RLG00000017018

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004522
Physical Location & Seq
Forward (+)
12126141 .. 12129485
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017018

Sequence Viewer

Length: 1380 bp
ATGTTCATTCCATCGAAAGAAGTTCTCCTATTTCTTGTTCCGAAGCACTATGAGACCTTCATTCTGGCAGTGCTCTCTATTGGACAACTAACAGCACAAAAGGATGCTACGAGTTTGTCAGACTCCGACGACAATGAACATAGAGTTGATGATTGTGATGAAACTAGGTACGGGAAGTGGTTCAAGACAAGGATTTTTGGAAAAATCCATGTATTTGTGCCAAGCGCAGGGGGTGCAAAAATGATTTTTTCAAATGATTTTGTAAAGTTCAACAAAGGCTATGTGAAATCAATGGCAGATTGTGTTGGAAAGAACAGCTTGCTCTGTGTACCACATGAAAACCACAGAAGGATAAGGCGCCTTCTATCAGATCCATTCTCCATGAACTCTTTATCTCAATTTGTTCAGAAATTTGATAAAATGCTGTGCCAGAAGTTGAAGAAGCTAGAAGAAGGAGGAAAAAGCTTCGTGGTGCTTGAATTTGGTATGAAGATGACATTTGATGCAATGTGCAGCATGCTAATGAGTGTCACTGAAGATTCATTGTTACGGAAGATTGAGAAAGATTGCATTACTATTTCAGATGCAATGTTATCCCTTCCAGTCATGATTCCAGGCACTAGATATTACAAAGGCATCAAGGCACGCAGACGTCTTATGGAAACCTTTAAGGACATGATTGACAGAAGAAGAAGTGGGAAGGAGTCTCCAGAAGACTTCCTACAGTCCATGTTAGACAGAGATTCATACCCTCCCAATGAAAAGCTTCAAGACTCGGAGATTATGGACAACCTATTGACACTGACAATTGCAGGGCAGACAACCACTGCAGCTGCGATAATGTGGAGTGTCAAGTTTCTGGACGAGAACAAAGAAGCCCAAGACAGACTCAGAGAGGAACAGTTGTCAATAGCAAAGTCTAAGCCAGATGGAGCTTCAGTTACACTTGAAGATATCAAAGATATGTCCTACTGTTTGAAGGTTGTCAAAGAGACACTGAGGATGGCCAATGTCCTTCTCTGGTTTCCTCGCGTTGCACTCAGTGACTGCACCATACAAGGTTTTGAAATAAAGAGAGGATGGCATGCGAACATAGATGCAACTTGCATACATTATGATCCAGATTTGTATGCAGACCCTATGCAGTTCAACCCAGATAGATTTGATGAAATGCAAAAGCCAAATAGCTTTATACCATTTGGTTCAGGACCCAGAACATGCTTAGGAATCAATATGGCAAAGGTGACAATGCTGGTCTTTTTACACCGTTTAAGTACTGGTTACAGGTGGACAGTCAATGATCTGGATACTAGCTTAGAAAAGAAGGCACACATTCCTAGACTAAGAAGTGGATGTCCTATTACTTTGAAGGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

460

Amino Acids

52.47

Weight (kDa)

8.49

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 436 3.6e-62 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 357
AccII CGCG 1 cut(s) 1032
AclWI GGATC 2 cut(s) 365, 1112
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 2 cut(s) 410, 479
AcuI CTGAAG 2 cut(s) 555, 921
AcyI GRCGYC 2 cut(s) 358, 652
AdeI CACNNNGTG 1 cut(s) 1043
AfaI GTAC 3 cut(s) 170, 330, 1276
AfiI CCNNNNNNNGG 1 cut(s) 227
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 8 cut(s) 318, 445, 465, 766, 833, 935, 1188, 1314
AluI AGCT 8 cut(s) 318, 445, 465, 766, 833, 935, 1188, 1314
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 47, 711, 986
AlwI GGATC 2 cut(s) 365, 1112
AlwNI CAGNNNCTG 1 cut(s) 1047
AoxI GGCC 2 cut(s) 1005, 1371
ApeKI GCWGC 3 cut(s) 513, 830, 833
ApoI RAATTY 2 cut(s) 410, 479
Asp700I GAANNNNTTC 2 cut(s) 179, 765
AspLEI GCGC 2 cut(s) 227, 360
AspS9I GGNCC 1 cut(s) 1208
AsuHPI GGTGA 1 cut(s) 1255
AvaII GGWCC 1 cut(s) 1208
BalI TGGCCA 1 cut(s) 1007
BanI GGYRCC 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 705, 737
BbsI GAAGAC 1 cut(s) 720
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 3 cut(s) 525, 820, 842
BccI CCATC 4 cut(s) 19, 923, 997, 1074
BciT130I CCWGG 1 cut(s) 615
BciVI GTATCC 1 cut(s) 1300
BcoDI GTCTC 3 cut(s) 47, 711, 986
BfaI CTAG 5 cut(s) 165, 446, 621, 1311, 1338
BfmI CTRYAG 2 cut(s) 722, 828
BfoI RGCGCY 1 cut(s) 361
BfuI GTATCC 1 cut(s) 1300
BisI GCNGC 3 cut(s) 514, 831, 834
BlsI GCNGC 3 cut(s) 515, 832, 835
BmcAI AGTACT 1 cut(s) 1276
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 1208
BmgT120I GGNCC 1 cut(s) 1208
BmiI GGNNCC 2 cut(s) 359, 1210
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 5 cut(s) 94, 493, 574, 645, 1087
BpiI GAAGAC 1 cut(s) 720
BpmI CTGGAG 1 cut(s) 693
Bpu10I CCTNAGC 1 cut(s) 1222
BsaHI GRCGYC 2 cut(s) 358, 652
BsaI GGTCTC 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 924, 954
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 602, 1282
Bse3DI GCAATG 2 cut(s) 513, 594
BseBI CCWGG 1 cut(s) 615
BseGI GGATG 4 cut(s) 109, 1008, 1085, 1358
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 2 cut(s) 513, 594
BseMII CTCAG 3 cut(s) 904, 989, 1054
BseNI ACTGG 2 cut(s) 602, 1282
BseXI GCAGC 3 cut(s) 525, 820, 842
BsgI GTGCAG 2 cut(s) 532, 1033
Bsh1236I CGCG 1 cut(s) 1032
BshFI GGCC 2 cut(s) 1007, 1373
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 3 cut(s) 47, 711, 986
BsnI GGCC 2 cut(s) 1007, 1373
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 370, 1117, 1300
BspANI GGCC 2 cut(s) 1007, 1373
BspCNI CTCAG 3 cut(s) 903, 990, 1053
BspFNI CGCG 1 cut(s) 1032
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 359, 1210
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 2 cut(s) 365, 1112
BspT107I GGYRCC 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 513, 594
BsrI ACTGG 2 cut(s) 602, 1282
BssMI GATC 3 cut(s) 370, 1117, 1300
BssNI GRCGYC 2 cut(s) 358, 652
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 5 cut(s) 726, 903, 974, 1268, 1294
BstACI GRCGYC 2 cut(s) 358, 652
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 4 cut(s) 320, 518, 646, 1086
BstDEI CTNAG 7 cut(s) 890, 921, 998, 1040, 1222, 1315, 1343
BstF5I GGATG 4 cut(s) 109, 1008, 1085, 1358
BstFNI CGCG 1 cut(s) 1032
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 2 cut(s) 227, 360
BstKTI GATC 3 cut(s) 373, 1120, 1303
BstMAI GTCTC 3 cut(s) 47, 711, 986
BstMBI GATC 3 cut(s) 370, 1117, 1300
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 3 cut(s) 520, 1088, 1221
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 2 cut(s) 722, 828
BstUI CGCG 1 cut(s) 1032
BstV1I GCAGC 3 cut(s) 525, 820, 842
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 2 cut(s) 1007, 1373
BtsCI GGATG 4 cut(s) 109, 1008, 1085, 1358
BtsI GCAGTG 2 cut(s) 75, 825
BtsIMutI CAGTG 6 cut(s) 75, 531, 800, 825, 995, 1048
Cac8I GCNNGC 4 cut(s) 320, 518, 646, 1086
CaiI CAGNNNCTG 1 cut(s) 1047
CciI TCATGA 1 cut(s) 606
CfoI GCGC 2 cut(s) 227, 360
Cfr13I GGNCC 1 cut(s) 1208
Csp6I GTAC 3 cut(s) 169, 329, 1275
CviAII CATG 9 cut(s) 209, 335, 382, 517, 607, 676, 730, 1085, 1218
CviQI GTAC 3 cut(s) 169, 329, 1275
DdeI CTNAG 7 cut(s) 890, 921, 998, 1040, 1222, 1315, 1343
DinI GGCGCC 1 cut(s) 359
DpnI GATC 3 cut(s) 372, 1119, 1302
DpnII GATC 3 cut(s) 370, 1117, 1300
DraIII CACNNNGTG 1 cut(s) 1043
EaeI YGGCCR 1 cut(s) 1005
Eco147I AGGCCT 1 cut(s) 1373
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 1 cut(s) 1208
Eco57I CTGAAG 2 cut(s) 555, 921
EcoO109I RGGNCCY 1 cut(s) 1208
EcoRII CCWGG 1 cut(s) 613
EcoRV GATATC 1 cut(s) 955
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
FaeI CATG 9 cut(s) 212, 338, 385, 520, 610, 679, 733, 1088, 1221
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 9 cut(s) 208, 334, 381, 516, 606, 675, 729, 1084, 1217
Fnu4HI GCNGC 3 cut(s) 514, 831, 834
FokI GGATG 4 cut(s) 116, 1015, 1092, 1365
Fsp4HI GCNGC 3 cut(s) 514, 831, 834
FspBI CTAG 5 cut(s) 165, 446, 621, 1311, 1338
GlaI GCGC 2 cut(s) 226, 359
GluI GCNGC 3 cut(s) 514, 831, 834
GsuI CTGGAG 1 cut(s) 693
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 2 cut(s) 1007, 1373
HhaI GCGC 2 cut(s) 227, 360
Hin1I GRCGYC 2 cut(s) 358, 652
Hin1II CATG 9 cut(s) 212, 338, 385, 520, 610, 679, 733, 1088, 1221
Hin6I GCGC 2 cut(s) 225, 358
HinP1I GCGC 2 cut(s) 225, 358
HindIII AAGCTT 2 cut(s) 463, 764
HinfI GANTC 8 cut(s) 122, 539, 610, 704, 743, 773, 888, 1227
HphI GGTGA 1 cut(s) 1255
Hpy166II GTNNAC 2 cut(s) 329, 1290
Hpy188I TCNGA 8 cut(s) 42, 121, 127, 370, 408, 583, 778, 893
Hpy188III TCNNGA 8 cut(s) 184, 607, 710, 770, 860, 1121, 1206, 1304
Hpy8I GTNNAC 2 cut(s) 329, 1290
Hpy99I CGWCG 1 cut(s) 131
HpyCH4III ACNGT 5 cut(s) 726, 903, 974, 1268, 1294
HpyCH4IV ACGT 1 cut(s) 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 7 cut(s) 890, 921, 998, 1040, 1222, 1315, 1343
HpySE526I ACGT 1 cut(s) 652
Hsp92I GRCGYC 2 cut(s) 358, 652
Hsp92II CATG 9 cut(s) 212, 338, 385, 520, 610, 679, 733, 1088, 1221
HspAI GCGC 2 cut(s) 225, 358
KasI GGCGCC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 370, 1117, 1300
LmnI GCTCC 1 cut(s) 932
Lsp1109I GCAGC 3 cut(s) 525, 820, 842
LweI GCATC 5 cut(s) 94, 493, 574, 645, 1087
MaeI CTAG 5 cut(s) 165, 446, 621, 1311, 1338
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 6 cut(s) 529, 546, 940, 1043, 1243, 1280
MalI GATC 3 cut(s) 372, 1119, 1302
MboI GATC 3 cut(s) 370, 1117, 1300
MboII GAAGA 9 cut(s) 451, 461, 502, 548, 565, 699, 702, 725, 962
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 1007
MluCI AATT 4 cut(s) 398, 410, 479, 807
MluNI TGGCCA 1 cut(s) 1007
Mly113I GGCGCC 1 cut(s) 358
MlyI GAGTC 4 cut(s) 116, 713, 767, 882
MmeI TCCRAC 2 cut(s) 150, 286
MnlI CCTC 6 cut(s) 449, 762, 889, 993, 1038, 1070
Mox20I TGGCCA 1 cut(s) 1007
MroXI GAANNNNTTC 2 cut(s) 179, 765
MscI TGGCCA 1 cut(s) 1007
MseI TTAA 2 cut(s) 669, 1271
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 615
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 1032
MwoI GCNNNNNNNGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 358
NdeII GATC 3 cut(s) 370, 1117, 1300
NlaIII CATG 9 cut(s) 212, 338, 385, 520, 610, 679, 733, 1088, 1221
NlaIV GGNNCC 2 cut(s) 359, 1210
NmuCI GTSAC 3 cut(s) 529, 1043, 1243
NspI RCATGY 3 cut(s) 520, 1088, 1221
PaeI GCATGC 2 cut(s) 520, 1088
PagI TCATGA 1 cut(s) 606
PceI AGGCCT 1 cut(s) 1373
PdmI GAANNNNTTC 2 cut(s) 179, 765
PfeI GAWTC 4 cut(s) 539, 610, 743, 1227
PkrI GCNGC 3 cut(s) 515, 832, 835
PleI GAGTC 4 cut(s) 116, 712, 767, 882
PluTI GGCGCC 1 cut(s) 361
PpsI GAGTC 4 cut(s) 116, 712, 767, 882
PpuMI RGGWCCY 1 cut(s) 1208
Psp5II RGGWCCY 1 cut(s) 1208
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 359, 1210
PspPI GGNCC 1 cut(s) 1208
PspPPI RGGWCCY 1 cut(s) 1208
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 1047
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 3 cut(s) 170, 330, 1276
RsaNI GTAC 3 cut(s) 169, 329, 1275
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 2 cut(s) 669, 1271
SatI GCNGC 3 cut(s) 514, 831, 834
Sau3AI GATC 3 cut(s) 370, 1117, 1300
Sau96I GGNCC 1 cut(s) 1208
ScaI AGTACT 1 cut(s) 1276
SchI GAGTC 4 cut(s) 116, 713, 767, 882
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 5 cut(s) 94, 493, 574, 645, 1087
SfcI CTRYAG 2 cut(s) 722, 828
SfoI GGCGCC 1 cut(s) 359
SinI GGWCC 1 cut(s) 1208
SmiMI CAYNNNNRTG 1 cut(s) 521
SphI GCATGC 2 cut(s) 520, 1088
Sse9I AATT 4 cut(s) 398, 410, 479, 807
SseBI AGGCCT 1 cut(s) 1373
SspDI GGCGCC 1 cut(s) 357
SspMI CTAG 5 cut(s) 165, 446, 621, 1311, 1338
StuI AGGCCT 1 cut(s) 1373
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 5 cut(s) 726, 903, 974, 1268, 1294
TaiI ACGT 1 cut(s) 655
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 398, 410, 479, 807
TatI WGTACW 1 cut(s) 1274
TfiI GAWTC 4 cut(s) 539, 610, 743, 1227
Tru1I TTAA 2 cut(s) 669, 1271
Tru9I TTAA 2 cut(s) 669, 1271
TscAI CASTG 6 cut(s) 75, 538, 807, 832, 1002, 1048
TseFI GTSAC 3 cut(s) 529, 1043, 1243
TseI GCWGC 3 cut(s) 513, 830, 833
Tsp45I GTSAC 3 cut(s) 529, 1043, 1243
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 6 cut(s) 75, 538, 807, 832, 1002, 1048
VpaK11BI GGWCC 1 cut(s) 1208
XapI RAATTY 2 cut(s) 410, 479
XceI RCATGY 3 cut(s) 520, 1088, 1221
XmnI GAANNNNTTC 2 cut(s) 179, 765
XspI CTAG 5 cut(s) 165, 446, 621, 1311, 1338
ZraI GACGTC 1 cut(s) 653
ZrmI AGTACT 1 cut(s) 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.