Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8306621.1

Orthogroup ID

OG0007371

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 785

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8306621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtcgtcgtcgtcggagtcgccgcagtggcagtgggaaaacgccaccgccggcgccgtagccggcttcgcaaccgttgccgctatgcatcccctcgacgtcgtccgcaccaggtttcaagtcaacgacggtcgaatctccaatcttccgacttacaagaacacggcgaacgctatcttcaccattgctcgattggagggactgagaggactctatgcaggcttctctcctgctgtgattggctccactgtttcctggggtttatatttcttcttctatggaagagccaaacagaggtattctaaaaacggggatgagaagctgagtcctggtcttcatcttgcttctgcagcagaagctggtgctctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015230 GO:0015605 GO:0015711 GO:0015748 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0034220 GO:0035350 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

123

Amino Acids

13.23

Weight (kDa)

9.45

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66380
fragaria_vesca	FvH4_1g12470 FvH4_1g12470 FvH4_1g12470
malus_domestica	MD02G1138700.v1.1
prunus_persica	Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1 Prupe.7G162200_v2.0.a1
pyrus_communis	pycom02g10990
rosa_chinensis	RchiOBHm_Chr2g0100341
rosa_laevigata	RLG00000016967
rosa_multiflora	Rmu_co8306621.1_g000001 Rmu_sc0003340.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142310
rosa_rugosa	Rorug02G0087700 Rorug02G0087700 Rorug02G0087800 Rorug02G0087800 Rorug02G0087800
rosa_samantha	Rh2AG136900 Rh2CG142200 Rh2DG142300
rosa_wichuraiana	Rw2G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	4 cut(s)	23, 48, 81, 106
AcyI	GRCGYC	2 cut(s)	54, 99
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	3 cut(s)	110, 254, 328
AluBI	AGCT	2 cut(s)	322, 359
AluI	AGCT	2 cut(s)	322, 359
Alw21I	GWGCWC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	41, 180
BciT130I	CCWGG	3 cut(s)	112, 256, 330
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	3 cut(s)	23, 81, 351
BlsI	GCNGC	3 cut(s)	24, 82, 352
Bme1390I	CCNGG	3 cut(s)	112, 256, 330
BmiI	GGNNCC	2 cut(s)	55, 244
BmrFI	CCNGG	3 cut(s)	112, 256, 330
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	326
BsaHI	GRCGYC	2 cut(s)	54, 99
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	2 cut(s)	50, 62
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	112, 256, 330
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	88, 319
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	194, 314
BseXI	GCAGC	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	51, 63
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	367
BspACI	CCGC	4 cut(s)	23, 48, 81, 106
BspCNI	CTCAG	2 cut(s)	195, 315
BspLI	GGNNCC	2 cut(s)	55, 244
BspMAI	CTGCAG	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	50, 62
BssAI	RCCGGY	2 cut(s)	50, 62
BssECI	CCNNGG	1 cut(s)	255
BssNI	GRCGYC	2 cut(s)	54, 99
Bst2UI	CCWGG	3 cut(s)	112, 256, 330
Bst4CI	ACNGT	3 cut(s)	76, 131, 250
Bst6I	CTCTTC	1 cut(s)	277
BstACI	GRCGYC	2 cut(s)	54, 99
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	52, 64, 220
BstDEI	CTNAG	2 cut(s)	203, 323
BstF5I	GGATG	2 cut(s)	88, 319
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 68, 77, 350, 356
BstNI	CCWGG	3 cut(s)	112, 256, 330
BstSCI	CCNGG	3 cut(s)	110, 254, 328
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	88, 319
BtsI	GCAGTG	2 cut(s)	32, 38
BtsIMutI	CAGTG	3 cut(s)	32, 38, 246
Cac8I	GCNNGC	3 cut(s)	52, 64, 220
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	2 cut(s)	50, 62
CsiI	ACCWGGT	1 cut(s)	110
CviJI	RGCY	7 cut(s)	62, 66, 222, 243, 287, 322, 359
CviKI_1	RGCY	7 cut(s)	62, 66, 222, 243, 287, 322, 359
DdeI	CTNAG	2 cut(s)	203, 323
DinI	GGCGCC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	110, 254, 328
EcoT22I	ATGCAT	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
FaiI	YATR	4 cut(s)	86, 216, 265, 279
FaqI	GGGAC	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	23, 81, 351
FokI	GGATG	2 cut(s)	75, 326
Fsp4HI	GCNGC	3 cut(s)	23, 81, 351
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	23, 81, 351
HaeII	RGCGCY	1 cut(s)	57
HapII	CCGG	2 cut(s)	51, 63
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	2 cut(s)	54, 99
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	4 cut(s)	17, 135, 210, 325
HpaII	CCGG	2 cut(s)	51, 63
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	16, 150
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	6 cut(s)	10, 13, 16, 101, 104, 131
HpyCH4III	ACNGT	3 cut(s)	76, 131, 250
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	88, 218, 350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 68, 77, 350, 356
HpyF3I	CTNAG	2 cut(s)	203, 323
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	2 cut(s)	54, 99
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	2 cut(s)	50, 62
KroNI	GCCGGC	2 cut(s)	52, 64
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	110
MaeII	ACGT	1 cut(s)	99
MboII	GAAGA	6 cut(s)	137, 169, 262, 265, 294, 326
MhlI	GDGCHC	1 cut(s)	367
Mly113I	GGCGCC	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	26, 204, 334
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	104, 190, 200, 288
Mph1103I	ATGCAT	1 cut(s)	90
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	2 cut(s)	50, 62
MspI	CCGG	2 cut(s)	51, 63
MspR9I	CCNGG	3 cut(s)	112, 256, 330
MvaI	CCWGG	3 cut(s)	112, 256, 330
MwoI	GCNNNNNNNGC	5 cut(s)	28, 68, 77, 350, 356
NaeI	GCCGGC	2 cut(s)	52, 64
NarI	GGCGCC	1 cut(s)	54
NgoMIV	GCCGGC	2 cut(s)	50, 62
NlaIV	GGNNCC	2 cut(s)	55, 244
NsiI	ATGCAT	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	277
PdiI	GCCGGC	2 cut(s)	52, 64
PfeI	GAWTC	1 cut(s)	135
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	24, 82, 352
PleI	GAGTC	3 cut(s)	25, 204, 333
PluTI	GGCGCC	1 cut(s)	57
PpsI	GAGTC	3 cut(s)	25, 204, 333
Psp6I	CCWGG	3 cut(s)	110, 254, 328
PspGI	CCWGG	3 cut(s)	110, 254, 328
PspN4I	GGNNCC	2 cut(s)	55, 244
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	277
SatI	GCNGC	3 cut(s)	23, 81, 351
SchI	GAGTC	3 cut(s)	26, 204, 334
ScrFI	CCNGG	3 cut(s)	112, 256, 330
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	5 cut(s)	102, 116, 299, 324, 361
SexAI	ACCWGGT	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	50
SsiI	CCGC	4 cut(s)	23, 48, 81, 106
SspDI	GGCGCC	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	110, 254, 328
TaaI	ACNGT	3 cut(s)	76, 131, 250
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	96, 133, 190
TauI	GCSGC	2 cut(s)	25, 83
TfiI	GAWTC	1 cut(s)	135
TscAI	CASTG	3 cut(s)	32, 38, 253
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	3 cut(s)	32, 38, 253
Tth111I	GACNNNGTC	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.