CCNNGG	4 cut(s)	410, 632, 746, 966
BssMI	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	3 cut(s)	410, 632, 966
Bst2UI	CCWGG	3 cut(s)	608, 748, 872
Bst4CI	ACNGT	6 cut(s)	170, 425, 433, 538, 713, 769
Bst6I	CTCTTC	3 cut(s)	493, 639, 906
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	4 cut(s)	224, 350, 392, 666
BstDSI	CCRYGG	2 cut(s)	632, 966
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	69, 470
BstFNI	CGCG	1 cut(s)	518
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 824
BstKTI	GATC	6 cut(s)	34, 45, 150, 597, 758, 973
BstMAI	GTCTC	4 cut(s)	255, 420, 605, 934
BstMBI	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 634
BstNI	CCWGG	3 cut(s)	608, 748, 872
BstNSI	RCATGY	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	6 cut(s)	338, 493, 606, 746, 864, 870
BstUI	CGCG	1 cut(s)	518
BstXI	CCANNNNNNTGG	2 cut(s)	126, 818
BsuRI	GGCC	2 cut(s)	273, 364
BtgI	CCRYGG	2 cut(s)	632, 966
BtsCI	GGATG	2 cut(s)	69, 470
BtsIMutI	CAGTG	2 cut(s)	543, 690
BtuMI	TCGCGA	1 cut(s)	518
CfoI	GCGC	2 cut(s)	141, 824
Cfr13I	GGNCC	3 cut(s)	89, 721, 868
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	9 cut(s)	68, 110, 176, 244, 320, 470, 589, 633, 967
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	4 cut(s)	224, 350, 392, 666
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	6 cut(s)	33, 44, 149, 596, 757, 972
DpnII	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
DrdI	GACNNNNNNGTC	1 cut(s)	619
DseDI	GACNNNNNNGTC	1 cut(s)	619
Eam1104I	CTCTTC	3 cut(s)	493, 639, 906
EarI	CTCTTC	3 cut(s)	493, 639, 906
Eco130I	CCWWGG	3 cut(s)	410, 632, 966
Eco31I	GGTCTC	2 cut(s)	255, 420
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	3 cut(s)	89, 721, 868
Eco91I	GGTNACC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	606, 746, 870
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	3 cut(s)	410, 632, 966
EcoT22I	ATGCAT	1 cut(s)	69
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
ErhI	CCWWGG	3 cut(s)	410, 632, 966
FaeI	CATG	9 cut(s)	71, 113, 179, 247, 323, 473, 592, 636, 970
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	9 cut(s)	67, 109, 175, 243, 319, 469, 588, 632, 966
FbaI	TGATCA	1 cut(s)	31
FokI	GGATG	2 cut(s)	76, 477
GlaI	GCGC	2 cut(s)	140, 823
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	273, 364
HapII	CCGG	4 cut(s)	339, 494, 584, 866
HhaI	GCGC	2 cut(s)	141, 824
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	9 cut(s)	71, 113, 179, 247, 323, 473, 592, 636, 970
Hin6I	GCGC	2 cut(s)	139, 822
HinP1I	GCGC	2 cut(s)	139, 822
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	106, 209, 215, 680
HpaII	CCGG	4 cut(s)	339, 494, 584, 866
HphI	GGTGA	4 cut(s)	26, 218, 803, 854
Hpy166II	GTNNAC	2 cut(s)	293, 959
Hpy188I	TCNGA	3 cut(s)	214, 351, 420
Hpy188III	TCNNGA	7 cut(s)	188, 484, 517, 584, 853, 908, 923
Hpy8I	GTNNAC	2 cut(s)	293, 959
HpyAV	CCTTC	4 cut(s)	295, 481, 833, 958
HpyCH4III	ACNGT	6 cut(s)	170, 425, 433, 538, 713, 769
HpyCH4V	TGCA	4 cut(s)	67, 250, 716, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 634
HpyF3I	CTNAG	4 cut(s)	224, 350, 392, 666
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	9 cut(s)	71, 113, 179, 247, 323, 473, 592, 636, 970
HspAI	GCGC	2 cut(s)	139, 822
KasI	GGCGCC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	3 cut(s)	190, 329, 733
LweI	GCATC	2 cut(s)	54, 237
MaeIII	GTNAC	3 cut(s)	170, 206, 791
MalI	GATC	6 cut(s)	33, 44, 149, 596, 757, 972
MboI	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
MboII	GAAGA	4 cut(s)	510, 556, 656, 923
MluCI	AATT	7 cut(s)	19, 122, 276, 479, 548, 671, 800
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	203, 209
MmeI	TCCRAC	2 cut(s)	238, 957
MnlI	CCTC	9 cut(s)	102, 191, 233, 275, 513, 591, 640, 670, 930
Mph1103I	ATGCAT	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	548
MslI	CAYNNNNRTG	2 cut(s)	245, 536
MspI	CCGG	4 cut(s)	339, 494, 584, 866
MspR9I	CCNGG	6 cut(s)	340, 495, 608, 748, 866, 872
MvaI	CCWGG	3 cut(s)	608, 748, 872
MvnI	CGCG	1 cut(s)	518
MwoI	GCNNNNNNNGC	2 cut(s)	509, 634
NarI	GGCGCC	1 cut(s)	139
NciI	CCSGG	3 cut(s)	340, 495, 866
NcoI	CCATGG	2 cut(s)	632, 966
NdeII	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
NlaIII	CATG	9 cut(s)	71, 113, 179, 247, 323, 473, 592, 636, 970
NlaIV	GGNNCC	4 cut(s)	90, 140, 186, 492
NmuCI	GTSAC	2 cut(s)	206, 791
NruI	TCGCGA	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	106, 680
PflMI	CCANNNNNTGG	1 cut(s)	181
PfoI	TCCNGGA	2 cut(s)	606, 864
PleI	GAGTC	2 cut(s)	203, 209
PluTI	GGCGCC	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	203, 209
PpuMI	RGGWCCY	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	3 cut(s)	606, 746, 870
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	606, 746, 870
PspN4I	GGNNCC	4 cut(s)	90, 140, 186, 492
PspPI	GGNCC	3 cut(s)	89, 721, 868
PspPPI	RGGWCCY	1 cut(s)	89
RruI	TCGCGA	1 cut(s)	518
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	245, 536
SapI	GCTCTTC	1 cut(s)	493
Sau3AI	GATC	6 cut(s)	31, 42, 147, 594, 755, 970
Sau96I	GGNCC	3 cut(s)	89, 721, 868
SchI	GAGTC	2 cut(s)	203, 209
ScrFI	CCNGG	6 cut(s)	340, 495, 608, 748, 866, 872
SfaNI	GCATC	2 cut(s)	54, 237
SfoI	GGCGCC	1 cut(s)	140
SinI	GGWCC	3 cut(s)	89, 721, 868
SmiMI	CAYNNNNRTG	2 cut(s)	245, 536
SmlI	CTYRAG	1 cut(s)	921
SmoI	CTYRAG	1 cut(s)	921
Sse9I	AATT	7 cut(s)	19, 122, 276, 479, 548, 671, 800
SspDI	GGCGCC	1 cut(s)	138
StyD4I	CCNGG	6 cut(s)	338, 493, 606, 746, 864, 870
StyI	CCWWGG	3 cut(s)	410, 632, 966
TaaI	ACNGT	6 cut(s)	170, 425, 433, 538, 713, 769
TasI	AATT	7 cut(s)	19, 122, 276, 479, 548, 671, 800
TfiI	GAWTC	2 cut(s)	106, 680
TscAI	CASTG	2 cut(s)	543, 697
TseFI	GTSAC	2 cut(s)	206, 791
Tsp45I	GTSAC	2 cut(s)	206, 791
TspDTI	ATGAA	5 cut(s)	17, 32, 98, 557, 772
TspGWI	ACGGA	2 cut(s)	471, 906
TspRI	CASTG	2 cut(s)	543, 697
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	3 cut(s)	89, 721, 868
XapI	RAATTY	4 cut(s)	122, 548, 671, 800
XceI	RCATGY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.