Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Reverse (-)

11938661 .. 11944980

Gene Structure 6320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGGAAGTTGGTGCTGTAGTTTCGATGGACTATGGAAGAGCCAAACAGAGGTATTCTAAAAACGGGGATGAGAAGCTGAGTCCTGGTCTTCATCTTGCTTCTGCAGCAGAAGCTGGTGCTCTGGTTTCTTTGTGCACAAATCCTATTTGGCTTGTAAAAACAAGACTGCAGCTTCAGACTCCTCTCCATCAAACACGCCCATATTCTGGTTTTTATGATGCCTTGAGAACCATAATGAGAGAGGAAGGATTTGCTGCACTGTATAAGGGTCTTGGTCCTAGTCTTTTTCTGCAGGTCTCCCATGGTGCTATTCAATTTACTGCATATGAAGAACTCCGTAAAGTTATTGTTGACTTGAAGTCTAAACAAGGCACAAGTAATTCTGGAAGTTCGGATACTGTATTGGTATTTCTCTATCGATATACTTGTTGTTCTCAACGACCTAGTTCTGAGGGAATTCCAAGATATATGGATAGCTGGCATGTAATAAGGGAAACAGCACGGTTTGAGGGTGTTCGAGGCTTCTACAGGGGAATTACACCAAACCTTCTTAAAAATGTTCCTGCTGCTTCAATAACATTTATTGTATATGAAAATAAACATTATTTGAGGTTGAAAATGTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

210

Amino Acids

23.72

Weight (kDa)

9.49

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	26 - 118	4.5e-24	Mitochondrial carrier protein
Mito_carr	PF00153	156 - 200	3.3e-11	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	51, 209
AgsI	TTSAA	4 cut(s)	317, 361, 576, 619
AhdI	GACNNNNNGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	4 cut(s)	79, 116, 175, 480
AluI	AGCT	4 cut(s)	79, 116, 175, 480
Alw21I	GWGCWC	2 cut(s)	124, 140
Alw26I	GTCTC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	136
AlwNI	CAGNNNCTG	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	107, 172, 257, 569
ApoI	RAATTY	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	124, 140
BbvI	GCAGC	4 cut(s)	119, 184, 244, 556
BccI	CCATC	2 cut(s)	22, 198
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	282, 447
BfmI	CTRYAG	5 cut(s)	18, 105, 170, 293, 529
BfuAI	ACCTGC	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	391
BisI	GCNGC	4 cut(s)	108, 173, 258, 570
BlsI	GCNGC	4 cut(s)	109, 174, 259, 571
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	247
Bsa29I	ATCGAT	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 209
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	51, 209
BseMII	CTCAG	2 cut(s)	71, 444
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	119, 184, 244, 556
BsgI	GTGCAG	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	124, 140
BslI	CCNNNNNNNGG	2 cut(s)	51, 209
BsmAI	GTCTC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	124, 140
Bsp19I	CCATGG	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	72, 445
BspDI	ATCGAT	1 cut(s)	421
BspMAI	CTGCAG	3 cut(s)	109, 174, 297
BspMI	ACCTGC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	264, 403, 507
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	80, 453
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 113
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	5 cut(s)	18, 105, 170, 293, 529
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	4 cut(s)	119, 184, 244, 556
BstV2I	GAAGAC	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	482
CaiI	CAGNNNCTG	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	421
CviAII	CATG	2 cut(s)	305, 485
CviJI	RGCY	7 cut(s)	44, 79, 116, 154, 175, 480, 525
CviKI_1	RGCY	7 cut(s)	44, 79, 116, 154, 175, 480, 525
DdeI	CTNAG	2 cut(s)	80, 453
DriI	GACNNNNNGTC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	34
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	308, 488
FatI	CATG	2 cut(s)	304, 484
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	108, 173, 258, 570
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	108, 173, 258, 570
FspBI	CTAG	2 cut(s)	282, 447
GluI	GCNGC	4 cut(s)	108, 173, 258, 570
Hin1II	CATG	2 cut(s)	308, 488
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	82, 181
Hpy166II	GTNNAC	2 cut(s)	138, 355
Hpy188I	TCNGA	3 cut(s)	180, 397, 454
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	2 cut(s)	138, 355
HpyAV	CCTTC	2 cut(s)	242, 560
HpyCH4III	ACNGT	3 cut(s)	264, 403, 507
HpyCH4V	TGCA	6 cut(s)	107, 138, 172, 260, 295, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 113
HpyF3I	CTNAG	2 cut(s)	80, 453
Hsp92II	CATG	2 cut(s)	308, 488
LguI	GCTCTTC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	119, 184, 244, 556
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	282, 447
MboII	GAAGA	3 cut(s)	51, 83, 344
MhlI	GDGCHC	2 cut(s)	124, 140
MluCI	AATT	4 cut(s)	317, 382, 459, 537
MlyI	GAGTC	2 cut(s)	91, 175
MnlI	CCTC	7 cut(s)	45, 195, 238, 448, 505, 515, 606
MseI	TTAA	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	107, 113
NcoI	CCATGG	1 cut(s)	304
NdeI	CATATG	1 cut(s)	328
NlaIII	CATG	2 cut(s)	308, 488
NspI	RCATGY	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	109, 174, 259, 571
PleI	GAGTC	2 cut(s)	90, 175
PpsI	GAGTC	2 cut(s)	90, 175
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	3 cut(s)	109, 174, 297
PstNI	CAGNNNCTG	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	4 cut(s)	108, 173, 258, 570
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	91, 175
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	124, 140
SetI	ASST	9 cut(s)	56, 81, 118, 177, 300, 448, 482, 552, 617
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	5 cut(s)	18, 105, 170, 293, 529
SinI	GGWCC	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	4 cut(s)	317, 382, 459, 537
SspMI	CTAG	2 cut(s)	282, 447
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	3 cut(s)	264, 403, 507
TaqI	TCGA	3 cut(s)	26, 421, 520
TasI	AATT	4 cut(s)	317, 382, 459, 537
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	4 cut(s)	107, 172, 257, 569
TspDTI	ATGAA	4 cut(s)	17, 83, 345, 609
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	2 cut(s)	282, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.