Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Forward (+)

11590586 .. 11592770

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1138600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAATGATGAGGTGACTCACCAGAGGATCAAAACTAATGGAATATGGATGCACATAGCGGAGCAAGGGACAGGGCCTCTGGTGCTTCTCCTCCACGGCTTCCCGGAAATATGGTATTCGTGGCGCCACCAGATCAGTTTCTTGGCTAAGCATGGCTACCATGTTGTTGCTCCTGACATGAGAGGCTATGGCGACACCGACGCCCCTCTCAACCCTTCCTCCTACTCCATTCTCCACCTCGTCGGCGACCTTGTTGGCCTCCTTGATCATTTTGGTGGACAGCAGGCATTTGTTGTGGGACATGACTATGGAGCCATTGCAGCTTGGCACCTGAGCCTTCTCAAGCCCGAGAGAGTCAAGGCCGTCGTTGCACTATCTGCTCCATACTTCGAAAGGTCTTCAAGCACTAGGAATTCCGATTCGATGAGGCAGCTGTTCGGCGAGGGGTGTTACGTTCATCAGTTTCAGGAGCCAGGAAGAGCAGAAAAATCGTTTGCGAGATACGATTATTTGACGGTGATGAAGAAGTTCCTGCTGTATAACAAGACAGATTATCTGGTGGCTCCTCGTGGAATGGAGATAATCGATTATCTGGAGACACCGGCGGTGTTGCCGCCATGGATTTCTGAAGAGGACCTCCAAGTCTATGCTCAAAAGTTTGAGGAATCTGGCTTCACTGGTGCTCTCAATTATTTTCGTACAATTGAAATGTACTGGGAGCTCATGGGACCATGGCAAGGTTCAAAGGTTAATGTTCCAGCAAAGTTCATTGTGGGTGACAAAGACATTGGTATTGAAGTTCTGGGCACAATGGAATATGTAAAAGGAAGTGTTTTCAAGAGTCTTGTGCCGAACCTGGAAGTCGTGATCTTGGACGGCCACCATTGTATCCAGCAAGAGAAAGCTCCAGAAGTCTCCGACGAGATTCTTTCCTTCCTACGCAAGTTTTCTACAGAAAAGAGTTTGCCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

325

Amino Acids

36.73

Weight (kDa)

5.71

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 130	2e-28	alpha/beta hydrolase fold
Hydrolase_4	PF12146	27 - 134	2.3e-12	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	28 - 305	4.5e-18	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	641
AccB1I	GGYRCC	2 cut(s)	123, 327
AciI	CCGC	3 cut(s)	59, 605, 614
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	648
AcyI	GRCGYC	2 cut(s)	124, 201
AfaI	GTAC	2 cut(s)	700, 713
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	5 cut(s)	402, 707, 744, 797, 838
AjnI	CCWGG	2 cut(s)	472, 855
AluBI	AGCT	4 cut(s)	323, 433, 721, 905
AluI	AGCT	4 cut(s)	323, 433, 721, 905
Alw21I	GWGCWC	2 cut(s)	685, 723
Alw26I	GTCTC	2 cut(s)	590, 919
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	4 cut(s)	74, 256, 360, 877
ApeKI	GCWGC	2 cut(s)	320, 430
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	3 cut(s)	74, 634, 728
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	4 cut(s)	11, 25, 529, 788
AsuII	TTCGAA	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	634, 728
BaeGI	GKGCMC	1 cut(s)	809
BaeI	ACNNNNGTAYC	2 cut(s)	871, 904
BanI	GGYRCC	2 cut(s)	123, 327
BanII	GRGCYC	1 cut(s)	723
BauI	CACGAG	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	685, 723
BbvI	GCAGC	2 cut(s)	332, 442
BceAI	ACGGC	3 cut(s)	112, 347, 892
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BciT130I	CCWGG	2 cut(s)	474, 857
BciVI	GTATCC	1 cut(s)	899
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	590, 919
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	951
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	899
BisI	GCNGC	3 cut(s)	321, 431, 614
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	3 cut(s)	322, 432, 615
Bme1390I	CCNGG	3 cut(s)	104, 474, 857
Bme18I	GGWCC	2 cut(s)	634, 728
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	74, 634, 728
BmiI	GGNNCC	6 cut(s)	125, 313, 329, 471, 564, 729
BmrFI	CCNGG	3 cut(s)	104, 474, 857
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	2 cut(s)	614, 891
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	585
BsaHI	GRCGYC	2 cut(s)	124, 201
BsaJI	CCNNGG	3 cut(s)	94, 617, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	3 cut(s)	682, 719, 968
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	474, 857
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	94, 617, 731
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	3 cut(s)	682, 719, 968
BseRI	GAGGAG	2 cut(s)	80, 555
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	2 cut(s)	332, 442
BshFI	GGCC	4 cut(s)	76, 258, 362, 879
BshNI	GGYRCC	2 cut(s)	123, 327
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	2 cut(s)	685, 723
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	104, 602
BslFI	GGGAC	3 cut(s)	82, 312, 741
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	590, 919
BsmFI	GGGAC	3 cut(s)	82, 312, 741
BsnI	GGCC	4 cut(s)	76, 258, 362, 879
BsoBI	CYCGRG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	685, 723, 809
Bsp143I	GATC	4 cut(s)	27, 132, 265, 867
Bsp1720I	GCTNAGC	1 cut(s)	147
Bsp19I	CCATGG	2 cut(s)	617, 731
BspACI	CCGC	3 cut(s)	59, 605, 614
BspANI	GGCC	4 cut(s)	76, 258, 362, 879
BspCNI	CTCAG	1 cut(s)	324
BspDI	ATCGAT	1 cut(s)	585
BspLI	GGNNCC	6 cut(s)	125, 313, 329, 471, 564, 729
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	472
BspT104I	TTCGAA	1 cut(s)	390
BspT107I	GGYRCC	2 cut(s)	123, 327
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	3 cut(s)	682, 719, 968
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	94, 617, 731
BssMI	GATC	4 cut(s)	27, 132, 265, 867
BssNI	GRCGYC	2 cut(s)	124, 201
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	2 cut(s)	617, 731
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	474, 857
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	2 cut(s)	472, 624
BstACI	GRCGYC	2 cut(s)	124, 201
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	147, 332
BstDSI	CCRYGG	3 cut(s)	94, 617, 731
BstF5I	GGATG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	4 cut(s)	30, 135, 268, 870
BstMAI	GTCTC	2 cut(s)	590, 919
BstMBI	GATC	4 cut(s)	27, 132, 265, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 320, 368, 377
BstNI	CCWGG	2 cut(s)	474, 857
BstSCI	CCNGG	3 cut(s)	102, 472, 855
BstSFI	CTRYAG	1 cut(s)	951
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	332, 442
BstV2I	GAAGAC	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	899
BsuRI	GGCC	4 cut(s)	76, 258, 362, 879
BsuTUI	ATCGAT	1 cut(s)	585
BtgI	CCRYGG	3 cut(s)	94, 617, 731
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	3 cut(s)	74, 634, 728
ClaI	ATCGAT	1 cut(s)	585
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	699, 712
CviAII	CATG	7 cut(s)	152, 161, 178, 302, 618, 724, 732
CviQI	GTAC	2 cut(s)	699, 712
DdeI	CTNAG	2 cut(s)	147, 332
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	4 cut(s)	29, 134, 267, 869
DpnII	GATC	4 cut(s)	27, 132, 265, 867
DrdI	GACNNNNNNGTC	1 cut(s)	641
DseDI	GACNNNNNNGTC	1 cut(s)	641
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	2 cut(s)	472, 624
EarI	CTCTTC	2 cut(s)	472, 624
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	2 cut(s)	617, 731
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	634, 728
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	721
EcoO109I	RGGNCCY	2 cut(s)	74, 634
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	472, 855
EcoT14I	CCWWGG	2 cut(s)	617, 731
EcoT38I	GRGCYC	1 cut(s)	723
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	617, 731
FaeI	CATG	7 cut(s)	155, 164, 181, 305, 621, 727, 735
FaqI	GGGAC	3 cut(s)	82, 312, 741
FatI	CATG	7 cut(s)	151, 160, 177, 301, 617, 723, 731
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	321, 431, 614
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	3 cut(s)	321, 431, 614
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	3 cut(s)	321, 431, 614
GsuI	CTGGAG	2 cut(s)	614, 891
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	4 cut(s)	76, 258, 362, 879
HapII	CCGG	2 cut(s)	104, 602
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	2 cut(s)	124, 201
Hin1II	CATG	7 cut(s)	155, 164, 181, 305, 621, 727, 735
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	6 cut(s)	16, 354, 419, 665, 841, 925
HpaII	CCGG	2 cut(s)	104, 602
HphI	GGTGA	4 cut(s)	11, 25, 529, 788
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	418, 628, 919
Hpy188III	TCNNGA	6 cut(s)	173, 467, 593, 838, 865, 908
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	4 cut(s)	203, 245, 368, 923
HpyAV	CCTTC	3 cut(s)	225, 347, 943
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	52, 320, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 320, 368, 377
HpyF3I	CTNAG	2 cut(s)	147, 332
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	2 cut(s)	124, 201
Hsp92II	CATG	7 cut(s)	155, 164, 181, 305, 621, 727, 735
HspAI	GCGC	1 cut(s)	124
KasI	GGCGCC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	27, 132, 265, 867
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	8 cut(s)	61, 175, 311, 385, 469, 568, 718, 910
Lsp1109I	GCAGC	2 cut(s)	332, 442
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	13, 449, 776
MalI	GATC	4 cut(s)	29, 134, 267, 869
MboI	GATC	4 cut(s)	27, 132, 265, 867
MboII	GAAGA	4 cut(s)	390, 489, 535, 641
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	3 cut(s)	685, 723, 809
MluCI	AATT	3 cut(s)	412, 688, 702
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	3 cut(s)	10, 363, 850
MmeI	TCCRAC	1 cut(s)	942
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	2 cut(s)	273, 306
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	104, 602
MspR9I	CCNGG	3 cut(s)	104, 474, 857
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	474, 857
MwoI	GCNNNNNNNGC	4 cut(s)	82, 320, 368, 377
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	2 cut(s)	617, 731
NdeII	GATC	4 cut(s)	27, 132, 265, 867
NlaIII	CATG	7 cut(s)	155, 164, 181, 305, 621, 727, 735
NlaIV	GGNNCC	6 cut(s)	125, 313, 329, 471, 564, 729
NmuCI	GTSAC	2 cut(s)	13, 776
NspV	TTCGAA	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	419, 665, 925
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	322, 432, 615
PleI	GAGTC	3 cut(s)	10, 362, 849
PluTI	GGCGCC	1 cut(s)	127
PpsI	GAGTC	3 cut(s)	10, 362, 849
PpuMI	RGGWCCY	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	472, 855
PspGI	CCWGG	2 cut(s)	472, 855
PspN4I	GGNNCC	6 cut(s)	125, 313, 329, 471, 564, 729
PspPI	GGNCC	3 cut(s)	74, 634, 728
PspPPI	RGGWCCY	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	700, 713
RsaNI	GTAC	2 cut(s)	699, 712
RseI	CAYNNNNRTG	2 cut(s)	273, 306
SacI	GAGCTC	1 cut(s)	723
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	3 cut(s)	321, 431, 614
Sau3AI	GATC	4 cut(s)	27, 132, 265, 867
Sau96I	GGNCC	3 cut(s)	74, 634, 728
SchI	GAGTC	3 cut(s)	10, 363, 850
ScrFI	CCNGG	3 cut(s)	104, 474, 857
SduI	GDGCHC	3 cut(s)	685, 723, 809
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	951
SfoI	GGCGCC	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	390
SgrAI	CRCCGGYG	1 cut(s)	601
SinI	GGWCC	2 cut(s)	634, 728
SmiMI	CAYNNNNRTG	2 cut(s)	273, 306
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	412, 688, 702
SsiI	CCGC	3 cut(s)	59, 605, 614
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	3 cut(s)	102, 472, 855
StyI	CCWWGG	2 cut(s)	617, 731
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	390, 422, 585
TasI	AATT	3 cut(s)	412, 688, 702
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	419, 665, 925
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	2 cut(s)	13, 776
TseI	GCWGC	2 cut(s)	320, 430
Tsp45I	GTSAC	2 cut(s)	13, 776
TspDTI	ATGAA	4 cut(s)	17, 446, 536, 757
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	634, 728
XapI	RAATTY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.