MD02G1138700.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
11592800 .. 11596699
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1138700.v1.1.491

Sequence Viewer

Length: 933 bp
ATGTCGTCAGCGTCGCGGTGGCAGTGGGAAACCGCCACCGCCGGCGCCGTCGCAGGATTCGCCACCGTCGCCGCTATGCATCCCCTCGACGTTGTCCGGACCAGATTTCAAGTCAACGACGGTCGAGTCTTGAATCTTCCGACTTACAAGAACACGGCTCACGCCATTTTTACCATTGCTCGATTGGAGGGCCTGAGAGGACTCTACGCAGGCTTCTCTCCTGCGGTTCTAGGCTCCACTGTTTCATGGGGTTTATATTTCTTCTTCTATGGAAGAGCAAAAGAAAGGTATTCGAAGGACAGGGAAAAGCAGCTGAGCGCTGGCCTTCATCTTGCTTCTGCGGCAGAAGCTGGTGCTTTGGTTTCCTTGTGCACAAATCCTATTTGGCTTGTAAAAACAAGATTGCAGCTTCAGACTCCTCTCCATCAAACTCGACCATATTCTGGGTTTTATGATGCCTTAAGAACCATAATCAGAGAGGAAGGGTGGGCTGCGCTTTATAAAGGTCTTCTTCCCAGTCTCTTTCTGGTTTCTCATGGTGCTATTCAATTCACAGCATATGAAGAACTCCGTAAAATCGTTGTTGACTTCAAGTCTAAAAGACGCAGAACGCATTCTGGAAGTGCTGATACAGTGCTGAATTCAGTTGACTATGCAGCATTGGGTGGATCATCTAAAGTTGCGGCCATTCTTCTATCATATCCATTCCAGGTGATACGATCTCGATTGCAGCAACGACCTAGTAGCGAAGGAATTCCAAGATATATGGATAGCTGGCATGTAGTAAGGGAAACTGCACGGTTTGAGGGCATTCGAGGTTTCTACAAGGGAATCACACCAAATCTTCTGAAAAATGTTCCTGCTTCTTCGATCACTTTTATTGTATACGAAAATGTACTGAAATTTCTAAAATTGGCTAGAACGAACGAGTAA

Protein Analysis

311

Amino Acids

34.63

Weight (kDa)

10.05

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 9 - 99 6.6e-21 Mitochondrial carrier protein
Mito_carr PF00153 104 - 195 7e-22 Mitochondrial carrier protein
Mito_carr PF00153 214 - 304 2.4e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AasI GACNNNNNNGTC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 443
AccI GTMKAC 1 cut(s) 885
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 7 cut(s) 16, 33, 39, 72, 224, 341, 683
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 3 cut(s) 640, 753, 902
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 897
AfeI AGCGCT 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 443
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 4 cut(s) 110, 133, 548, 592
AhdI GACNNNNNGTC 1 cut(s) 592
AjnI CCWGG 1 cut(s) 708
AluBI AGCT 4 cut(s) 313, 350, 409, 774
AluI AGCT 4 cut(s) 313, 350, 409, 774
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 524
Alw44I GTGCAC 1 cut(s) 370
AlwI GGATC 1 cut(s) 676
AlwNI CAGNNNCTG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 96
Aor51HI AGCGCT 1 cut(s) 319
AoxI GGCC 3 cut(s) 190, 322, 684
ApaLI GTGCAC 1 cut(s) 370
ApeKI GCWGC 5 cut(s) 310, 406, 491, 656, 730
ApoI RAATTY 3 cut(s) 640, 753, 902
Asp700I GAANNNNTTC 2 cut(s) 613, 753
AspLEI GCGC 3 cut(s) 47, 320, 496
AspS9I GGNCC 2 cut(s) 99, 190
AsuHPI GGTGA 1 cut(s) 724
AsuII TTCGAA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 613, 645
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 5 cut(s) 322, 418, 478, 668, 742
BccI CCATC 1 cut(s) 432
BceAI ACGGC 2 cut(s) 32, 171
BciT130I CCWGG 1 cut(s) 710
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 3 cut(s) 230, 741, 918
BfoI RGCGCY 2 cut(s) 48, 321
BfrI CTTAAG 1 cut(s) 460
BisI GCNGC 8 cut(s) 72, 311, 342, 407, 492, 657, 684, 731
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 8 cut(s) 73, 312, 343, 408, 493, 658, 685, 732
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 1 cut(s) 99
BmeRI GACNNNNNGTC 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 99, 190
BmiI GGNNCC 2 cut(s) 46, 235
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 88, 445
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 710
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 185, 305
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 5 cut(s) 322, 418, 478, 668, 742
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 192, 324, 686
BshNI GGYRCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 2 cut(s) 42, 97
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 524
BsmI GAATGC 2 cut(s) 613, 810
BsnI GGCC 3 cut(s) 192, 324, 686
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 374
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 3 cut(s) 668, 719, 870
Bsp1720I GCTNAGC 1 cut(s) 314
BspACI CCGC 7 cut(s) 16, 33, 39, 72, 224, 341, 683
BspANI GGCC 3 cut(s) 192, 324, 686
BspCNI CTCAG 2 cut(s) 186, 306
BspEI TCCGGA 1 cut(s) 96
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 46, 235
BspPI GGATC 1 cut(s) 676
BspQI GCTCTTC 1 cut(s) 268
BspT104I TTCGAA 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 3 cut(s) 668, 719, 870
BssNAI GTATAC 1 cut(s) 886
BssNI GRCGYC 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 886
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 5 cut(s) 67, 122, 241, 634, 801
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 460
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 4 cut(s) 43, 211, 322, 776
BstDEI CTNAG 2 cut(s) 194, 314
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 2 cut(s) 48, 321
BstHHI GCGC 3 cut(s) 47, 320, 496
BstKTI GATC 3 cut(s) 671, 722, 873
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 3 cut(s) 668, 719, 870
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 341, 347
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 374
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 5 cut(s) 322, 418, 478, 668, 742
BstV2I GAAGAC 1 cut(s) 500
BstZ17I GTATAC 1 cut(s) 886
BsuRI GGCC 3 cut(s) 192, 324, 686
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 3 cut(s) 29, 237, 639
Cac8I GCNNGC 4 cut(s) 43, 211, 322, 776
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 3 cut(s) 47, 320, 496
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 99, 190
CseI GACGC 1 cut(s) 612
Csp6I GTAC 1 cut(s) 896
CviAII CATG 3 cut(s) 246, 536, 779
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 2 cut(s) 194, 314
DinI GGCGCC 1 cut(s) 46
DpnI GATC 3 cut(s) 670, 721, 872
DpnII GATC 3 cut(s) 668, 719, 870
DrdI GACNNNNNNGTC 1 cut(s) 125
DriI GACNNNNNGTC 1 cut(s) 592
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 99
Eco47III AGCGCT 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 2 cut(s) 640, 753
EcoRII CCWGG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 81
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaeI CATG 3 cut(s) 249, 539, 782
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 3 cut(s) 245, 535, 778
FauNDI CATATG 1 cut(s) 559
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 8 cut(s) 72, 311, 342, 407, 492, 657, 684, 731
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 8 cut(s) 72, 311, 342, 407, 492, 657, 684, 731
FspBI CTAG 3 cut(s) 230, 741, 918
GlaI GCGC 3 cut(s) 46, 319, 495
GluI GCNGC 8 cut(s) 72, 311, 342, 407, 492, 657, 684, 731
HaeII RGCGCY 2 cut(s) 48, 321
HaeIII GGCC 3 cut(s) 192, 324, 686
HapII CCGG 2 cut(s) 42, 97
HgaI GACGC 1 cut(s) 612
HhaI GCGC 3 cut(s) 47, 320, 496
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 3 cut(s) 249, 539, 782
Hin6I GCGC 3 cut(s) 45, 318, 494
HinP1I GCGC 3 cut(s) 45, 318, 494
HincII GTYRAC 3 cut(s) 115, 586, 649
HindII GTYRAC 3 cut(s) 115, 586, 649
HinfI GANTC 6 cut(s) 57, 126, 133, 201, 415, 831
HpaII CCGG 2 cut(s) 42, 97
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 5 cut(s) 115, 372, 586, 649, 886
Hpy188I TCNGA 4 cut(s) 141, 414, 476, 849
Hpy188III TCNNGA 4 cut(s) 97, 130, 618, 723
Hpy8I GTNNAC 5 cut(s) 115, 372, 586, 649, 886
Hpy99I CGWCG 5 cut(s) 16, 53, 71, 92, 122
HpyAV CCTTC 4 cut(s) 289, 335, 476, 743
HpyCH4III ACNGT 5 cut(s) 67, 122, 241, 634, 801
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 6 cut(s) 79, 372, 406, 656, 730, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 341, 347
HpyF3I CTNAG 2 cut(s) 194, 314
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 3 cut(s) 249, 539, 782
HspAI GCGC 3 cut(s) 45, 318, 494
KasI GGCGCC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 96
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 668, 719, 870
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 5 cut(s) 322, 418, 478, 668, 742
LweI GCATC 2 cut(s) 88, 445
MaeI CTAG 3 cut(s) 230, 741, 918
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 670, 721, 872
MboI GATC 3 cut(s) 668, 719, 870
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 5 cut(s) 548, 640, 753, 902, 911
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 3 cut(s) 135, 195, 409
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 7 cut(s) 95, 181, 191, 429, 472, 799, 809
Mph1103I ATGCAT 1 cut(s) 81
MreI CGCCGGCG 1 cut(s) 41
MroI TCCGGA 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 613, 753
MseI TTAA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 313
MspCI CTTAAG 1 cut(s) 460
MspI CCGG 2 cut(s) 42, 97
MspR9I CCNGG 1 cut(s) 710
Mva1269I GAATGC 2 cut(s) 613, 810
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 341, 347
NaeI GCCGGC 1 cut(s) 43
NarI GGCGCC 1 cut(s) 45
NdeI CATATG 1 cut(s) 559
NdeII GATC 3 cut(s) 668, 719, 870
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 249, 539, 782
NlaIV GGNNCC 2 cut(s) 46, 235
NsiI ATGCAT 1 cut(s) 81
NspI RCATGY 1 cut(s) 782
NspV TTCGAA 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 268
PctI GAATGC 2 cut(s) 613, 810
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 2 cut(s) 613, 753
PfeI GAWTC 3 cut(s) 57, 133, 831
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 8 cut(s) 73, 312, 343, 408, 493, 658, 685, 732
PleI GAGTC 3 cut(s) 134, 195, 409
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 3 cut(s) 134, 195, 409
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 46, 235
PspPI GGNCC 2 cut(s) 99, 190
PstNI CAGNNNCTG 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 8 cut(s) 72, 311, 342, 407, 492, 657, 684, 731
Sau3AI GATC 3 cut(s) 668, 719, 870
Sau96I GGNCC 2 cut(s) 99, 190
SchI GAGTC 3 cut(s) 135, 195, 409
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 2 cut(s) 88, 445
SfoI GGCGCC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 293
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 5 cut(s) 548, 640, 753, 902, 911
SsiI CCGC 7 cut(s) 16, 33, 39, 72, 224, 341, 683
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 3 cut(s) 230, 741, 918
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 5 cut(s) 67, 122, 241, 634, 801
TaiI ACGT 1 cut(s) 93
TaqI TCGA 8 cut(s) 87, 124, 181, 293, 433, 724, 814, 869
TasI AATT 5 cut(s) 548, 640, 753, 902, 911
TatI WGTACW 1 cut(s) 895
TauI GCSGC 3 cut(s) 74, 344, 686
TfiI GAWTC 3 cut(s) 57, 133, 831
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 3 cut(s) 29, 244, 639
TseI GCWGC 5 cut(s) 310, 406, 491, 656, 730
TspDTI ATGAA 3 cut(s) 234, 317, 576
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 3 cut(s) 29, 244, 639
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 3 cut(s) 640, 753, 902
XceI RCATGY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 2 cut(s) 181, 523
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 2 cut(s) 613, 753
XspI CTAG 3 cut(s) 230, 741, 918
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.