Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Forward (+)

80402024 .. 80406623

Gene Structure 4600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCGTCGTCGCCGCAGTGGCAGTGGGAAAACCCCACCGCCGGCGCCGTCGCCGGCTTCGCAACCGTCGCCGCTATGCATCCCCTCGACGTCGTCCGCACCAGGTTTCAAGTCAACGACGGCCGAATCTCCAATCTTCCGACTTACAAGAACACGGCGAACGCTATCTTCACCATTGCTCGATTGGAGGGACTTAGAGGACTCTATGCAGGCTTCTCTCCTGCTGTGATTGGCTCCACTGTTTCCTGGGGTTTATATTTCTTCTTCTATGGAAGAGCCAAACAGAGGTATTCTAAAAACGGGGATGAGAAGCTGAGTCCTGGTCTTCATCTTGCTTCCGCAGCAGAAGCTGGTGCTCTGGTTTCTTTGTGCACCAATCCTATTTGGCTTGTAAAAACAAGACTGCAGCTTCAGACTCCTCTCCATCAAACACGCCTATATTCTGGTTTTTATGATGCCTTGAGAACCATAATGAGAGAGGAAGGATTTGCTGCACTGTATAAGGGTCTTGGTCCTAGTCTTTTTCTGCAGGTCTCCCATGGTGCTATTCAATTCACTGCATATGAAGAACTCCGTAAAGTTATTGTTGACTTGAAGTCTAAAAAAGGCACAAGTAATTCTGGAAGTTCGGATACTGTATTGAATTCACTTGACTATGCAGCCTTAGGGGCATCATCGAAAGTCGCTGCCATTCTTCTATCGTATCCATTCCAGGTTATACGATCTCGATTGCAGCAACGACCTAGTTCTGAGGGAATTCCAAGATATATGGATAGCTGGCATGTAATAAGGGAAACAGCACGGTTTGAGGGTGTTCGAGGCTTCTACAGGGGAATTACACCAAACCTTCTCAAAAATGTTCCTGCTGCTTCAATAACATTTATTGTATATGAAAATGTACTGAAATTTCTAAAATTAGCTAAAAGGAACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

311

Amino Acids

34.44

Weight (kDa)

9.91

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 99	1.7e-20	Mitochondrial carrier protein
Mito_carr	PF00153	104 - 196	2e-23	Mitochondrial carrier protein
Mito_carr	PF00153	215 - 305	2e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	44
AciI	CCGC	5 cut(s)	14, 39, 72, 97, 339
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	643, 756, 905
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	2 cut(s)	45, 90
AfaI	GTAC	1 cut(s)	900
AfiI	CCNNNNNNNGG	2 cut(s)	41, 285
AgsI	TTSAA	5 cut(s)	110, 551, 595, 643, 873
AhdI	GACNNNNNGTC	1 cut(s)	595
AjnI	CCWGG	4 cut(s)	101, 245, 319, 711
AluBI	AGCT	5 cut(s)	313, 350, 409, 777, 920
AluI	AGCT	5 cut(s)	313, 350, 409, 777, 920
Alw21I	GWGCWC	2 cut(s)	358, 374
Alw26I	GTCTC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	121
ApaLI	GTGCAC	1 cut(s)	370
ApeKI	GCWGC	7 cut(s)	341, 406, 491, 659, 686, 733, 866
ApoI	RAATTY	3 cut(s)	643, 756, 905
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	664
BaeGI	GKGCMC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	616, 648
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	358, 374
BbvI	GCAGC	7 cut(s)	353, 418, 478, 671, 673, 745, 853
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	3 cut(s)	32, 136, 171
BciT130I	CCWGG	4 cut(s)	103, 247, 321, 713
BciVI	GTATCC	2 cut(s)	625, 714
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	2 cut(s)	516, 744
BfmI	CTRYAG	3 cut(s)	404, 527, 826
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	2 cut(s)	625, 714
BglI	GCCNNNNNGGC	2 cut(s)	19, 668
BisI	GCNGC	9 cut(s)	14, 72, 342, 407, 492, 660, 687, 734, 867
BlsI	GCNGC	9 cut(s)	15, 73, 343, 408, 493, 661, 688, 735, 868
Bme1390I	CCNGG	4 cut(s)	103, 247, 321, 713
Bme18I	GGWCC	1 cut(s)	512
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	46, 235
BmrFI	CCNGG	4 cut(s)	103, 247, 321, 713
BmsI	GCATC	3 cut(s)	88, 445, 680
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	45, 90
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	246, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 285
Bse118I	RCCGGY	2 cut(s)	41, 53
Bse21I	CCTNAGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	4 cut(s)	103, 247, 321, 713
BseDI	CCNNGG	2 cut(s)	246, 538
BseGI	GGATG	2 cut(s)	79, 310
BseLI	CCNNNNNNNGG	2 cut(s)	41, 285
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	305, 741
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	374
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	7 cut(s)	353, 418, 478, 671, 673, 745, 853
BsgI	GTGCAG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	358, 374
BsiSI	CCGG	2 cut(s)	42, 54
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	41, 285
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	358, 374
Bsp143I	GATC	1 cut(s)	722
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	5 cut(s)	14, 39, 72, 97, 339
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	306, 742
BspLI	GGNNCC	2 cut(s)	46, 235
BspMAI	CTGCAG	2 cut(s)	408, 531
BspMI	ACCTGC	1 cut(s)	520
BspQI	GCTCTTC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	41, 53
BssAI	RCCGGY	2 cut(s)	41, 53
BssECI	CCNNGG	2 cut(s)	246, 538
BssMI	GATC	1 cut(s)	722
BssNI	GRCGYC	2 cut(s)	45, 90
BssT1I	CCWWGG	1 cut(s)	538
Bst2UI	CCWGG	4 cut(s)	103, 247, 321, 713
Bst4CI	ACNGT	5 cut(s)	67, 241, 498, 637, 804
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	2 cut(s)	45, 90
BstC8I	GCNNGC	4 cut(s)	43, 55, 211, 779
BstDEI	CTNAG	4 cut(s)	194, 314, 664, 750
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	79, 310
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	725
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	722
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 59, 68, 341, 347, 668
BstNI	CCWGG	4 cut(s)	103, 247, 321, 713
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	4 cut(s)	101, 245, 319, 711
BstSFI	CTRYAG	3 cut(s)	404, 527, 826
BstSLI	GKGCMC	1 cut(s)	374
BstV1I	GCAGC	7 cut(s)	353, 418, 478, 671, 673, 745, 853
BstV2I	GAAGAC	1 cut(s)	317
BstZI	CGGCCG	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	664
BsuI	GTATCC	2 cut(s)	625, 714
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	79, 310
BtsI	GCAGTG	3 cut(s)	23, 29, 555
BtsIMutI	CAGTG	5 cut(s)	23, 29, 237, 494, 555
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	4 cut(s)	43, 55, 211, 779
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	2 cut(s)	41, 53
Cfr13I	GGNCC	1 cut(s)	512
CsiI	ACCWGGT	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	2 cut(s)	539, 782
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	4 cut(s)	194, 314, 664, 750
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	1 cut(s)	724
DpnII	GATC	1 cut(s)	722
DriI	GACNNNNNGTC	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	121
EagI	CGGCCG	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	268
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	538
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	512
Eco52I	CGGCCG	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	664
EcoRI	GAATTC	2 cut(s)	643, 756
EcoRII	CCWGG	4 cut(s)	101, 245, 319, 711
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	2 cut(s)	542, 785
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	2 cut(s)	538, 781
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	9 cut(s)	14, 72, 342, 407, 492, 660, 687, 734, 867
FokI	GGATG	2 cut(s)	66, 317
Fsp4HI	GCNGC	9 cut(s)	14, 72, 342, 407, 492, 660, 687, 734, 867
FspBI	CTAG	2 cut(s)	516, 744
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	9 cut(s)	14, 72, 342, 407, 492, 660, 687, 734, 867
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	42, 54
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	45, 90
Hin1II	CATG	2 cut(s)	542, 785
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	115, 589
HindII	GTYRAC	2 cut(s)	115, 589
HinfI	GANTC	4 cut(s)	126, 201, 316, 415
HpaII	CCGG	2 cut(s)	42, 54
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	115, 372, 589
Hpy188I	TCNGA	4 cut(s)	141, 414, 631, 751
Hpy188III	TCNNGA	2 cut(s)	621, 726
Hpy8I	GTNNAC	3 cut(s)	115, 372, 589
Hpy99I	CGWCG	7 cut(s)	10, 13, 53, 71, 92, 95, 122
HpyAV	CCTTC	2 cut(s)	476, 857
HpyCH4III	ACNGT	5 cut(s)	67, 241, 498, 637, 804
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	9 cut(s)	79, 209, 372, 406, 494, 529, 560, 659, 733
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 59, 68, 341, 347, 668
HpyF3I	CTNAG	4 cut(s)	194, 314, 664, 750
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	2 cut(s)	45, 90
Hsp92II	CATG	2 cut(s)	542, 785
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	2 cut(s)	41, 53
KroNI	GCCGGC	2 cut(s)	43, 55
Kzo9I	GATC	1 cut(s)	722
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	7 cut(s)	353, 418, 478, 671, 673, 745, 853
LweI	GCATC	3 cut(s)	88, 445, 680
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	2 cut(s)	516, 744
MaeII	ACGT	1 cut(s)	90
MalI	GATC	1 cut(s)	724
MboI	GATC	1 cut(s)	722
MboII	GAAGA	8 cut(s)	128, 160, 253, 256, 285, 317, 578, 686
MhlI	GDGCHC	2 cut(s)	358, 374
MluCI	AATT	7 cut(s)	551, 616, 643, 756, 834, 905, 914
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	195, 325, 409
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	9 cut(s)	95, 181, 191, 279, 429, 472, 745, 802, 812
Mph1103I	ATGCAT	1 cut(s)	81
MreI	CGCCGGCG	1 cut(s)	41
MroNI	GCCGGC	2 cut(s)	41, 53
MspI	CCGG	2 cut(s)	42, 54
MspR9I	CCNGG	4 cut(s)	103, 247, 321, 713
MvaI	CCWGG	4 cut(s)	103, 247, 321, 713
MwoI	GCNNNNNNNGC	6 cut(s)	19, 59, 68, 341, 347, 668
NaeI	GCCGGC	2 cut(s)	43, 55
NarI	GGCGCC	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	1 cut(s)	722
NgoMIV	GCCGGC	2 cut(s)	41, 53
NlaIII	CATG	2 cut(s)	542, 785
NlaIV	GGNNCC	2 cut(s)	46, 235
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	268
PdiI	GCCGGC	2 cut(s)	43, 55
PfeI	GAWTC	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	9 cut(s)	15, 73, 343, 408, 493, 661, 688, 735, 868
PleI	GAGTC	3 cut(s)	195, 324, 409
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	195, 324, 409
Psp6I	CCWGG	4 cut(s)	101, 245, 319, 711
PspGI	CCWGG	4 cut(s)	101, 245, 319, 711
PspN4I	GGNNCC	2 cut(s)	46, 235
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	2 cut(s)	408, 531
PstNI	CAGNNNCTG	1 cut(s)	350
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
SapI	GCTCTTC	1 cut(s)	268
SatI	GCNGC	9 cut(s)	14, 72, 342, 407, 492, 660, 687, 734, 867
Sau3AI	GATC	1 cut(s)	722
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	3 cut(s)	195, 325, 409
ScrFI	CCNGG	4 cut(s)	103, 247, 321, 713
SduI	GDGCHC	2 cut(s)	358, 374
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	88, 445, 680
SfcI	CTRYAG	3 cut(s)	404, 527, 826
SfoI	GGCGCC	1 cut(s)	46
SgrAI	CRCCGGYG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	7 cut(s)	551, 616, 643, 756, 834, 905, 914
SsiI	CCGC	5 cut(s)	14, 39, 72, 97, 339
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	516, 744
StyD4I	CCNGG	4 cut(s)	101, 245, 319, 711
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	5 cut(s)	67, 241, 498, 637, 804
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	5 cut(s)	87, 181, 677, 727, 817
TasI	AATT	7 cut(s)	551, 616, 643, 756, 834, 905, 914
TatI	WGTACW	1 cut(s)	898
TauI	GCSGC	2 cut(s)	16, 74
TfiI	GAWTC	1 cut(s)	126
TscAI	CASTG	5 cut(s)	23, 29, 244, 501, 562
TseI	GCWGC	7 cut(s)	341, 406, 491, 659, 686, 733, 866
TspDTI	ATGAA	3 cut(s)	317, 579, 906
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	5 cut(s)	23, 29, 244, 501, 562
Tth111I	GACNNNGTC	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	3 cut(s)	643, 756, 905
XceI	RCATGY	1 cut(s)	785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	516, 744
ZraI	GACGTC	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.