Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Forward (+)

7747970 .. 7749132

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACAGTGATGAAGAAGTTCCTGCTGACAACTAATAATTTGATAGCTCCTCCGGACATGGAGCTTATCGATTACCTGGAGACACAATCGTCATTGCCGGCATGGCTAACCGAAGAGGATATCCGGGTCTTTGCCAAAAAATTTGAGGAGTCTGGATTCACCGGTCCTTTGAACTACTATCGCGCAATGGATCTGACTTGGGAGCTTCTTGCGCCCTGGCAAGGATCGAAAATCATGGTACCCGTGATGTTCATGATCGGCAATAAAGATCCCGGGTTTAAATCAGGCGAAACAAGTGAATTTGTGCAAGGTGATGAGTTCAGGAGCCTTGTCCCGGACCTTGAGGTGGTTATCGTAGGTGGCCACCATTTCATCCAACAAGAGAACCCTCAAGAAGTCTCCAGCCAAATGCTTTCCTTCCTCCGTCAACATCCTGCAGATCATTACAATAAAAACTCAACTAGTTTGTTTGAGGAAGGATATAGGCCTTGTTCCGTAACAGAAATCCAGAAATTCAACACATTACAATACAATCCAATACAATTTACTATAGAGGTACAATCCGTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

191

Amino Acids

21.84

Weight (kDa)

4.74

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	52
AclWI	GGATC	3 cut(s)	198, 232, 263
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	3 cut(s)	140, 299, 512
AfaI	GTAC	2 cut(s)	240, 558
AfiI	CCNNNNNNNGG	3 cut(s)	221, 334, 346
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	172, 517
AhlI	ACTAGT	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	75, 215
AluBI	AGCT	3 cut(s)	47, 64, 205
AluI	AGCT	3 cut(s)	47, 64, 205
Alw26I	GTCTC	2 cut(s)	74, 403
AlwI	GGATC	3 cut(s)	198, 232, 263
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	2 cut(s)	361, 485
ApoI	RAATTY	3 cut(s)	140, 299, 512
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	185, 214
AspS9I	GGNCC	2 cut(s)	164, 337
AsuC2I	CCSGG	4 cut(s)	125, 273, 274, 335
AsuHPI	GGTGA	2 cut(s)	151, 323
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	164, 337
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	77, 217
BcnI	CCSGG	4 cut(s)	125, 273, 274, 335
BcoDI	GTCTC	2 cut(s)	74, 403
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	435, 549
BglI	GCCNNNNNGGC	1 cut(s)	103
Bme1390I	CCNGG	6 cut(s)	77, 125, 217, 273, 274, 335
Bme18I	GGWCC	2 cut(s)	164, 337
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	164, 337
BmiI	GGNNCC	2 cut(s)	240, 326
BmrFI	CCNGG	6 cut(s)	77, 125, 217, 273, 274, 335
BpmI	CTGGAG	2 cut(s)	98, 385
BpuEI	CTTGAG	2 cut(s)	362, 375
BpuMI	CCSGG	4 cut(s)	125, 273, 274, 335
Bsa29I	ATCGAT	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	215, 272
BsaWI	WCCGGW	2 cut(s)	52, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 334, 346
Bse118I	RCCGGY	2 cut(s)	97, 161
Bse3DI	GCAATG	2 cut(s)	92, 192
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	77, 217
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	215, 272
BseGI	GGATG	2 cut(s)	372, 430
BseLI	CCNNNNNNNGG	3 cut(s)	221, 334, 346
BseMI	GCAATG	2 cut(s)	92, 192
BseRI	GAGGAG	2 cut(s)	39, 161
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	363, 487
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	6 cut(s)	53, 98, 124, 162, 273, 335
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	221, 334, 346
BsmAI	GTCTC	2 cut(s)	74, 403
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	363, 487
BsoBI	CYCGRG	1 cut(s)	272
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	5 cut(s)	190, 224, 255, 268, 439
BspANI	GGCC	2 cut(s)	363, 487
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	240, 326
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	3 cut(s)	198, 232, 263
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	92, 192
BsrFI	RCCGGY	2 cut(s)	97, 161
BssAI	RCCGGY	2 cut(s)	97, 161
BssECI	CCNNGG	2 cut(s)	215, 272
BssMI	GATC	5 cut(s)	190, 224, 255, 268, 439
Bst2UI	CCWGG	2 cut(s)	77, 217
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	372, 430
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	185, 214
BstKTI	GATC	5 cut(s)	193, 227, 258, 271, 442
BstMAI	GTCTC	2 cut(s)	74, 403
BstMBI	GATC	5 cut(s)	190, 224, 255, 268, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 211
BstNI	CCWGG	2 cut(s)	77, 217
BstSCI	CCNGG	6 cut(s)	75, 123, 215, 271, 272, 333
BstSFI	CTRYAG	2 cut(s)	435, 549
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	190, 268
BstYI	RGATCY	2 cut(s)	190, 268
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	363, 487
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	372, 430
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	2 cut(s)	185, 214
Cfr10I	RCCGGY	2 cut(s)	97, 161
Cfr13I	GGNCC	2 cut(s)	164, 337
Cfr9I	CCCGGG	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	239, 557
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	4 cut(s)	58, 102, 235, 253
CviJI	RGCY	8 cut(s)	47, 64, 106, 205, 327, 363, 405, 487
CviKI_1	RGCY	8 cut(s)	47, 64, 106, 205, 327, 363, 405, 487
CviQI	GTAC	2 cut(s)	239, 557
DpnI	GATC	5 cut(s)	192, 226, 257, 270, 441
DpnII	GATC	5 cut(s)	190, 224, 255, 268, 439
DraI	TTTAAA	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	164, 337
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	75, 215
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	4 cut(s)	61, 105, 238, 256
FaiI	YATR	7 cut(s)	59, 103, 236, 254, 483, 551, 571
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	57, 101, 234, 252
FokI	GGATG	2 cut(s)	359, 417
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	2 cut(s)	184, 213
GsuI	CTGGAG	2 cut(s)	98, 385
HaeIII	GGCC	2 cut(s)	363, 487
HapII	CCGG	6 cut(s)	53, 98, 124, 162, 273, 335
HhaI	GCGC	2 cut(s)	185, 214
Hin1II	CATG	4 cut(s)	61, 105, 238, 256
Hin6I	GCGC	2 cut(s)	183, 212
HinP1I	GCGC	2 cut(s)	183, 212
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	2 cut(s)	149, 156
HpaII	CCGG	6 cut(s)	53, 98, 124, 162, 273, 335
HphI	GGTGA	2 cut(s)	151, 323
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	6 cut(s)	53, 153, 253, 322, 392, 508
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	2 cut(s)	427, 470
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	307, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 211
Hsp92II	CATG	4 cut(s)	61, 105, 238, 256
HspAI	GCGC	2 cut(s)	183, 212
Kpn2I	TCCGGA	1 cut(s)	52
KpnI	GGTACC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	190, 224, 255, 268, 439
LmnI	GCTCC	4 cut(s)	52, 61, 202, 324
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	192, 226, 257, 270, 441
MboI	GATC	5 cut(s)	190, 224, 255, 268, 439
MboII	GAAGA	2 cut(s)	25, 125
MflI	RGATCY	2 cut(s)	190, 268
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	5 cut(s)	37, 140, 299, 512, 542
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	60, 109, 139, 337, 399, 431, 466, 547
Mox20I	TGGCCA	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	363
MspI	CCGG	6 cut(s)	53, 98, 124, 162, 273, 335
MspR9I	CCNGG	6 cut(s)	77, 125, 217, 273, 274, 335
MvaI	CCWGG	2 cut(s)	77, 217
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	103, 211
NaeI	GCCGGC	1 cut(s)	99
NciI	CCSGG	4 cut(s)	125, 273, 274, 335
NdeII	GATC	5 cut(s)	190, 224, 255, 268, 439
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	61, 105, 238, 256
NlaIV	GGNNCC	2 cut(s)	240, 326
PagI	TCATGA	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	487
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	161
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	75, 215
PspGI	CCWGG	2 cut(s)	75, 215
PspN4I	GGNNCC	2 cut(s)	240, 326
PspPI	GGNCC	2 cut(s)	164, 337
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	190, 268
RsaI	GTAC	2 cut(s)	240, 558
RsaNI	GTAC	2 cut(s)	239, 557
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	5 cut(s)	190, 224, 255, 268, 439
Sau96I	GGNCC	2 cut(s)	164, 337
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	6 cut(s)	77, 125, 217, 273, 274, 335
SetI	ASST	9 cut(s)	49, 66, 78, 207, 313, 342, 348, 361, 558
SfcI	CTRYAG	2 cut(s)	435, 549
SinI	GGWCC	2 cut(s)	164, 337
SmaI	CCCGGG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	341, 390
SmoI	CTYRAG	2 cut(s)	341, 390
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	5 cut(s)	37, 140, 299, 512, 542
SseBI	AGGCCT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	6 cut(s)	75, 123, 215, 271, 272, 333
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	2 cut(s)	69, 227
TasI	AATT	5 cut(s)	37, 140, 299, 512, 542
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	3 cut(s)	26, 241, 361
TspGWI	ACGGA	3 cut(s)	413, 484, 553
TspMI	CCCGGG	1 cut(s)	272
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	164, 337
XapI	RAATTY	3 cut(s)	140, 299, 512
XmaI	CCCGGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.