Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Reverse (-)

80406509 .. 80407891

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTGAACATGAGTGAGGTAAGTCACCAAAGGATCAAAACCAATGGAATATGGATGCACATAGCAGAACAAGGGACAGGGCCTCTTGTGCTTCTTCTCCATGGCTTCCCCGAAATATGGTACTCGTGGCGCCATCAAATTGGTTACTTGGCTAAACATGGCTACCATGTGGTTGCACCGGATATGAGAGGCTATGGTGACACTGACTCACCTCTCAGCCCTAGCTCATACTCTCTTCTTCACCTTGTTGGAGACCTTATTGATATTCTTGACCATTTTGGTCAACAACAGGCATTTGTGGTGGGACATGACTATGGAGCTATTGTTGCTTGGCATCTGAGTCTGTTCCGGCCTGATAGAGTCAAGGCATTGGTTGCACTATCTGCTCCGTACTTTGAACCATCTTCAAGTATCAGGAGTATTGAATCTTTCAGGCAAGGTTTTGGTGAAGGATGTTATGTTTGTCAGTTTCAGGAACCGGGAAGGGCAGAAAGATCTTTTGCGAGATATGACTATTTGACAGTGATGAAGAAGTTCTTGTTGTATAACAAGACAGATTATCTGGTAGCTCCACCTGGGATGGAGCTTATAGATTATCTGGAGACACCAGCCAAATTGCCACCATGGATAACTGAGGAGGACCTCCAAGTCTATGCTGAAAAGTTTGAGGAATCTGGTTTCACTGGTGCTCTCAATTATTTTCGAACCCTTGAGTCATACAACTTTGCTAATCTTACCCGGTTCGTTGGAAATGAAAACAGGTACTGGGAGCTAATGGGACCATGGCGAGGAAAAAGGATTAGTGTTCCAGCAAAGTTCATTGTAGGTGACAAAGATATTGGTTATGATGCTCTGGGCACCGGAGAATATGTGAAAGGAGATGTTTTCAAGAGTCTGGTACCGAACCTGGAAGTCGTAATCTTAGACGGTCACCATTTTATCCAGCAAGAGAAACCTCAGGAAGTCTCCCACGAAATTCTCTCCTTCATAAGCAAATTTTCTACAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

336

Amino Acids

38.36

Weight (kDa)

5.63

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	28 - 138	2.8e-29	alpha/beta hydrolase fold
Hydrolase_4	PF12146	29 - 139	7e-14	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	30 - 323	4.5e-20	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc65I	GGTACC	1 cut(s)	898
AccB1I	GGYRCC	3 cut(s)	129, 857, 898
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	975, 995
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	4 cut(s)	122, 392, 764, 900
AfiI	CCNNNNNNNGG	2 cut(s)	117, 788
AgsI	TTSAA	4 cut(s)	398, 408, 425, 889
AjnI	CCWGG	2 cut(s)	574, 906
AluBI	AGCT	5 cut(s)	225, 320, 569, 586, 772
AluI	AGCT	5 cut(s)	225, 320, 569, 586, 772
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	3 cut(s)	246, 596, 970
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	765
AoxI	GGCC	2 cut(s)	80, 350
ApoI	RAATTY	2 cut(s)	975, 995
Asp700I	GAANNNNTTC	1 cut(s)	533
Asp718I	GGTACC	1 cut(s)	898
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	3 cut(s)	80, 640, 779
AsuC2I	CCSGG	2 cut(s)	480, 739
AsuHPI	GGTGA	8 cut(s)	16, 17, 201, 209, 233, 458, 839, 923
AsuII	TTCGAA	1 cut(s)	703
AvaII	GGWCC	2 cut(s)	640, 779
AxyI	CCTNAGG	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	860
BanI	GGYRCC	3 cut(s)	129, 857, 898
BauI	CACGAG	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	691
BccI	CCATC	3 cut(s)	141, 409, 574
BciT130I	CCWGG	2 cut(s)	576, 908
BcnI	CCSGG	2 cut(s)	480, 739
BcoDI	GTCTC	3 cut(s)	246, 596, 970
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	1002
BfoI	RGCGCY	1 cut(s)	133
BglII	AGATCT	1 cut(s)	494
Bme1390I	CCNGG	4 cut(s)	480, 576, 739, 908
Bme18I	GGWCC	2 cut(s)	640, 779
BmgT120I	GGNCC	3 cut(s)	80, 640, 779
BmiI	GGNNCC	5 cut(s)	131, 477, 780, 859, 900
BmrFI	CCNGG	4 cut(s)	480, 576, 739, 908
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	3 cut(s)	45, 343, 838
BmuI	ACTGGG	1 cut(s)	775
BpmI	CTGGAG	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	2 cut(s)	480, 739
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	100, 575, 623, 782
BsaWI	WCCGGW	2 cut(s)	178, 860
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 788
Bse1I	ACTGG	2 cut(s)	688, 770
Bse21I	CCTNAGG	1 cut(s)	957
BseBI	CCWGG	2 cut(s)	576, 908
BseDI	CCNNGG	4 cut(s)	100, 575, 623, 782
BseGI	GGATG	3 cut(s)	60, 458, 585
BseLI	CCNNNNNNNGG	2 cut(s)	117, 788
BseMII	CTCAG	4 cut(s)	229, 329, 624, 971
BseNI	ACTGG	2 cut(s)	688, 770
BseRI	GAGGAG	1 cut(s)	650
BseSI	GKGCMC	1 cut(s)	860
BshFI	GGCC	2 cut(s)	82, 352
BshNI	GGYRCC	3 cut(s)	129, 857, 898
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	5 cut(s)	179, 349, 479, 739, 861
BslFI	GGGAC	3 cut(s)	88, 318, 792
BslI	CCNNNNNNNGG	2 cut(s)	117, 788
BsmAI	GTCTC	3 cut(s)	246, 596, 970
BsmFI	GGGAC	3 cut(s)	88, 318, 792
BsnI	GGCC	2 cut(s)	82, 352
Bso31I	GGTCTC	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	2 cut(s)	691, 860
Bsp143I	GATC	2 cut(s)	33, 494
Bsp19I	CCATGG	3 cut(s)	100, 623, 782
BspANI	GGCC	2 cut(s)	82, 352
BspCNI	CTCAG	4 cut(s)	228, 330, 625, 970
BspLI	GGNNCC	5 cut(s)	131, 477, 780, 859, 900
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	3 cut(s)	129, 857, 898
BspTNI	GGTCTC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	688, 770
BssECI	CCNNGG	4 cut(s)	100, 575, 623, 782
BssMI	GATC	2 cut(s)	33, 494
BssNI	GRCGYC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	124
BssT1I	CCWWGG	3 cut(s)	100, 623, 782
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	576, 908
Bst4CI	ACNGT	2 cut(s)	523, 929
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	130
BstAPI	GCANNNNNTGC	2 cut(s)	374, 383
BstBI	TTCGAA	1 cut(s)	703
BstDEI	CTNAG	5 cut(s)	215, 338, 633, 922, 957
BstDSI	CCRYGG	3 cut(s)	100, 623, 782
BstEII	GGTNACC	1 cut(s)	929
BstF5I	GGATG	3 cut(s)	60, 458, 585
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	36, 497
BstMAI	GTCTC	3 cut(s)	246, 596, 970
BstMBI	GATC	2 cut(s)	33, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 326, 374, 383
BstNI	CCWGG	2 cut(s)	576, 908
BstPI	GGTNACC	1 cut(s)	929
BstSCI	CCNGG	4 cut(s)	478, 574, 737, 906
BstSFI	CTRYAG	1 cut(s)	1002
BstSLI	GKGCMC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	494
Bsu36I	CCTNAGG	1 cut(s)	957
BsuRI	GGCC	2 cut(s)	82, 352
BtgI	CCRYGG	3 cut(s)	100, 623, 782
BtsCI	GGATG	3 cut(s)	60, 458, 585
BtsIMutI	CAGTG	3 cut(s)	201, 528, 681
CaiI	CAGNNNCTG	1 cut(s)	765
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	80, 640, 779
Csp6I	GTAC	4 cut(s)	121, 391, 763, 899
CviAII	CATG	7 cut(s)	10, 101, 158, 167, 308, 624, 783
CviQI	GTAC	4 cut(s)	121, 391, 763, 899
DdeI	CTNAG	5 cut(s)	215, 338, 633, 922, 957
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	2 cut(s)	35, 496
DpnII	GATC	2 cut(s)	33, 494
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	3 cut(s)	100, 623, 782
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	640, 779
Eco81I	CCTNAGG	1 cut(s)	957
Eco91I	GGTNACC	1 cut(s)	929
EcoO109I	RGGNCCY	2 cut(s)	80, 640
EcoO65I	GGTNACC	1 cut(s)	929
EcoRII	CCWGG	2 cut(s)	574, 906
EcoT14I	CCWWGG	3 cut(s)	100, 623, 782
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
ErhI	CCWWGG	3 cut(s)	100, 623, 782
FaeI	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 786
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	3 cut(s)	88, 318, 792
FatI	CATG	7 cut(s)	9, 100, 157, 166, 307, 623, 782
FokI	GGATG	3 cut(s)	67, 465, 592
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	82, 352
HapII	CCGG	5 cut(s)	179, 349, 479, 739, 861
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 786
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	284
HindII	GTYRAC	1 cut(s)	284
HinfI	GANTC	7 cut(s)	206, 340, 360, 425, 671, 713, 892
HpaII	CCGG	5 cut(s)	179, 349, 479, 739, 861
HphI	GGTGA	8 cut(s)	16, 17, 201, 209, 233, 458, 839, 923
Hpy166II	GTNNAC	2 cut(s)	7, 284
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	6 cut(s)	269, 415, 473, 599, 889, 959
Hpy8I	GTNNAC	2 cut(s)	7, 284
HpyAV	CCTTC	3 cut(s)	443, 477, 994
HpyCH4III	ACNGT	2 cut(s)	523, 929
HpyCH4V	TGCA	3 cut(s)	58, 176, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 326, 374, 383
HpyF3I	CTNAG	5 cut(s)	215, 338, 633, 922, 957
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 786
HspAI	GCGC	1 cut(s)	130
KasI	GGCGCC	1 cut(s)	129
KpnI	GGTACC	1 cut(s)	902
Kzo9I	GATC	2 cut(s)	33, 494
LmnI	GCTCC	5 cut(s)	317, 391, 574, 583, 769
LweI	GCATC	3 cut(s)	45, 343, 838
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	5 cut(s)	23, 143, 197, 827, 929
MalI	GATC	2 cut(s)	35, 496
MboI	GATC	2 cut(s)	33, 494
MboII	GAAGA	5 cut(s)	86, 227, 230, 396, 541
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	691, 860
MluCI	AATT	5 cut(s)	138, 614, 694, 975, 995
Mly113I	GGCGCC	1 cut(s)	130
MlyI	GAGTC	5 cut(s)	200, 349, 369, 722, 901
MmeI	TCCRAC	2 cut(s)	229, 727
MroXI	GAANNNNTTC	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	5 cut(s)	179, 349, 479, 739, 861
MspR9I	CCNGG	4 cut(s)	480, 576, 739, 908
MvaI	CCWGG	2 cut(s)	576, 908
MwoI	GCNNNNNNNGC	4 cut(s)	88, 326, 374, 383
NarI	GGCGCC	1 cut(s)	130
NciI	CCSGG	2 cut(s)	480, 739
NcoI	CCATGG	3 cut(s)	100, 623, 782
NdeII	GATC	2 cut(s)	33, 494
NlaIII	CATG	7 cut(s)	13, 104, 161, 170, 311, 627, 786
NlaIV	GGNNCC	5 cut(s)	131, 477, 780, 859, 900
NmuCI	GTSAC	4 cut(s)	23, 197, 827, 929
NspV	TTCGAA	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	425, 671
PleI	GAGTC	5 cut(s)	200, 348, 368, 721, 900
PluTI	GGCGCC	1 cut(s)	133
PpsI	GAGTC	5 cut(s)	200, 348, 368, 721, 900
PpuMI	RGGWCCY	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	574, 906
PspEI	GGTNACC	1 cut(s)	929
PspGI	CCWGG	2 cut(s)	574, 906
PspN4I	GGNNCC	5 cut(s)	131, 477, 780, 859, 900
PspPI	GGNCC	3 cut(s)	80, 640, 779
PspPPI	RGGWCCY	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	4 cut(s)	122, 392, 764, 900
RsaNI	GTAC	4 cut(s)	121, 391, 763, 899
RseI	CAYNNNNRTG	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	33, 494
Sau96I	GGNCC	3 cut(s)	80, 640, 779
SchI	GAGTC	5 cut(s)	200, 349, 369, 722, 901
ScrFI	CCNGG	4 cut(s)	480, 576, 739, 908
SduI	GDGCHC	2 cut(s)	691, 860
SfaNI	GCATC	3 cut(s)	45, 343, 838
SfcI	CTRYAG	1 cut(s)	1002
SfoI	GGCGCC	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	703
SinI	GGWCC	2 cut(s)	640, 779
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	5 cut(s)	138, 614, 694, 975, 995
SspDI	GGCGCC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	4 cut(s)	478, 574, 737, 906
StyI	CCWWGG	3 cut(s)	100, 623, 782
TaaI	ACNGT	2 cut(s)	523, 929
TaqI	TCGA	1 cut(s)	703
TasI	AATT	5 cut(s)	138, 614, 694, 975, 995
TfiI	GAWTC	2 cut(s)	425, 671
TscAI	CASTG	3 cut(s)	208, 528, 688
TseFI	GTSAC	4 cut(s)	23, 197, 827, 929
Tsp45I	GTSAC	4 cut(s)	23, 197, 827, 929
TspDTI	ATGAA	4 cut(s)	542, 768, 808, 976
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	3 cut(s)	208, 528, 688
VpaK11BI	GGWCC	2 cut(s)	640, 779
XapI	RAATTY	2 cut(s)	975, 995
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.