Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Reverse (-)

11700441 .. 11704704

Gene Structure 4264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCGTCGGCGTCGCCGCAGTGGCAGTGGGAAAACGCCACCGCCGGCGCCGTCGCCGGCTTCGCAACCGTCGCCGCTATGCATCCCCTCGACGTCGTCCGCACCAGGTTTCAAGTCAACGACGGCCGAATCTCCAATCTTCCGACTTACAAGAACACGGCGAACGCTATCTTCACCATTGCTCGATTGGAGGGACTGAGAGGACTCTACGCAGGCTTCTCTCCTGCTGTGATTGGTTCCACTGTTTCCTGGGGTTTATACTTCTTCTTCTACGGAAGAGCCAAACAGAGGTATTCTAAAAACGGGGATGAGAAGCTGAGTCCTGGTCTTCATCTTGCTTCTGCAGCAGAAGCTGGTGCTCTGGTCTCCCATGGTGCTATTCAATTCACTGCATATGAAGAACTCCGTAAAGTTATTGTTGACTTGAAATCTAAAAAAGGCACAAGTAATTCTGGAAGTTCGGATACTGTATTGAATTCACTTGACTATGCAGCCTTAGGGGCATCATCGAAAGTCGCTGCCATTCTTCTATCATATCCATTCCAGGTTATACGATCTCGATTGCAGCAACGACCTAGTTCTGAGGGAATTCCAAGATATATGGATAGCTGGCATGTAATAAGGGAAACAGCACGGTTTGAGGGTGTTCGAGGCTTCTACAGGGGAATTACACCAAACCTTCTCAAAAATGTTCCTGCTGCTTCAATAACATTTATTGTATATGAAAATAAACATTATATGAGGTTGAAAATGTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

254

Amino Acids

27.91

Weight (kDa)

9.85

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 100	3.4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	159 - 243	2.5e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	4 cut(s)	17, 42, 75, 100
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	475, 588
AcyI	GRCGYC	3 cut(s)	11, 48, 93
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	6 cut(s)	113, 383, 427, 475, 705, 748
AjnI	CCWGG	4 cut(s)	104, 248, 322, 543
AluBI	AGCT	3 cut(s)	316, 353, 609
AluI	AGCT	3 cut(s)	316, 353, 609
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	5 cut(s)	344, 491, 518, 565, 698
ApoI	RAATTY	2 cut(s)	475, 588
AspLEI	GCGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	448, 480
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	5 cut(s)	356, 503, 505, 577, 685
BceAI	ACGGC	3 cut(s)	35, 139, 174
BciT130I	CCWGG	4 cut(s)	106, 250, 324, 545
BciVI	GTATCC	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	342, 658
BfoI	RGCGCY	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	457
BglI	GCCNNNNNGGC	2 cut(s)	22, 500
BisI	GCNGC	7 cut(s)	17, 75, 345, 492, 519, 566, 699
BlsI	GCNGC	7 cut(s)	18, 76, 346, 493, 520, 567, 700
Bme1390I	CCNGG	4 cut(s)	106, 250, 324, 545
BmiI	GGNNCC	2 cut(s)	49, 238
BmrFI	CCNGG	4 cut(s)	106, 250, 324, 545
BmsI	GCATC	2 cut(s)	91, 512
BpiI	GAAGAC	1 cut(s)	320
BsaHI	GRCGYC	3 cut(s)	11, 48, 93
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	249, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	2 cut(s)	44, 56
Bse21I	CCTNAGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	4 cut(s)	106, 250, 324, 545
BseDI	CCNNGG	2 cut(s)	249, 370
BseGI	GGATG	2 cut(s)	82, 313
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	188, 308, 573
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	5 cut(s)	356, 503, 505, 577, 685
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	45, 57
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	554
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	4 cut(s)	17, 42, 75, 100
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	189, 309, 574
BspLI	GGNNCC	2 cut(s)	49, 238
BspMAI	CTGCAG	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	2 cut(s)	44, 56
BssAI	RCCGGY	2 cut(s)	44, 56
BssECI	CCNNGG	2 cut(s)	249, 370
BssMI	GATC	1 cut(s)	554
BssNI	GRCGYC	3 cut(s)	11, 48, 93
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	4 cut(s)	106, 250, 324, 545
Bst4CI	ACNGT	4 cut(s)	70, 244, 469, 636
Bst6I	CTCTTC	1 cut(s)	271
BstACI	GRCGYC	3 cut(s)	11, 48, 93
BstC8I	GCNNGC	4 cut(s)	46, 58, 214, 611
BstDEI	CTNAG	4 cut(s)	197, 317, 496, 582
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	82, 313
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	557
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	554
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 62, 71, 344, 350, 500
BstNI	CCWGG	4 cut(s)	106, 250, 324, 545
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	104, 248, 322, 543
BstSFI	CTRYAG	2 cut(s)	342, 658
BstV1I	GCAGC	5 cut(s)	356, 503, 505, 577, 685
BstV2I	GAAGAC	1 cut(s)	320
BstZI	CGGCCG	1 cut(s)	124
Bsu36I	CCTNAGG	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	82, 313
BtsI	GCAGTG	3 cut(s)	26, 32, 387
BtsIMutI	CAGTG	4 cut(s)	26, 32, 240, 387
Cac8I	GCNNGC	4 cut(s)	46, 58, 214, 611
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	44, 56
CsiI	ACCWGGT	1 cut(s)	104
CviAII	CATG	2 cut(s)	371, 614
CviJI	RGCY	9 cut(s)	60, 126, 216, 281, 316, 353, 494, 609, 654
CviKI_1	RGCY	9 cut(s)	60, 126, 216, 281, 316, 353, 494, 609, 654
DdeI	CTNAG	4 cut(s)	197, 317, 496, 582
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	1 cut(s)	556
DpnII	GATC	1 cut(s)	554
EaeI	YGGCCR	1 cut(s)	124
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	370
Eco52I	CGGCCG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	496
EcoRI	GAATTC	2 cut(s)	475, 588
EcoRII	CCWGG	4 cut(s)	104, 248, 322, 543
EcoT14I	CCWWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	374, 617
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	2 cut(s)	370, 613
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	7 cut(s)	17, 75, 345, 492, 519, 566, 699
FokI	GGATG	2 cut(s)	69, 320
Fsp4HI	GCNGC	7 cut(s)	17, 75, 345, 492, 519, 566, 699
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	7 cut(s)	17, 75, 345, 492, 519, 566, 699
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	45, 57
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	3 cut(s)	11, 48, 93
Hin1II	CATG	2 cut(s)	374, 617
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	118, 421
HindII	GTYRAC	2 cut(s)	118, 421
HinfI	GANTC	3 cut(s)	129, 204, 319
HpaII	CCGG	2 cut(s)	45, 57
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	118, 421
Hpy188I	TCNGA	3 cut(s)	144, 463, 583
Hpy188III	TCNNGA	2 cut(s)	453, 558
Hpy8I	GTNNAC	2 cut(s)	118, 421
Hpy99I	CGWCG	7 cut(s)	10, 16, 56, 74, 95, 98, 125
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	4 cut(s)	70, 244, 469, 636
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	82, 344, 392, 491, 565
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 62, 71, 344, 350, 500
HpyF3I	CTNAG	4 cut(s)	197, 317, 496, 582
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	3 cut(s)	11, 48, 93
Hsp92II	CATG	2 cut(s)	374, 617
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
KroI	GCCGGC	2 cut(s)	44, 56
KroNI	GCCGGC	2 cut(s)	46, 58
Kzo9I	GATC	1 cut(s)	554
LguI	GCTCTTC	1 cut(s)	271
Lsp1109I	GCAGC	5 cut(s)	356, 503, 505, 577, 685
LweI	GCATC	2 cut(s)	91, 512
MabI	ACCWGGT	1 cut(s)	104
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	556
MboI	GATC	1 cut(s)	554
MboII	GAAGA	8 cut(s)	131, 163, 256, 259, 288, 320, 410, 518
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	5 cut(s)	383, 448, 475, 588, 666
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	198, 328
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	98, 184, 194, 282, 577, 634, 644, 735
Mph1103I	ATGCAT	1 cut(s)	84
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	2 cut(s)	44, 56
MspI	CCGG	2 cut(s)	45, 57
MspR9I	CCNGG	4 cut(s)	106, 250, 324, 545
MvaI	CCWGG	4 cut(s)	106, 250, 324, 545
MwoI	GCNNNNNNNGC	6 cut(s)	22, 62, 71, 344, 350, 500
NaeI	GCCGGC	2 cut(s)	46, 58
NarI	GGCGCC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	554
NgoMIV	GCCGGC	2 cut(s)	44, 56
NlaIII	CATG	2 cut(s)	374, 617
NlaIV	GGNNCC	2 cut(s)	49, 238
NsiI	ATGCAT	1 cut(s)	84
NspI	RCATGY	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	271
PdiI	GCCGGC	2 cut(s)	46, 58
PfeI	GAWTC	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	7 cut(s)	18, 76, 346, 493, 520, 567, 700
PleI	GAGTC	2 cut(s)	198, 327
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	2 cut(s)	198, 327
Psp6I	CCWGG	4 cut(s)	104, 248, 322, 543
PspGI	CCWGG	4 cut(s)	104, 248, 322, 543
PspN4I	GGNNCC	2 cut(s)	49, 238
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	271
SatI	GCNGC	7 cut(s)	17, 75, 345, 492, 519, 566, 699
Sau3AI	GATC	1 cut(s)	554
SchI	GAGTC	2 cut(s)	198, 328
ScrFI	CCNGG	4 cut(s)	106, 250, 324, 545
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	91, 512
SfcI	CTRYAG	2 cut(s)	342, 658
SfoI	GGCGCC	1 cut(s)	49
SgrAI	CRCCGGYG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	383, 448, 475, 588, 666
SsiI	CCGC	4 cut(s)	17, 42, 75, 100
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	4 cut(s)	104, 248, 322, 543
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	4 cut(s)	70, 244, 469, 636
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	5 cut(s)	90, 184, 509, 559, 649
TasI	AATT	5 cut(s)	383, 448, 475, 588, 666
TauI	GCSGC	2 cut(s)	19, 77
TfiI	GAWTC	1 cut(s)	129
TscAI	CASTG	4 cut(s)	26, 32, 247, 394
TseI	GCWGC	5 cut(s)	344, 491, 518, 565, 698
TspDTI	ATGAA	3 cut(s)	320, 411, 738
TspGWI	ACGGA	2 cut(s)	288, 395
TspRI	CASTG	4 cut(s)	26, 32, 247, 394
Tth111I	GACNNNGTC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	475, 588
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XspI	CTAG	1 cut(s)	576
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.