Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Reverse (-)

6852343 .. 6857356

Gene Structure 5014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGTCGGCGTCGCCGCCGCAGTGGCAGTGGGAGAACGCCACCGCCGGCGCCGTCGCCGGCTTCGCAACCGTCGCCGCGATGCATCCTCTCGATGTCGTCCGCACCAGGTTCCAAGTCAACGACGGCCGAGTCTCCAATCTTCCGACTTACAAGAACACGGCGAACGCTATCTTCACCATTGCTCGATCGGAGGGACTGAGAGGACTCTACGCTGGCTTCTCTCCGGCTGTGATTGGCTCCACTGTTTCGTGGGGTTTATACTTCTTCTTCTATGGAAGAGCCAAACAGAGGTATTCTAAGAATGGGGATGAGAAGTTGAGTCCTGGTCTTCATCTTGCTTCTGCAGCTGAAGCTGGTGCTCTGGTTTCTTTGTGCACAAATCCTATTTGGCTTGTAAAAACAAGAATGCAGCTTCAGACTCCTCTCCATCAAACACGACCATATTCTGGTTTTTATGATGCCTTGAGAACCATAATCAGAGAGGAAGGATTTGCTGCACTGTATAAAGGTCTTGGTCCTAGCCTTTTTCTGGTCTCCCACGGTGCTATACAATTCACTGCATATGAAGAACTCCGTAAAATTATTGTTGATTTGAAGTCTAAAAAAAGCACAAGTAATTCTGGAAGTTCGGATACCGTGTTGAATTCATTTGACTATGCAGCCTTAGGGGCATCATCAAAAGTCGCTGCCATTCTTCTATCATATCCATTCCAGGTTATACGATCTCGATTGCAGGTATATCCATATATTATTGTAATTCTTTTTATCATTTTATATGGTCTCAGTTGGTTGTTCCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

269

Amino Acids

29.45

Weight (kDa)

9.68

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	11 - 101	8.9e-22	Mitochondrial carrier protein
Mito_carr	PF00153	106 - 197	9.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	727
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	17, 20, 45, 78, 103
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	372, 401
AcyI	GRCGYC	2 cut(s)	11, 51
AfiI	CCNNNNNNNGG	3 cut(s)	291, 449, 532
AgsI	TTSAA	2 cut(s)	598, 646
AjnI	CCWGG	3 cut(s)	107, 325, 714
AluBI	AGCT	3 cut(s)	350, 356, 415
AluI	AGCT	3 cut(s)	350, 356, 415
Alw21I	GWGCWC	2 cut(s)	364, 380
Alw26I	GTCTC	3 cut(s)	139, 541, 788
Alw44I	GTGCAC	1 cut(s)	376
AoxI	GGCC	1 cut(s)	127
ApaLI	GTGCAC	1 cut(s)	376
ApeKI	GCWGC	5 cut(s)	347, 412, 497, 662, 689
ApoI	RAATTY	1 cut(s)	646
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	518
AxyI	CCTNAGG	1 cut(s)	667
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	2 cut(s)	364, 380
BbvI	GCAGC	5 cut(s)	359, 424, 484, 674, 676
BccI	CCATC	1 cut(s)	438
BceAI	ACGGC	3 cut(s)	38, 142, 177
BciT130I	CCWGG	3 cut(s)	109, 327, 716
BciVI	GTATCC	1 cut(s)	628
BcoDI	GTCTC	3 cut(s)	139, 541, 788
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	727
BfuI	GTATCC	1 cut(s)	628
BglI	GCCNNNNNGGC	2 cut(s)	25, 671
BisI	GCNGC	8 cut(s)	17, 20, 78, 348, 413, 498, 663, 690
BlsI	GCNGC	8 cut(s)	18, 21, 79, 349, 414, 499, 664, 691
Bme1390I	CCNGG	3 cut(s)	109, 327, 716
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	3 cut(s)	52, 113, 241
BmrFI	CCNGG	3 cut(s)	109, 327, 716
BmsI	GCATC	4 cut(s)	72, 94, 451, 683
BpiI	GAAGAC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	487
BsaHI	GRCGYC	2 cut(s)	11, 51
BsaI	GGTCTC	2 cut(s)	541, 788
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 449, 532
Bse118I	RCCGGY	2 cut(s)	47, 59
Bse21I	CCTNAGG	1 cut(s)	667
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	109, 327, 716
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	85, 316
BseLI	CCNNNNNNNGG	3 cut(s)	291, 449, 532
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	191, 799
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	380
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	5 cut(s)	359, 424, 484, 674, 676
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	2 cut(s)	130, 191
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	2 cut(s)	130, 191
BsiHKAI	GWGCWC	2 cut(s)	364, 380
BsiSI	CCGG	3 cut(s)	48, 60, 227
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	291, 449, 532
BsmAI	GTCTC	3 cut(s)	139, 541, 788
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	2 cut(s)	541, 788
Bsp1286I	GDGCHC	2 cut(s)	364, 380
Bsp143I	GATC	2 cut(s)	188, 725
BspACI	CCGC	5 cut(s)	17, 20, 45, 78, 103
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	192, 798
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	52, 113, 241
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	727
BspQI	GCTCTTC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	2 cut(s)	541, 788
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	2 cut(s)	47, 59
BssAI	RCCGGY	2 cut(s)	47, 59
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	2 cut(s)	188, 725
BssNI	GRCGYC	2 cut(s)	11, 51
Bst2UI	CCWGG	3 cut(s)	109, 327, 716
Bst4CI	ACNGT	5 cut(s)	73, 247, 504, 545, 640
Bst6I	CTCTTC	1 cut(s)	274
BstACI	GRCGYC	2 cut(s)	11, 51
BstC8I	GCNNGC	3 cut(s)	49, 61, 217
BstDEI	CTNAG	4 cut(s)	200, 300, 667, 785
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	85, 316
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	191, 728
BstMAI	GTCTC	3 cut(s)	139, 541, 788
BstMBI	GATC	2 cut(s)	188, 725
BstMCI	CGRYCG	2 cut(s)	130, 191
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 65, 74, 347, 353, 671
BstNI	CCWGG	3 cut(s)	109, 327, 716
BstSCI	CCNGG	3 cut(s)	107, 325, 714
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	359, 424, 484, 674, 676
BstV2I	GAAGAC	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	85, 316
BtsI	GCAGTG	3 cut(s)	29, 35, 558
BtsIMutI	CAGTG	5 cut(s)	29, 35, 243, 500, 558
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	3 cut(s)	49, 61, 217
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	2 cut(s)	47, 59
Cfr13I	GGNCC	1 cut(s)	518
CsiI	ACCWGGT	1 cut(s)	107
DdeI	CTNAG	4 cut(s)	200, 300, 667, 785
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	2 cut(s)	190, 727
DpnII	GATC	2 cut(s)	188, 725
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	127
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
EclXI	CGGCCG	1 cut(s)	127
Eco31I	GGTCTC	2 cut(s)	541, 788
Eco47I	GGWCC	1 cut(s)	518
Eco52I	CGGCCG	1 cut(s)	127
Eco57I	CTGAAG	2 cut(s)	372, 401
Eco81I	CCTNAGG	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	107, 325, 714
EcoT22I	ATGCAT	1 cut(s)	87
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaqI	GGGAC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	8 cut(s)	17, 20, 78, 348, 413, 498, 663, 690
FokI	GGATG	2 cut(s)	72, 323
Fsp4HI	GCNGC	8 cut(s)	17, 20, 78, 348, 413, 498, 663, 690
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	8 cut(s)	17, 20, 78, 348, 413, 498, 663, 690
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	3 cut(s)	48, 60, 227
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	2 cut(s)	11, 51
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	132, 207, 322, 421
HpaII	CCGG	3 cut(s)	48, 60, 227
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	121, 378
Hpy188I	TCNGA	5 cut(s)	147, 193, 420, 482, 634
Hpy188III	TCNNGA	3 cut(s)	92, 624, 729
Hpy8I	GTNNAC	2 cut(s)	121, 378
Hpy99I	CGWCG	5 cut(s)	10, 16, 59, 77, 128
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	5 cut(s)	73, 247, 504, 545, 640
HpyCH4V	TGCA	8 cut(s)	85, 347, 378, 412, 500, 563, 662, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 65, 74, 347, 353, 671
HpyF3I	CTNAG	4 cut(s)	200, 300, 667, 785
Hsp92I	GRCGYC	2 cut(s)	11, 51
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
KroI	GCCGGC	2 cut(s)	47, 59
KroNI	GCCGGC	2 cut(s)	49, 61
Kzo9I	GATC	2 cut(s)	188, 725
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	5 cut(s)	359, 424, 484, 674, 676
LweI	GCATC	4 cut(s)	72, 94, 451, 683
MabI	ACCWGGT	1 cut(s)	107
MaeI	CTAG	1 cut(s)	522
MalI	GATC	2 cut(s)	190, 727
MboI	GATC	2 cut(s)	188, 725
MboII	GAAGA	8 cut(s)	134, 166, 259, 262, 291, 323, 581, 689
MhlI	GDGCHC	2 cut(s)	364, 380
MluCI	AATT	5 cut(s)	554, 582, 619, 646, 759
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	4 cut(s)	141, 201, 331, 415
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	6 cut(s)	99, 187, 197, 285, 435, 478
Mph1103I	ATGCAT	1 cut(s)	87
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	47, 59
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	3 cut(s)	48, 60, 227
MspR9I	CCNGG	3 cut(s)	109, 327, 716
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	3 cut(s)	109, 327, 716
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	6 cut(s)	25, 65, 74, 347, 353, 671
NaeI	GCCGGC	2 cut(s)	49, 61
NarI	GGCGCC	1 cut(s)	51
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	2 cut(s)	188, 725
NgoMIV	GCCGGC	2 cut(s)	47, 59
NlaIV	GGNNCC	3 cut(s)	52, 113, 241
NmeAIII	GCCGAG	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	274
PctI	GAATGC	1 cut(s)	414
PdiI	GCCGGC	2 cut(s)	49, 61
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	8 cut(s)	18, 21, 79, 349, 414, 499, 664, 691
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	4 cut(s)	140, 201, 330, 415
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	4 cut(s)	140, 201, 330, 415
Psp6I	CCWGG	3 cut(s)	107, 325, 714
PspGI	CCWGG	3 cut(s)	107, 325, 714
PspN4I	GGNNCC	3 cut(s)	52, 113, 241
PspPI	GGNCC	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	349
PvuI	CGATCG	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	274
SatI	GCNGC	8 cut(s)	17, 20, 78, 348, 413, 498, 663, 690
Sau3AI	GATC	2 cut(s)	188, 725
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	4 cut(s)	141, 201, 331, 415
ScrFI	CCNGG	3 cut(s)	109, 327, 716
SduI	GDGCHC	2 cut(s)	364, 380
SetI	ASST	8 cut(s)	113, 296, 352, 358, 417, 514, 720, 741
SexAI	ACCWGGT	1 cut(s)	107
SfaNI	GCATC	4 cut(s)	72, 94, 451, 683
SfcI	CTRYAG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	52
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	5 cut(s)	554, 582, 619, 646, 759
SsiI	CCGC	5 cut(s)	17, 20, 45, 78, 103
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	107, 325, 714
TaaI	ACNGT	5 cut(s)	73, 247, 504, 545, 640
TaqI	TCGA	3 cut(s)	93, 187, 730
TasI	AATT	5 cut(s)	554, 582, 619, 646, 759
TauI	GCSGC	3 cut(s)	19, 22, 80
TscAI	CASTG	5 cut(s)	29, 35, 250, 507, 565
TseI	GCWGC	5 cut(s)	347, 412, 497, 662, 689
TspDTI	ATGAA	3 cut(s)	323, 582, 639
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	5 cut(s)	29, 35, 250, 507, 565
Van91I	CCANNNNNTGG	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	646
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.