FvH4_6g26890

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004522
Physical Location & Seq
Reverse (-)
20566556 .. 20570667
4112 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26890.t1

Sequence Viewer

Length: 1476 bp
ATGTTGTGTGCCATATCAAAAGAAGAGTTCCTCTTCCTTGTTAAGAAGCATTATGATGTTCTCATAGTTGCGCTACTGTTTTCTATCGGAGTTGCATTTTTCGTATCCAAATTAGCATGGAGAAAGGCCACAGCAAGTTCCAGAGGTTACATCCCTGGCCGACTGGGGTTACCCTTTATAGGTGAAACCGTTCCTTTTTTGTCAGCAGTCAAGAGCACAGGAGGATGCTATGAGTTTATCAGACTACGGCGAATAAGGTACGGGAAGTGGTTCAAGACGAGAGTTTTTGGCAAGATCCATGTGTTTGTTCCAAGTACAGACGGTGCAAGAATGATTCTTTCTAATGATTTCGTCAAGTTCAACAAAGGGTATATGAAAGCATTGCTAGATTGTATAGGAGATAAAAGCTTGTTCACTGTATCACATGAGAACCATAAAAGGATAAGGGACTTGTTATCAGATCTTTTCTCCATGAACTCTTTATCTTCATTCATCGAGAAATTTGATAAAATGCTTTGTCAGAGACTAAAGAAATTAGAACAAGGTGGGAAAAGCTTTTCTGTGTTTGACTTCAGTATGAAGATGGCATTTGATTCGATGTGCTGCATGCTAATGAGCATCACGGATGAGGCCTTGCTACGGCAACTTGAGAAAGACATCACTGCAGTGTCAAATGCAATCTTTTCTGCTCCTATCATGATTCCAGGCACTAAATATTACAAAGGCATCAAGGCTCGCAGACGTATAATGGAAATCTTCAAAGACATGATTGCAAGACGGCGAAGTGGGGAAGAGTGGCCAGAACCTGAAGATTTCCTACAGTCATTGTTACGAAGAGACTCATACCATCCCGATGAAAAGCTCCAAGACCCGGAAATCATGGACAACTTGATGACCCTTTTAATTTCAGGGCAGGCCACCACTTCAGCTACACAGATGTGGAGTGTCAAGTTTCTGGATGAAAACCAACAAGTCCAAGATATTCTCAGGAAGGAAGTTTTGTCAATAGCTAGATCCAAGCCCGAAGGAGCATCAGTCACCCTCGAAGATATTAATAGAATGCCCTACTGTTGGAAGGTTCTTAAAGAAACAATGAGGATATCAAGTGTGGTTATGTGGTATCCTCGCGTTGCACTCGCTGACTGTACTATAGAAGGTTTTGAAATAAAGAAAGGGTGGCATGTGAACGTTGATGCGAAATGCATACACAACGACCCAGAATTGTACCCAGACCCTTCCAAATTCAACCCTTCTAGATTTGATGAACTGCTGAAACCTTACAGTTTCATACCATTTGCGTCAGGACCCAGGACATGCTTGGGAATCAATATGGCCAAGATGACAATGATGGTCTTTCTTTACCGTCTCACTTCTGCTTACAGCTGGACAGTCGATGATCTTGATACCAGTCTCCAAGAGAATGCACATTTTCCTAGACTGAGGAGTGGTTGTCCCATTACCTTGAATCCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

492

Amino Acids

56.41

Weight (kDa)

9.11

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 57 - 469 1.8e-66 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1474
AccII CGCG 1 cut(s) 1128
AclI AACGTT 1 cut(s) 1188
AclWI GGATC 2 cut(s) 289, 1008
AcoI YGGCCR 3 cut(s) 157, 797, 1332
AcsI RAATTY 2 cut(s) 500, 1241
AcuI CTGAAG 3 cut(s) 556, 828, 909
AfaI GTAC 4 cut(s) 260, 316, 1147, 1226
AfiI CCNNNNNNNGG 4 cut(s) 179, 639, 871, 1071
AgsI TTSAA 6 cut(s) 274, 361, 760, 1163, 1246, 1465
AjnI CCWGG 3 cut(s) 154, 703, 1307
AleI CACNNNNGTG 2 cut(s) 665, 937
AluBI AGCT 6 cut(s) 408, 555, 862, 929, 1010, 1383
AluI AGCT 6 cut(s) 408, 555, 862, 929, 1010, 1383
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 4 cut(s) 517, 831, 1370, 1415
AlwI GGATC 2 cut(s) 289, 1008
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 6 cut(s) 126, 157, 630, 797, 915, 1332
ApeKI GCWGC 1 cut(s) 603
ApoI RAATTY 2 cut(s) 500, 1241
AseI ATTAAT 1 cut(s) 1053
Asp700I GAANNNNTTC 2 cut(s) 189, 269
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 1304
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 2 cut(s) 194, 1030
AvaII GGWCC 1 cut(s) 1304
BalI TGGCCA 2 cut(s) 799, 1334
BarI GAAGNNNNNNTAC 2 cut(s) 801, 833
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 590
BccI CCATC 3 cut(s) 577, 855, 1342
BceAI ACGGC 3 cut(s) 263, 656, 794
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciT130I CCWGG 3 cut(s) 156, 705, 1309
BciVI GTATCC 2 cut(s) 115, 1131
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 4 cut(s) 517, 831, 1370, 1415
BfaI CTAG 4 cut(s) 386, 1011, 1254, 1434
BfmI CTRYAG 3 cut(s) 663, 818, 1149
BfuI GTATCC 2 cut(s) 115, 1131
BglII AGATCT 1 cut(s) 460
BisI GCNGC 1 cut(s) 604
BlsI GCNGC 1 cut(s) 605
Bme1390I CCNGG 4 cut(s) 156, 705, 872, 1309
Bme18I GGWCC 1 cut(s) 1304
BmgT120I GGNCC 1 cut(s) 1304
BmiI GGNNCC 1 cut(s) 1306
BmrFI CCNGG 4 cut(s) 156, 705, 872, 1309
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 5 cut(s) 215, 627, 735, 1040, 1183
BmuI ACTGGG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 154, 1307
BsaXI ACNNNNNCTCC 4 cut(s) 1020, 1050, 1435, 1465
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 639, 871, 1071
Bse1I ACTGG 2 cut(s) 168, 1407
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 3 cut(s) 156, 705, 1309
BseDI CCNNGG 2 cut(s) 154, 1307
BseGI GGATG 5 cut(s) 150, 230, 631, 847, 964
BseLI CCNNNNNNNGG 4 cut(s) 179, 639, 871, 1071
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 1000, 1430
BseNI ACTGG 2 cut(s) 168, 1407
BseRI GAGGAG 1 cut(s) 1456
BseXI GCAGC 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 1128
BshFI GGCC 6 cut(s) 128, 159, 632, 799, 917, 1334
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 872
BslFI GGGAC 2 cut(s) 461, 1437
BslI CCNNNNNNNGG 4 cut(s) 179, 639, 871, 1071
BsmAI GTCTC 4 cut(s) 517, 831, 1370, 1415
BsmBI CGTCTC 1 cut(s) 1370
BsmFI GGGAC 2 cut(s) 461, 1437
BsmI GAATGC 2 cut(s) 1065, 1426
BsnI GGCC 6 cut(s) 128, 159, 632, 799, 917, 1334
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 4 cut(s) 294, 460, 1013, 1396
BspANI GGCC 6 cut(s) 128, 159, 632, 799, 917, 1334
BspCNI CTCAG 2 cut(s) 999, 1431
BspFNI CGCG 1 cut(s) 1128
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 1306
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 2 cut(s) 289, 1008
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 2 cut(s) 168, 1407
BssECI CCNNGG 2 cut(s) 154, 1307
BssMI GATC 4 cut(s) 294, 460, 1013, 1396
Bst2UI CCWGG 3 cut(s) 156, 705, 1309
Bst6I CTCTTC 4 cut(s) 18, 38, 786, 829
BstC8I GCNNGC 3 cut(s) 608, 736, 915
BstDEI CTNAG 2 cut(s) 986, 1439
BstEII GGTNACC 1 cut(s) 168
BstF5I GGATG 5 cut(s) 150, 230, 631, 847, 964
BstFNI CGCG 1 cut(s) 1128
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 297, 463, 1016, 1399
BstMAI GTCTC 4 cut(s) 517, 831, 1370, 1415
BstMBI GATC 4 cut(s) 294, 460, 1013, 1396
BstNI CCWGG 3 cut(s) 156, 705, 1309
BstNSI RCATGY 3 cut(s) 610, 1184, 1317
BstPI GGTNACC 1 cut(s) 168
BstSCI CCNGG 4 cut(s) 154, 703, 870, 1307
BstSFI CTRYAG 3 cut(s) 663, 818, 1149
BstUI CGCG 1 cut(s) 1128
BstV1I GCAGC 1 cut(s) 590
BstX2I RGATCY 3 cut(s) 294, 460, 1013
BstYI RGATCY 3 cut(s) 294, 460, 1013
BsuI GTATCC 2 cut(s) 115, 1131
BsuRI GGCC 6 cut(s) 128, 159, 632, 799, 917, 1334
BtsCI GGATG 5 cut(s) 150, 230, 631, 847, 964
BtsI GCAGTG 2 cut(s) 660, 672
BtsIMutI CAGTG 3 cut(s) 414, 660, 672
Cac8I GCNNGC 3 cut(s) 608, 736, 915
CaiI CAGNNNCTG 1 cut(s) 806
CciI TCATGA 1 cut(s) 696
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 1304
CseI GACGC 1 cut(s) 1287
Csp6I GTAC 4 cut(s) 259, 315, 1146, 1225
CviQI GTAC 4 cut(s) 259, 315, 1146, 1225
DdeI CTNAG 2 cut(s) 986, 1439
DpnI GATC 4 cut(s) 296, 462, 1015, 1398
DpnII GATC 4 cut(s) 294, 460, 1013, 1396
EaeI YGGCCR 3 cut(s) 157, 797, 1332
Eam1104I CTCTTC 4 cut(s) 18, 38, 786, 829
EarI CTCTTC 4 cut(s) 18, 38, 786, 829
Eco147I AGGCCT 1 cut(s) 632
Eco32I GATATC 1 cut(s) 1101
Eco47I GGWCC 1 cut(s) 1304
Eco57I CTGAAG 3 cut(s) 556, 828, 909
Eco91I GGTNACC 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 1304
EcoO65I GGTNACC 1 cut(s) 168
EcoRII CCWGG 3 cut(s) 154, 703, 1307
EcoRV GATATC 1 cut(s) 1101
EcoT22I ATGCAT 1 cut(s) 1205
Esp3I CGTCTC 1 cut(s) 1370
FaqI GGGAC 2 cut(s) 461, 1437
Fnu4HI GCNGC 1 cut(s) 604
FokI GGATG 5 cut(s) 137, 237, 638, 834, 971
Fsp4HI GCNGC 1 cut(s) 604
FspBI CTAG 4 cut(s) 386, 1011, 1254, 1434
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 604
HaeIII GGCC 6 cut(s) 128, 159, 632, 799, 917, 1334
HapII CCGG 1 cut(s) 872
HgaI GACGC 1 cut(s) 1287
HhaI GCGC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 406, 553
HinfI GANTC 6 cut(s) 334, 593, 700, 839, 1323, 1465
HpaII CCGG 1 cut(s) 872
HphI GGTGA 2 cut(s) 194, 1030
Hpy166II GTNNAC 2 cut(s) 414, 1186
Hpy188I TCNGA 4 cut(s) 89, 242, 460, 522
Hpy8I GTNNAC 2 cut(s) 414, 1186
HpyAV CCTTC 6 cut(s) 985, 1019, 1069, 1148, 1245, 1260
HpyCH4IV ACGT 2 cut(s) 742, 1188
HpyCH4V TGCA 9 cut(s) 95, 326, 606, 665, 677, 773, 1133, 1203, 1424
HpyF3I CTNAG 2 cut(s) 986, 1439
HpySE526I ACGT 2 cut(s) 742, 1188
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 4 cut(s) 294, 460, 1013, 1396
LmnI GCTCC 3 cut(s) 694, 867, 1028
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 5 cut(s) 215, 627, 735, 1040, 1183
MaeI CTAG 4 cut(s) 386, 1011, 1254, 1434
MaeII ACGT 2 cut(s) 742, 1188
MaeIII GTNAC 4 cut(s) 146, 168, 828, 1036
MalI GATC 4 cut(s) 296, 462, 1015, 1398
MboI GATC 4 cut(s) 294, 460, 1013, 1396
MboII GAAGA 9 cut(s) 25, 35, 477, 592, 748, 803, 821, 846, 1058
MflI RGATCY 3 cut(s) 294, 460, 1013
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 2 cut(s) 799, 1334
MluCI AATT 6 cut(s) 110, 500, 533, 903, 1220, 1241
MluNI TGGCCA 2 cut(s) 799, 1334
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 1 cut(s) 1052
MnlI CCTC 8 cut(s) 41, 137, 215, 622, 1052, 1089, 1134, 1434
Mox20I TGGCCA 2 cut(s) 799, 1334
Mph1103I ATGCAT 1 cut(s) 1205
MroXI GAANNNNTTC 2 cut(s) 189, 269
MscI TGGCCA 2 cut(s) 799, 1334
MseI TTAA 4 cut(s) 42, 902, 1053, 1083
MslI CAYNNNNRTG 5 cut(s) 54, 611, 665, 852, 937
Msp20I TGGCCA 2 cut(s) 799, 1334
MspA1I CMGCKG 1 cut(s) 1383
MspI CCGG 1 cut(s) 872
MspR9I CCNGG 4 cut(s) 156, 705, 872, 1309
Mva1269I GAATGC 2 cut(s) 1065, 1426
MvaI CCWGG 3 cut(s) 156, 705, 1309
MvnI CGCG 1 cut(s) 1128
NciI CCSGG 1 cut(s) 872
NdeII GATC 4 cut(s) 294, 460, 1013, 1396
NlaIV GGNNCC 1 cut(s) 1306
NmuCI GTSAC 1 cut(s) 1036
NsiI ATGCAT 1 cut(s) 1205
NspI RCATGY 3 cut(s) 610, 1184, 1317
OliI CACNNNNGTG 2 cut(s) 665, 937
PaeI GCATGC 1 cut(s) 610
PagI TCATGA 1 cut(s) 696
PceI AGGCCT 1 cut(s) 632
PctI GAATGC 2 cut(s) 1065, 1426
PdmI GAANNNNTTC 2 cut(s) 189, 269
PfeI GAWTC 5 cut(s) 334, 593, 700, 1323, 1465
PkrI GCNGC 1 cut(s) 605
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
PpuMI RGGWCCY 1 cut(s) 1304
PshBI ATTAAT 1 cut(s) 1053
PsiI TTATAA 1 cut(s) 1474
Psp1406I AACGTT 1 cut(s) 1188
Psp5II RGGWCCY 1 cut(s) 1304
Psp6I CCWGG 3 cut(s) 154, 703, 1307
PspEI GGTNACC 1 cut(s) 168
PspGI CCWGG 3 cut(s) 154, 703, 1307
PspN4I GGNNCC 1 cut(s) 1306
PspPI GGNCC 1 cut(s) 1304
PspPPI RGGWCCY 1 cut(s) 1304
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 806
PsuI RGATCY 3 cut(s) 294, 460, 1013
PvuII CAGCTG 1 cut(s) 1383
RsaI GTAC 4 cut(s) 260, 316, 1147, 1226
RsaNI GTAC 4 cut(s) 259, 315, 1146, 1225
RseI CAYNNNNRTG 5 cut(s) 54, 611, 665, 852, 937
SaqAI TTAA 4 cut(s) 42, 902, 1053, 1083
SatI GCNGC 1 cut(s) 604
Sau3AI GATC 4 cut(s) 294, 460, 1013, 1396
Sau96I GGNCC 1 cut(s) 1304
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 4 cut(s) 156, 705, 872, 1309
SduI GDGCHC 1 cut(s) 218
SfaNI GCATC 5 cut(s) 215, 627, 735, 1040, 1183
SfcI CTRYAG 3 cut(s) 663, 818, 1149
SinI GGWCC 1 cut(s) 1304
SmiMI CAYNNNNRTG 5 cut(s) 54, 611, 665, 852, 937
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SphI GCATGC 1 cut(s) 610
Sse9I AATT 6 cut(s) 110, 500, 533, 903, 1220, 1241
SseBI AGGCCT 1 cut(s) 632
SspI AATATT 1 cut(s) 716
SspMI CTAG 4 cut(s) 386, 1011, 1254, 1434
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 4 cut(s) 154, 703, 870, 1307
TaiI ACGT 2 cut(s) 745, 1191
TaqI TCGA 4 cut(s) 495, 596, 1044, 1392
TasI AATT 6 cut(s) 110, 500, 533, 903, 1220, 1241
TatI WGTACW 2 cut(s) 314, 1145
TfiI GAWTC 5 cut(s) 334, 593, 700, 1323, 1465
Tru1I TTAA 4 cut(s) 42, 902, 1053, 1083
Tru9I TTAA 4 cut(s) 42, 902, 1053, 1083
TscAI CASTG 3 cut(s) 421, 667, 672
TseFI GTSAC 1 cut(s) 1036
TseI GCWGC 1 cut(s) 603
Tsp45I GTSAC 1 cut(s) 1036
TspDTI ATGAA 9 cut(s) 389, 477, 481, 488, 593, 870, 975, 1276, 1278
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 3 cut(s) 421, 667, 672
VpaK11BI GGWCC 1 cut(s) 1304
VspI ATTAAT 1 cut(s) 1053
XapI RAATTY 2 cut(s) 500, 1241
XbaI TCTAGA 1 cut(s) 1253
XceI RCATGY 3 cut(s) 610, 1184, 1317
XcmI CCANNNNNNNNNTGG 1 cut(s) 1315
XmnI GAANNNNTTC 2 cut(s) 189, 269
XspI CTAG 4 cut(s) 386, 1011, 1254, 1434
Zsp2I ATGCAT 1 cut(s) 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.