Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003340.1

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Forward (+)

1570 .. 3434

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003340.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgcttctggagattcttgtgcacttactgaatgtgaagattgttgctgatagtatgtacacacatcaatcttactttacaatctgcaacttaaaggttttcgtattgtttcagcaggtctcccatggtgctattcaattcactgcatatgaagaactccgtaaagttattgttgacttgaagtctaaacaaggcacaagtaattctggaagttcggatactgtattgaattcacttgactatgcagccttaggggcatcatcgaaagtcgctgccattcttctatcatatccattccaggttatacgatctcgattgcagcaacgacctagttctgagggaattccaagatatatggatagctggcatgtaataagggaaacagcacggtttgagggtgttcgaggcttctacaggggaattacaccaaaccttctcaaaaatgttcctgctgcttcaataacatttattgtatatgaaaatgtactgaaatttctaaaattagctaaaaggaacgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

173

Amino Acids

19.56

Weight (kDa)

9.6

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AcsI	RAATTY	3 cut(s)	229, 342, 491
AfaI	GTAC	2 cut(s)	59, 486
AgsI	TTSAA	4 cut(s)	137, 181, 229, 459
AhdI	GACNNNNNGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	2 cut(s)	363, 506
AluI	AGCT	2 cut(s)	363, 506
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	20
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	4 cut(s)	245, 272, 319, 452
ApoI	RAATTY	3 cut(s)	229, 342, 491
AxyI	CCTNAGG	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	202, 234
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	257, 259, 331, 439
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	106
BfuI	GTATCC	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	246, 273, 320, 453
BlsI	GCNGC	4 cut(s)	247, 274, 321, 454
Bme1390I	CCNGG	1 cut(s)	299
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	124
Bse21I	CCTNAGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	257, 259, 331, 439
BsiHKAI	GWGCWC	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	308
Bsp19I	CCATGG	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	223, 390
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	2 cut(s)	250, 336
BstDSI	CCRYGG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	257, 259, 331, 439
Bsu36I	CCTNAGG	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	58, 485
CviAII	CATG	2 cut(s)	125, 368
CviJI	RGCY	4 cut(s)	248, 363, 408, 506
CviKI_1	RGCY	4 cut(s)	248, 363, 408, 506
CviQI	GTAC	2 cut(s)	58, 485
DdeI	CTNAG	2 cut(s)	250, 336
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
DriI	GACNNNNNGTC	1 cut(s)	181
Eam1105I	GACNNNNNGTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	250
EcoRI	GAATTC	2 cut(s)	229, 342
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	128, 371
FatI	CATG	2 cut(s)	124, 367
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	246, 273, 320, 453
Fsp4HI	GCNGC	4 cut(s)	246, 273, 320, 453
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	4 cut(s)	246, 273, 320, 453
GsuI	CTGGAG	1 cut(s)	29
Hin1II	CATG	2 cut(s)	128, 371
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	3 cut(s)	22, 60, 175
Hpy188I	TCNGA	2 cut(s)	217, 337
Hpy188III	TCNNGA	3 cut(s)	8, 207, 312
Hpy8I	GTNNAC	3 cut(s)	22, 60, 175
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	223, 390
HpyCH4V	TGCA	5 cut(s)	22, 87, 146, 245, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	250, 336
Hsp92II	CATG	2 cut(s)	128, 371
Kzo9I	GATC	1 cut(s)	308
LpnPI	CCDG	7 cut(s)	101, 192, 284, 311, 349, 400, 462
Lsp1109I	GCAGC	4 cut(s)	257, 259, 331, 439
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	1 cut(s)	330
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	3 cut(s)	49, 164, 272
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	7 cut(s)	137, 202, 229, 342, 420, 491, 500
MnlI	CCTC	3 cut(s)	331, 388, 398
MseI	TTAA	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	128, 371
NspI	RCATGY	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	247, 274, 321, 454
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
RsaI	GTAC	2 cut(s)	59, 486
RsaNI	GTAC	2 cut(s)	58, 485
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	4 cut(s)	246, 273, 320, 453
Sau3AI	GATC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	7 cut(s)	99, 120, 303, 331, 365, 435, 508
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	412
Sse9I	AATT	7 cut(s)	137, 202, 229, 342, 420, 491, 500
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	223, 390
TaqI	TCGA	3 cut(s)	263, 313, 403
TasI	AATT	7 cut(s)	137, 202, 229, 342, 420, 491, 500
TatI	WGTACW	2 cut(s)	57, 484
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	4 cut(s)	245, 272, 319, 452
TspDTI	ATGAA	2 cut(s)	165, 492
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	20
XapI	RAATTY	3 cut(s)	229, 342, 491
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.