FvH4_1g12750

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004522
Physical Location & Seq
Forward (+)
7026927 .. 7030368
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12750.t2

Sequence Viewer

Length: 1446 bp
ATGTTCATTCCATCAAAAGAAGATGTCCTAATTCTTGTTCAGAAGCACTATGAGACCTTCATTCTTGCAGTGCTTTCTATTGGAGTAACATTTTTGGTCTGTAAATTGGGTTGGAAAACGGTTGCAATCCGTGGCCGGTTGGGTTTACCCTTTATAGGTGAAACCTTTTCTTTTCTTTCAGCAACTAACAGCACAAAAGGATGCTACGAGTTTGTCAGACTCCGACGACAATGGTATGGGAAGTGGTTCAAGACAAGGATTTTTGGAAAGATCCATGTGTTTGTACCAAGCACAGACGGTGCAAAATTTATTTTTTCAAATGATTTTGCAAAGTTCAACAAAGGGTATGTGAAATCAATGGCAGATTGTGTTGGAAAGAACAGCTTGCTTTGTGTGCCACATGAAAAGCACAGAAGGATAAGGCGCCTTCTATCAGATCCTTTCTCCATGAACTCTTTATCTCAGTTTGTTCAGAAATTTGATAAAATGCTGTGCCAGAAGTTGAAGAAGCTAGAAGAAGGTGGGAAAAGCTTTGTGGTGCTTGAATTCAGTATGAAGATGACATTTGATGCAATGTGCAGCATGCTAGCAAGTGTCACTGAGGATTCCTTGTTACGGAAGATTGAGAAAGATTGCAATACTATTTCAGATGCAATGTTATCCATTCCTGTCATGATTCCAGGCACAAGATATTACAAAGGCATCAAGGCACGCAGACGTCTTATGACAACTTTCAAGAACATGATTGACAGAAGAAGAAACAGGAAGGAGTATCGAGAAGACTTCCTACAGTCCATGTTAGACAAAGATTCATACCCTCCCAACGAAAAGCTTCAAGACTCAGAAATTATGGACAACCTATTGACACTGATAATTGCAGGGCAGACAACCACTGCAGCTGCGATAATGTGGAGTGTCAAGTTTCTGGATGAGAACAAAGAAGCCCAAGACAGACTCAGAGAAGAACAGTTGTCTATATCAAAGTCTAAGCCAGCTAAATCTTCAGTTACACTTGAAGATATCAAAGATATGTCCTACTGTTTGAAGGTTGTAAAAGAGACACTGAGGATGGCCAATGTCCTTCTCTGGTTTCCTCGCATTGCACTCAGTGACTGCACTATACAGGGTTTTGAAATTAAGAAAGGATGGCATGCGAATATAGACGCGACTTGCATACACTACGATCCAGATTTGTATGCAGAACCTATGCAGTTCAACCCAGATAGATTTGATGAAATGCAAAAGCCATATAGCTTCATACCATTTGGATCAGGACCCAGAACATGCTTAGGAATCAACATGGCAAAGGTGACAATGTTGGTCTTTTTACACCGTCTAACTAGTGGTTACAGGTGGACAGTGGATGATCTGGATACCAGCTTAGAAAAGAAGGCACACATTCCTAGACTAAGAAGTGGATGTCCTATTACTTTGAAGGCCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

482

Amino Acids

55.45

Weight (kDa)

9.4

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 48 - 385 9.7e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 423
AccII CGCG 1 cut(s) 1166
AclWI GGATC 4 cut(s) 265, 431, 1178, 1276
AcoI YGGCCR 2 cut(s) 133, 1071
AcsI RAATTY 3 cut(s) 305, 476, 545
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 2 cut(s) 424, 718
AdeI CACNNNGTG 1 cut(s) 1109
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 155, 615
AhlI ACTAGT 1 cut(s) 1340
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 8 cut(s) 384, 511, 531, 832, 899, 995, 1254, 1380
AluI AGCT 8 cut(s) 384, 511, 531, 832, 899, 995, 1254, 1380
Alw26I GTCTC 2 cut(s) 47, 1052
AlwI GGATC 4 cut(s) 265, 431, 1178, 1276
AlwNI CAGNNNCTG 1 cut(s) 1113
AoxI GGCC 3 cut(s) 133, 1071, 1437
ApeKI GCWGC 3 cut(s) 579, 896, 899
ApoI RAATTY 3 cut(s) 305, 476, 545
Asp700I GAANNNNTTC 2 cut(s) 245, 831
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 1274
AsuHPI GGTGA 2 cut(s) 170, 1321
AsuNHI GCTAGC 1 cut(s) 586
AvaII GGWCC 1 cut(s) 1274
BalI TGGCCA 1 cut(s) 1073
BanI GGYRCC 1 cut(s) 423
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
BbsI GAAGAC 1 cut(s) 786
BbvI GCAGC 3 cut(s) 591, 886, 908
BccI CCATC 3 cut(s) 19, 1063, 1140
BciT130I CCWGG 1 cut(s) 681
BciVI GTATCC 1 cut(s) 1366
BcoDI GTCTC 2 cut(s) 47, 1052
BcuI ACTAGT 1 cut(s) 1340
BfaI CTAG 4 cut(s) 512, 587, 1341, 1404
BfmI CTRYAG 2 cut(s) 788, 894
BfoI RGCGCY 1 cut(s) 427
BfuI GTATCC 1 cut(s) 1366
BisI GCNGC 3 cut(s) 580, 897, 900
BlsI GCNGC 3 cut(s) 581, 898, 901
Bme1390I CCNGG 1 cut(s) 681
Bme18I GGWCC 1 cut(s) 1274
BmgT120I GGNCC 1 cut(s) 1274
BmiI GGNNCC 2 cut(s) 425, 1276
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 4 cut(s) 191, 559, 640, 711
BmtI GCTAGC 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 1288
BsaHI GRCGYC 2 cut(s) 424, 718
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 615
Bse118I RCCGGY 1 cut(s) 135
Bse3DI GCAATG 3 cut(s) 579, 660, 1098
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 6 cut(s) 206, 934, 1074, 1151, 1369, 1424
BseLI CCNNNNNNNGG 2 cut(s) 155, 615
BseMI GCAATG 3 cut(s) 579, 660, 1098
BseMII CTCAG 6 cut(s) 476, 591, 855, 970, 1055, 1120
BseXI GCAGC 3 cut(s) 591, 886, 908
BsgI GTGCAG 2 cut(s) 598, 1099
Bsh1236I CGCG 1 cut(s) 1166
BshFI GGCC 3 cut(s) 135, 1073, 1439
BshNI GGYRCC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 155, 615
BsmAI GTCTC 2 cut(s) 47, 1052
BsnI GGCC 3 cut(s) 135, 1073, 1439
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 5 cut(s) 270, 436, 1183, 1268, 1366
BspANI GGCC 3 cut(s) 135, 1073, 1439
BspCNI CTCAG 6 cut(s) 475, 592, 854, 969, 1056, 1119
BspFNI CGCG 1 cut(s) 1166
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 425, 1276
BspMAI CTGCAG 1 cut(s) 898
BspOI GCTAGC 1 cut(s) 590
BspPI GGATC 4 cut(s) 265, 431, 1178, 1276
BspT107I GGYRCC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 3 cut(s) 579, 660, 1098
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 5 cut(s) 270, 436, 1183, 1268, 1366
BssNI GRCGYC 2 cut(s) 424, 718
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 7 cut(s) 121, 299, 792, 969, 1040, 1334, 1360
BstACI GRCGYC 2 cut(s) 424, 718
BstC8I GCNNGC 6 cut(s) 386, 584, 588, 712, 993, 1152
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 6 cut(s) 206, 934, 1074, 1151, 1369, 1424
BstFNI CGCG 1 cut(s) 1166
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 5 cut(s) 273, 439, 1186, 1271, 1369
BstMAI GTCTC 2 cut(s) 47, 1052
BstMBI GATC 5 cut(s) 270, 436, 1183, 1268, 1366
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 3 cut(s) 586, 1154, 1287
BstSCI CCNGG 1 cut(s) 679
BstSFI CTRYAG 2 cut(s) 788, 894
BstUI CGCG 1 cut(s) 1166
BstV1I GCAGC 3 cut(s) 591, 886, 908
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 2 cut(s) 270, 436
BstYI RGATCY 2 cut(s) 270, 436
BsuI GTATCC 1 cut(s) 1366
BsuRI GGCC 3 cut(s) 135, 1073, 1439
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 6 cut(s) 206, 934, 1074, 1151, 1369, 1424
BtsI GCAGTG 2 cut(s) 75, 891
BtsIMutI CAGTG 7 cut(s) 75, 597, 866, 891, 1061, 1114, 1365
Cac8I GCNNGC 6 cut(s) 386, 584, 588, 712, 993, 1152
CaiI CAGNNNCTG 1 cut(s) 1113
CciI TCATGA 1 cut(s) 672
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 1274
CseI GACGC 1 cut(s) 1172
Csp6I GTAC 1 cut(s) 284
CviQI GTAC 1 cut(s) 284
DinI GGCGCC 1 cut(s) 425
DpnI GATC 5 cut(s) 272, 438, 1185, 1270, 1368
DpnII GATC 5 cut(s) 270, 436, 1183, 1268, 1366
DraIII CACNNNGTG 1 cut(s) 1109
EaeI YGGCCR 2 cut(s) 133, 1071
Eco147I AGGCCT 1 cut(s) 1439
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 1021
Eco47I GGWCC 1 cut(s) 1274
Eco57I CTGAAG 1 cut(s) 987
EcoO109I RGGNCCY 1 cut(s) 1274
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 679
EcoRV GATATC 1 cut(s) 1021
EgeI GGCGCC 1 cut(s) 425
EheI GGCGCC 1 cut(s) 425
FalI AAGNNNNNCTT 2 cut(s) 368, 400
Fnu4HI GCNGC 3 cut(s) 580, 897, 900
FokI GGATG 6 cut(s) 213, 941, 1081, 1158, 1376, 1431
Fsp4HI GCNGC 3 cut(s) 580, 897, 900
FspBI CTAG 4 cut(s) 512, 587, 1341, 1404
GlaI GCGC 1 cut(s) 425
GluI GCNGC 3 cut(s) 580, 897, 900
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 3 cut(s) 135, 1073, 1439
HapII CCGG 1 cut(s) 136
HgaI GACGC 1 cut(s) 1172
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 2 cut(s) 424, 718
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 2 cut(s) 529, 830
HinfI GANTC 7 cut(s) 219, 605, 676, 809, 839, 954, 1293
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 170, 1321
Hpy166II GTNNAC 2 cut(s) 146, 1356
Hpy188I TCNGA 8 cut(s) 42, 218, 224, 436, 474, 649, 844, 959
Hpy188III TCNNGA 9 cut(s) 250, 673, 736, 776, 836, 926, 1187, 1272, 1370
Hpy8I GTNNAC 2 cut(s) 146, 1356
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 9 cut(s) 67, 408, 437, 512, 760, 1039, 1091, 1384, 1429
HpyCH4III ACNGT 7 cut(s) 121, 299, 792, 969, 1040, 1334, 1360
HpyCH4IV ACGT 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpySE526I ACGT 1 cut(s) 718
Hsp92I GRCGYC 2 cut(s) 424, 718
HspAI GCGC 1 cut(s) 424
KasI GGCGCC 1 cut(s) 423
Kzo9I GATC 5 cut(s) 270, 436, 1183, 1268, 1366
Lsp1109I GCAGC 3 cut(s) 591, 886, 908
LweI GCATC 4 cut(s) 191, 559, 640, 711
MaeI CTAG 4 cut(s) 512, 587, 1341, 1404
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 7 cut(s) 85, 595, 612, 1006, 1109, 1309, 1346
MalI GATC 5 cut(s) 272, 438, 1185, 1270, 1368
MboI GATC 5 cut(s) 270, 436, 1183, 1268, 1366
MflI RGATCY 2 cut(s) 270, 436
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 8 cut(s) 30, 104, 305, 476, 545, 846, 873, 1134
MluNI TGGCCA 1 cut(s) 1073
Mly113I GGCGCC 1 cut(s) 424
MlyI GAGTC 3 cut(s) 213, 833, 948
MmeI TCCRAC 3 cut(s) 92, 247, 352
MnlI CCTC 4 cut(s) 595, 828, 1059, 1104
Mox20I TGGCCA 1 cut(s) 1073
MroXI GAANNNNTTC 2 cut(s) 245, 831
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 1 cut(s) 1137
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 681
MvaI CCWGG 1 cut(s) 681
MvnI CGCG 1 cut(s) 1166
MwoI GCNNNNNNNGC 1 cut(s) 394
NarI GGCGCC 1 cut(s) 424
NdeII GATC 5 cut(s) 270, 436, 1183, 1268, 1366
NheI GCTAGC 1 cut(s) 586
NlaIV GGNNCC 2 cut(s) 425, 1276
NmuCI GTSAC 3 cut(s) 595, 1109, 1309
NspI RCATGY 3 cut(s) 586, 1154, 1287
PaeI GCATGC 2 cut(s) 586, 1154
PagI TCATGA 1 cut(s) 672
PceI AGGCCT 1 cut(s) 1439
PdmI GAANNNNTTC 2 cut(s) 245, 831
PfeI GAWTC 4 cut(s) 605, 676, 809, 1293
PkrI GCNGC 3 cut(s) 581, 898, 901
PleI GAGTC 3 cut(s) 213, 833, 948
PluTI GGCGCC 1 cut(s) 427
PpsI GAGTC 3 cut(s) 213, 833, 948
PpuMI RGGWCCY 1 cut(s) 1274
Psp5II RGGWCCY 1 cut(s) 1274
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 2 cut(s) 425, 1276
PspPI GGNCC 1 cut(s) 1274
PspPPI RGGWCCY 1 cut(s) 1274
PstI CTGCAG 1 cut(s) 898
PstNI CAGNNNCTG 1 cut(s) 1113
PsuI RGATCY 2 cut(s) 270, 436
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 1137
SatI GCNGC 3 cut(s) 580, 897, 900
Sau3AI GATC 5 cut(s) 270, 436, 1183, 1268, 1366
Sau96I GGNCC 1 cut(s) 1274
SchI GAGTC 3 cut(s) 213, 833, 948
ScrFI CCNGG 1 cut(s) 681
SfaNI GCATC 4 cut(s) 191, 559, 640, 711
SfcI CTRYAG 2 cut(s) 788, 894
SfoI GGCGCC 1 cut(s) 425
SinI GGWCC 1 cut(s) 1274
SpeI ACTAGT 1 cut(s) 1340
SphI GCATGC 2 cut(s) 586, 1154
Sse9I AATT 8 cut(s) 30, 104, 305, 476, 545, 846, 873, 1134
SseBI AGGCCT 1 cut(s) 1439
SspDI GGCGCC 1 cut(s) 423
SspMI CTAG 4 cut(s) 512, 587, 1341, 1404
StuI AGGCCT 1 cut(s) 1439
StyD4I CCNGG 1 cut(s) 679
TaaI ACNGT 7 cut(s) 121, 299, 792, 969, 1040, 1334, 1360
TaiI ACGT 1 cut(s) 721
TaqI TCGA 1 cut(s) 775
TasI AATT 8 cut(s) 30, 104, 305, 476, 545, 846, 873, 1134
TfiI GAWTC 4 cut(s) 605, 676, 809, 1293
Tru1I TTAA 1 cut(s) 1137
Tru9I TTAA 1 cut(s) 1137
TscAI CASTG 7 cut(s) 75, 604, 873, 898, 1068, 1114, 1365
TseFI GTSAC 3 cut(s) 595, 1109, 1309
TseI GCWGC 3 cut(s) 579, 896, 899
Tsp45I GTSAC 3 cut(s) 595, 1109, 1309
TspDTI ATGAA 7 cut(s) 49, 417, 464, 569, 801, 1246, 1248
TspGWI ACGGA 2 cut(s) 119, 631
TspRI CASTG 7 cut(s) 75, 604, 873, 898, 1068, 1114, 1365
VpaK11BI GGWCC 1 cut(s) 1274
XapI RAATTY 3 cut(s) 305, 476, 545
XceI RCATGY 3 cut(s) 586, 1154, 1287
XmnI GAANNNNTTC 2 cut(s) 245, 831
XspI CTAG 4 cut(s) 512, 587, 1341, 1404
ZraI GACGTC 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.