Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Reverse (-)

12551955 .. 12556163

Gene Structure 4209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGTCGTCGTCGGCGTCTCCGCAGTGGCAGTGGGAAAACGCCACCGCCGGCGCCGTCGCCGGCTTCGCAACCGTTGCAGCTATGCATCCCCTCGACGTCGTCCGCACCAGGTTTCAAGTCAACGACGGCCGAATCTCCAATCTTCCGACTTACAAGAACACGGCGAACGCTATCTTCACCATTGCTCGATTGGAGGGACTGAGAGGACTCTATGCAGGCTTCTCTCCTGCTGTGATTGGCTCCACTGGTTCCTGGGATGCCTTGAGAACCATAATGAGAGAGGAAGGATTTGCTGCACTGTATAAGGGTCTTGGTCCTAGTCTTTTTCTGCAGGTCTCCCATGGTGCTATTCAATTTACTGCATATGAAGAACTCCGTAAAGTTATTGTTGACTTGAAGTCTAAACAAGGCACAAGTAATTCTGGAAGTTCGGATACTGTATTGAATTCACTTGACTATGCAGCCTTAGGGGCATCATCGAAAGTCGCTGCCATTCTTCTATCATATCCATTCCAGGTTATACGATCTCGATTGCAGCAACGACCTAGTTCTGAGGGAATTCCAAGATATATGGATAGCTGGCATGTAATAAGGGAAACAGCACGGTTTGAGGGTGTTCGAGGCTTCTACAGGGGAATTACACCAAACCTTCTTAAAAATGTTCCTGCTGCTTCAATAACATTTATTGTATATGAAAATAAACATTATTTGAGGTTGAAAATGTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

244

Amino Acids

26.89

Weight (kDa)

9.76

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	11 - 83	3.5e-16	Mitochondrial carrier protein
Mito_carr	PF00153	85 - 131	9.5e-12	Mitochondrial carrier protein
Mito_carr	PF00153	150 - 234	2.3e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	3 cut(s)	23, 48, 106
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	448, 561
AcyI	GRCGYC	3 cut(s)	17, 54, 99
AgsI	TTSAA	6 cut(s)	119, 356, 400, 448, 678, 721
AhdI	GACNNNNNGTC	1 cut(s)	400
AjnI	CCWGG	3 cut(s)	110, 254, 516
AluBI	AGCT	2 cut(s)	83, 582
AluI	AGCT	2 cut(s)	83, 582
Alw26I	GTCTC	2 cut(s)	24, 343
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	6 cut(s)	80, 296, 464, 491, 538, 671
ApoI	RAATTY	2 cut(s)	448, 561
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	421, 453
BbvI	GCAGC	6 cut(s)	92, 283, 476, 478, 550, 658
BceAI	ACGGC	3 cut(s)	41, 145, 180
BciT130I	CCWGG	3 cut(s)	112, 256, 518
BciVI	GTATCC	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	24, 343
BfaI	CTAG	2 cut(s)	321, 549
BfmI	CTRYAG	2 cut(s)	332, 631
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	6 cut(s)	81, 297, 465, 492, 539, 672
BlsI	GCNGC	6 cut(s)	82, 298, 466, 493, 540, 673
Bme1390I	CCNGG	3 cut(s)	112, 256, 518
Bme18I	GGWCC	1 cut(s)	317
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	55, 244, 253
BmrFI	CCNGG	3 cut(s)	112, 256, 518
BmsI	GCATC	3 cut(s)	97, 250, 485
BpuEI	CTTGAG	1 cut(s)	286
BsaHI	GRCGYC	3 cut(s)	17, 54, 99
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	255, 343
Bse118I	RCCGGY	2 cut(s)	50, 62
Bse1I	ACTGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	112, 256, 518
BseDI	CCNNGG	2 cut(s)	255, 343
BseGI	GGATG	2 cut(s)	88, 265
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	194, 546
BseNI	ACTGG	1 cut(s)	253
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	6 cut(s)	92, 283, 476, 478, 550, 658
BsgI	GTGCAG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	51, 63
BslFI	GGGAC	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	24, 343
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	527
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	3 cut(s)	23, 48, 106
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	195, 547
BspLI	GGNNCC	3 cut(s)	55, 244, 253
BspMAI	CTGCAG	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	50, 62
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	2 cut(s)	50, 62
BssECI	CCNNGG	2 cut(s)	255, 343
BssMI	GATC	1 cut(s)	527
BssNI	GRCGYC	3 cut(s)	17, 54, 99
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	3 cut(s)	112, 256, 518
Bst4CI	ACNGT	4 cut(s)	76, 303, 442, 609
BstACI	GRCGYC	3 cut(s)	17, 54, 99
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	52, 64, 220, 584
BstDEI	CTNAG	3 cut(s)	203, 469, 555
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	88, 265
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	530
BstMAI	GTCTC	2 cut(s)	24, 343
BstMBI	GATC	1 cut(s)	527
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 473
BstNI	CCWGG	3 cut(s)	112, 256, 518
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	3 cut(s)	110, 254, 516
BstSFI	CTRYAG	2 cut(s)	332, 631
BstV1I	GCAGC	6 cut(s)	92, 283, 476, 478, 550, 658
BstZI	CGGCCG	1 cut(s)	130
Bsu36I	CCTNAGG	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	88, 265
BtsI	GCAGTG	2 cut(s)	32, 38
BtsIMutI	CAGTG	4 cut(s)	32, 38, 246, 299
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	52, 64, 220, 584
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	50, 62
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	6
CsiI	ACCWGGT	1 cut(s)	110
CviAII	CATG	2 cut(s)	344, 587
CviJI	RGCY	8 cut(s)	66, 83, 132, 222, 243, 467, 582, 627
CviKI_1	RGCY	8 cut(s)	66, 83, 132, 222, 243, 467, 582, 627
DdeI	CTNAG	3 cut(s)	203, 469, 555
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
DriI	GACNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	317
Eco52I	CGGCCG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	469
EcoRI	GAATTC	2 cut(s)	448, 561
EcoRII	CCWGG	3 cut(s)	110, 254, 516
EcoT14I	CCWWGG	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	347, 590
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	343, 586
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	6 cut(s)	81, 297, 465, 492, 539, 672
FokI	GGATG	2 cut(s)	75, 272
Fsp4HI	GCNGC	6 cut(s)	81, 297, 465, 492, 539, 672
FspBI	CTAG	2 cut(s)	321, 549
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	6 cut(s)	81, 297, 465, 492, 539, 672
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	51, 63
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	3 cut(s)	17, 54, 99
Hin1II	CATG	2 cut(s)	347, 590
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	2 cut(s)	124, 394
HindII	GTYRAC	2 cut(s)	124, 394
HinfI	GANTC	2 cut(s)	135, 210
HpaII	CCGG	2 cut(s)	51, 63
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	124, 394
Hpy188I	TCNGA	3 cut(s)	150, 436, 556
Hpy188III	TCNNGA	2 cut(s)	426, 531
Hpy8I	GTNNAC	2 cut(s)	124, 394
Hpy99I	CGWCG	7 cut(s)	10, 13, 16, 62, 101, 104, 131
HpyAV	CCTTC	2 cut(s)	281, 662
HpyCH4III	ACNGT	4 cut(s)	76, 303, 442, 609
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	8 cut(s)	80, 88, 218, 299, 334, 365, 464, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 473
HpyF3I	CTNAG	3 cut(s)	203, 469, 555
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	3 cut(s)	17, 54, 99
Hsp92II	CATG	2 cut(s)	347, 590
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	2 cut(s)	50, 62
KroNI	GCCGGC	2 cut(s)	52, 64
Kzo9I	GATC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	6 cut(s)	92, 283, 476, 478, 550, 658
LweI	GCATC	3 cut(s)	97, 250, 485
MabI	ACCWGGT	1 cut(s)	110
MaeI	CTAG	2 cut(s)	321, 549
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	4 cut(s)	137, 169, 383, 491
MluCI	AATT	5 cut(s)	356, 421, 448, 561, 639
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	8 cut(s)	104, 190, 200, 277, 550, 607, 617, 708
Mph1103I	ATGCAT	1 cut(s)	90
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	2 cut(s)	50, 62
MseI	TTAA	1 cut(s)	657
MspI	CCGG	2 cut(s)	51, 63
MspR9I	CCNGG	3 cut(s)	112, 256, 518
MvaI	CCWGG	3 cut(s)	112, 256, 518
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 473
NaeI	GCCGGC	2 cut(s)	52, 64
NarI	GGCGCC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	343
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	1 cut(s)	527
NgoMIV	GCCGGC	2 cut(s)	50, 62
NlaIII	CATG	2 cut(s)	347, 590
NlaIV	GGNNCC	3 cut(s)	55, 244, 253
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdiI	GCCGGC	2 cut(s)	52, 64
PfeI	GAWTC	1 cut(s)	135
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	82, 298, 466, 493, 540, 673
PleI	GAGTC	1 cut(s)	204
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	110, 254, 516
PspGI	CCWGG	3 cut(s)	110, 254, 516
PspN4I	GGNNCC	3 cut(s)	55, 244, 253
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	6 cut(s)	81, 297, 465, 492, 539, 672
Sau3AI	GATC	1 cut(s)	527
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	112, 256, 518
SetI	ASST	9 cut(s)	85, 102, 116, 339, 522, 550, 584, 654, 719
SexAI	ACCWGGT	1 cut(s)	110
SfaNI	GCATC	3 cut(s)	97, 250, 485
SfcI	CTRYAG	2 cut(s)	332, 631
SfoI	GGCGCC	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	5 cut(s)	356, 421, 448, 561, 639
SsiI	CCGC	3 cut(s)	23, 48, 106
SspDI	GGCGCC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	321, 549
StyD4I	CCNGG	3 cut(s)	110, 254, 516
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	4 cut(s)	76, 303, 442, 609
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	5 cut(s)	96, 190, 482, 532, 622
TasI	AATT	5 cut(s)	356, 421, 448, 561, 639
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	4 cut(s)	32, 38, 253, 306
TseI	GCWGC	6 cut(s)	80, 296, 464, 491, 538, 671
TspDTI	ATGAA	2 cut(s)	384, 711
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	4 cut(s)	32, 38, 253, 306
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	448, 561
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	321, 549
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.