Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001659.1

Orthogroup ID

OG0004522

Physical Location & Seq

Genomic Coordinates Forward (+)

116545 .. 119084

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001659.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgttcattccatcaaaagaagttctcctatttcttgctcagaagcactatgagaccttcattcttgcagtgctttccattggagtaatatttttggttccaaaatttggttggaaaacggttgcaattagctacagaggtcatatccgtggccggttgggtttaccctttataggtgaaaccttttcttttctttcagcaactaacagcacaaaaggatgctacgagtttgtcagactccgacgacaatggtacgggaagtggttcaagacaaggattttcggaaagatccatgtatttgtgccaagcgcagagggtgcaaaaatgattttttcaaatgattttgtaaagttcaacaaaggctatgtgaaatcaatggcagattgtgtaggaaagaacagcttgctctgtgtaccacatgaaaaccacagaaggataaggcgccttctatcagatcctttctccatgaactctttatctcaatttgttcagaaatttgataaaatgctgtgccagaagttgaagaacctagaagaaggaggaaaaagctttgtggtgcttgaatttggtatgaagatgacatttgatgcaatgtgtagcatgctaatgagtgtcactgaggattcattgttacggaagattgagaaagattgcactactatttcagatgcaatgttatcccttccagtcatgattccaggcaccagatattacaaaggcatcaaggcacgcggacgtcttatggaaacctttaaggacatgattgacagaagaagaagcgggaaggagtctccagaagacttcctacagtccacattagacagagattcataccctcccaatgaaaagcttcaagactcggagattatagacaacctattgacactgataattgcagggcagacaaccactgcagctgcgataatgtggagtgtcaagtttctggacgagaacaaagaagcccaagacagactcagagtaagtaacaaagggaaaattgctaaagacaccatattttctgaccacattatccgatcaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

347

Amino Acids

39.78

Weight (kDa)

9.55

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12750 FvH4_1g12750 FvH4_6g26890
malus_domestica	MD15G1255700.v1.1
prunus_persica	Prupe.7G158700_v2.0.a1 Prupe.7G158700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100851 RchiOBHm_Chr2g0128621 RchiOBHm_Chr7g0201921
rosa_laevigata	RLG00000003640 RLG00000017018 RLG00000019013
rosa_multiflora	Rmu_sc0000837.1_g000081 Rmu_sc0001659.1_g000026 Rmu_sc0006976.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141800
rosa_rugosa	Rorug02G0093300 Rorug02G0279400
rosa_samantha	Rh2AG140700 Rh2AG332800 Rh2BG145800 Rh2BG340700 Rh2CG147000 Rh2CG319500 Rh2DG146400 Rh2DG357200 Rh7CG205200 Rh7DG200200
rosa_wichuraiana	Rw2G011030 Rw2G026870 Rw2G027130 Rw7G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	739
AccB1I	GGYRCC	2 cut(s)	441, 701
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccII	CGCG	1 cut(s)	732
AciI	CCGC	2 cut(s)	732, 780
AclWI	GGATC	2 cut(s)	283, 449
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	3 cut(s)	104, 494, 563
AcyI	GRCGYC	2 cut(s)	442, 736
AfaI	GTAC	2 cut(s)	254, 414
AfiI	CCNNNNNNNGG	2 cut(s)	107, 173
AgsI	TTSAA	6 cut(s)	268, 336, 355, 523, 563, 854
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	5 cut(s)	132, 402, 549, 850, 917
AluI	AGCT	5 cut(s)	132, 402, 549, 850, 917
Alw26I	GTCTC	2 cut(s)	47, 795
AlwI	GGATC	2 cut(s)	283, 449
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	914, 917
ApoI	RAATTY	3 cut(s)	104, 494, 563
Asp700I	GAANNNNTTC	2 cut(s)	263, 849
AspLEI	GCGC	2 cut(s)	311, 444
AsuHPI	GGTGA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	441, 701
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	904, 926
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	47, 795
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	3 cut(s)	133, 806, 912
BfoI	RGCGCY	1 cut(s)	445
BisI	GCNGC	2 cut(s)	915, 918
BlsI	GCNGC	2 cut(s)	916, 919
Bme1390I	CCNGG	1 cut(s)	699
BmiI	GGNNCC	3 cut(s)	99, 443, 703
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	4 cut(s)	209, 577, 658, 729
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	777
BsaHI	GRCGYC	2 cut(s)	442, 736
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 173
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	2 cut(s)	597, 678
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	107, 173
BseMI	GCAATG	2 cut(s)	597, 678
BseMII	CTCAG	3 cut(s)	53, 609, 988
BseNI	ACTGG	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	904, 926
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	2 cut(s)	441, 701
BsiSI	CCGG	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	107, 173
BsmAI	GTCTC	2 cut(s)	47, 795
BsnI	GGCC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	288, 454, 1034
BspACI	CCGC	2 cut(s)	732, 780
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	3 cut(s)	52, 610, 987
BspFNI	CGCG	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	99, 443, 703
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	2 cut(s)	283, 449
BspT107I	GGYRCC	2 cut(s)	441, 701
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	597, 678
BsrFI	RCCGGY	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	288, 454, 1034
BssNI	GRCGYC	2 cut(s)	442, 736
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	121, 810
BstACI	GRCGYC	2 cut(s)	442, 736
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	404, 602, 730
BstDEI	CTNAG	3 cut(s)	39, 618, 974
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	732
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	2 cut(s)	311, 444
BstKTI	GATC	3 cut(s)	291, 457, 1037
BstMAI	GTCTC	2 cut(s)	47, 795
BstMBI	GATC	3 cut(s)	288, 454, 1034
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	3 cut(s)	133, 806, 912
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	2 cut(s)	904, 926
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	288, 454
BstYI	RGATCY	2 cut(s)	288, 454
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	224
BtsI	GCAGTG	2 cut(s)	75, 909
BtsIMutI	CAGTG	4 cut(s)	75, 615, 884, 909
Cac8I	GCNNGC	3 cut(s)	404, 602, 730
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	2 cut(s)	311, 444
Cfr10I	RCCGGY	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	253, 413
CviAII	CATG	6 cut(s)	293, 419, 466, 601, 691, 760
CviJI	RGCY	8 cut(s)	132, 153, 363, 402, 549, 850, 917, 962
CviKI_1	RGCY	8 cut(s)	132, 153, 363, 402, 549, 850, 917, 962
CviQI	GTAC	2 cut(s)	253, 413
DdeI	CTNAG	3 cut(s)	39, 618, 974
DinI	GGCGCC	1 cut(s)	443
DpnI	GATC	3 cut(s)	290, 456, 1036
DpnII	GATC	3 cut(s)	288, 454, 1034
EaeI	YGGCCR	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	697
EgeI	GGCGCC	1 cut(s)	443
EheI	GGCGCC	1 cut(s)	443
FaeI	CATG	6 cut(s)	296, 422, 469, 604, 694, 763
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	6 cut(s)	292, 418, 465, 600, 690, 759
FauI	CCCGC	1 cut(s)	773
Fnu4HI	GCNGC	2 cut(s)	915, 918
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	915, 918
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	2 cut(s)	310, 443
GluI	GCNGC	2 cut(s)	915, 918
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	2 cut(s)	311, 444
Hin1I	GRCGYC	2 cut(s)	442, 736
Hin1II	CATG	6 cut(s)	296, 422, 469, 604, 694, 763
Hin6I	GCGC	2 cut(s)	309, 442
HinP1I	GCGC	2 cut(s)	309, 442
HindIII	AAGCTT	2 cut(s)	547, 848
HinfI	GANTC	7 cut(s)	237, 623, 694, 788, 827, 857, 972
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	164, 413, 813
Hpy188III	TCNNGA	5 cut(s)	268, 691, 794, 854, 944
Hpy8I	GTNNAC	3 cut(s)	164, 413, 813
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	6 cut(s)	67, 426, 455, 530, 692, 778
HpyCH4III	ACNGT	2 cut(s)	121, 810
HpyCH4IV	ACGT	2 cut(s)	736, 1040
HpyCH4V	TGCA	8 cut(s)	68, 125, 320, 590, 654, 671, 896, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	3 cut(s)	39, 618, 974
HpySE526I	ACGT	2 cut(s)	736, 1040
Hsp92I	GRCGYC	2 cut(s)	442, 736
Hsp92II	CATG	6 cut(s)	296, 422, 469, 604, 694, 763
HspAI	GCGC	2 cut(s)	309, 442
KasI	GGCGCC	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	288, 454, 1034
LpnPI	CCDG	9 cut(s)	167, 527, 684, 699, 711, 718, 807, 882, 929
Lsp1109I	GCAGC	2 cut(s)	904, 926
LweI	GCATC	4 cut(s)	209, 577, 658, 729
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	736, 1040
MaeIII	GTNAC	3 cut(s)	613, 630, 983
MalI	GATC	3 cut(s)	290, 456, 1036
MboI	GATC	3 cut(s)	288, 454, 1034
MboII	GAAGA	7 cut(s)	535, 545, 586, 649, 783, 786, 809
MflI	RGATCY	2 cut(s)	288, 454
MluCI	AATT	7 cut(s)	104, 126, 482, 494, 563, 891, 996
Mly113I	GGCGCC	1 cut(s)	442
MlyI	GAGTC	4 cut(s)	231, 797, 851, 966
MmeI	TCCRAC	2 cut(s)	92, 265
MnlI	CCTC	5 cut(s)	131, 307, 533, 613, 846
MroXI	GAANNNNTTC	2 cut(s)	263, 849
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	2 cut(s)	147, 605
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	1 cut(s)	317
NarI	GGCGCC	1 cut(s)	442
NdeII	GATC	3 cut(s)	288, 454, 1034
NlaIII	CATG	6 cut(s)	296, 422, 469, 604, 694, 763
NlaIV	GGNNCC	3 cut(s)	99, 443, 703
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	604
PaeI	GCATGC	1 cut(s)	604
PagI	TCATGA	1 cut(s)	690
PdmI	GAANNNNTTC	2 cut(s)	263, 849
PfeI	GAWTC	3 cut(s)	623, 694, 827
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	916, 919
PleI	GAGTC	4 cut(s)	231, 796, 851, 966
PluTI	GGCGCC	1 cut(s)	445
PpsI	GAGTC	4 cut(s)	231, 796, 851, 966
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	3 cut(s)	99, 443, 703
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	2 cut(s)	288, 454
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	2 cut(s)	254, 414
RsaNI	GTAC	2 cut(s)	253, 413
RseI	CAYNNNNRTG	2 cut(s)	147, 605
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	2 cut(s)	915, 918
Sau3AI	GATC	3 cut(s)	288, 454, 1034
SchI	GAGTC	4 cut(s)	231, 797, 851, 966
ScrFI	CCNGG	1 cut(s)	699
SfaNI	GCATC	4 cut(s)	209, 577, 658, 729
SfcI	CTRYAG	3 cut(s)	133, 806, 912
SfoI	GGCGCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	147, 605
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	7 cut(s)	104, 126, 482, 494, 563, 891, 996
SsiI	CCGC	2 cut(s)	732, 780
SspDI	GGCGCC	1 cut(s)	441
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	121, 810
TaiI	ACGT	2 cut(s)	739, 1043
TasI	AATT	7 cut(s)	104, 126, 482, 494, 563, 891, 996
TfiI	GAWTC	3 cut(s)	623, 694, 827
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	4 cut(s)	75, 622, 891, 916
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	914, 917
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	7 cut(s)	49, 435, 482, 587, 615, 819, 858
TspGWI	ACGGA	2 cut(s)	137, 649
TspRI	CASTG	4 cut(s)	75, 622, 891, 916
Van91I	CCANNNNNTGG	1 cut(s)	107
XapI	RAATTY	3 cut(s)	104, 494, 563
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmnI	GAANNNNTTC	2 cut(s)	263, 849
XspI	CTAG	1 cut(s)	530
ZraI	GACGTC	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.