Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000837.1

Orthogroup ID

OG0004522

Physical Location & Seq

Genomic Coordinates Reverse (-)

398163 .. 400854

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000837.1_g000081.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgatattttctaatgattttgctaagttcaacaaaggatatgtgaaatcaatggcagattgtattggagataaaagcttgctctgtgtaccacatgagaaccataaaagaataaggcgcttattatcagatcctttctccatgaattctttatcttcgttcattgagaaattcgatagaatgctgtgtcagaagctgaagaaactagaacaaggtgggaaaagcttttcggtgcttgacttcagtatgaggatgacatttgaagcgatgtgctgcatgctaatgagtgtcatggatgagcccttgctaaggcagcttgagaaagactgcactgcagtctcggatggaatcttatctgttcctgtcatgattccaggcactagatattacaaaggcatcaaggcacgcagacgtctcatggaaacctttaaagacatgattgccagaagaaggagtgggaaggagttgccagaaccagaagatttcctacagtccatgttgcgaagagactcataccctcccaatgaaaagctgcaagactcagaaatcatggacaacctaatgacacttataattgcagggcagacgaccacttcagctgcaatgatgtggagtgtcaagtttctggatgagaaccaacaagtccaaaacattcttagggaggaacaattgtctatagccacatccaagcccgaaggagcatcaattaccctcgaagatattaataatatgtcctactgttggaaggttgttaaagaaacagtaaggatgtcaactgtggttatgtggtatcctcgagttgcactcagtgactgtactatagaaggttttgagataaagaaagggtggcatgtgaacattgacgcgacatgcatacacaacgacccagatttgtacccagacccttccaaattcaacccttctagatttgatgaaatacaaaagccatatagtttcataccttttgggtcaggacccaggacatgcttgggaatcaatatggccaagatgaccatgatggtctttcttcaccgtctcactactgcatataggtggacagtcgataatcttgataccagtctagaaaagaaggcccatattcctagactaagaagtggttgtcccattaccttgacggccttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

381

Amino Acids

43.77

Weight (kDa)

8.54

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004522)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12750 FvH4_1g12750 FvH4_6g26890
malus_domestica	MD15G1255700.v1.1
prunus_persica	Prupe.7G158700_v2.0.a1 Prupe.7G158700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100851 RchiOBHm_Chr2g0128621 RchiOBHm_Chr7g0201921
rosa_laevigata	RLG00000003640 RLG00000017018 RLG00000019013
rosa_multiflora	Rmu_sc0000837.1_g000081 Rmu_sc0001659.1_g000026 Rmu_sc0006976.1_g000010
rosa_roxburghii	Rroxscaffold_2G00141800
rosa_rugosa	Rorug02G0093300 Rorug02G0279400
rosa_samantha	Rh2AG140700 Rh2AG332800 Rh2BG145800 Rh2BG340700 Rh2CG147000 Rh2CG319500 Rh2DG146400 Rh2DG357200 Rh7CG205200 Rh7DG200200
rosa_wichuraiana	Rw2G011030 Rw2G026870 Rw2G027130 Rw7G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AatII	GACGTC	1 cut(s)	415
AccII	CGCG	1 cut(s)	866
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	3 cut(s)	145, 170, 911
AcuI	CTGAAG	3 cut(s)	218, 226, 579
AcyI	GRCGYC	1 cut(s)	412
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	3 cut(s)	90, 817, 896
AfiI	CCNNNNNNNGG	3 cut(s)	309, 450, 741
AgsI	TTSAA	3 cut(s)	31, 263, 916
AjnI	CCWGG	2 cut(s)	373, 977
AluBI	AGCT	6 cut(s)	78, 196, 225, 316, 532, 599
AluI	AGCT	6 cut(s)	78, 196, 225, 316, 532, 599
Alw26I	GTCTC	4 cut(s)	343, 419, 501, 1040
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	2 cut(s)	196, 813
Ama87I	CYCGRG	1 cut(s)	795
AoxI	GGCC	3 cut(s)	1002, 1092, 1137
ApeKI	GCWGC	4 cut(s)	273, 313, 532, 599
ApoI	RAATTY	3 cut(s)	145, 170, 911
AseI	ATTAAT	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	974, 1093
AsuHPI	GGTGA	1 cut(s)	1022
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	1 cut(s)	974
BalI	TGGCCA	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbvI	GCAGC	4 cut(s)	260, 325, 519, 586
BccI	CCATC	2 cut(s)	338, 1012
BciT130I	CCWGG	2 cut(s)	375, 979
BciVI	GTATCC	1 cut(s)	801
BcoDI	GTCTC	4 cut(s)	343, 419, 501, 1040
BfaI	CTAG	5 cut(s)	206, 381, 924, 1082, 1104
BfmI	CTRYAG	4 cut(s)	333, 488, 675, 819
BfoI	RGCGCY	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	801
BisI	GCNGC	4 cut(s)	274, 314, 533, 600
BlsI	GCNGC	4 cut(s)	275, 315, 534, 601
Bme1390I	CCNGG	2 cut(s)	375, 979
Bme18I	GGWCC	1 cut(s)	974
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	974, 1093
BmiI	GGNNCC	1 cut(s)	976
BmrFI	CCNGG	2 cut(s)	375, 979
BmsI	GCATC	2 cut(s)	405, 710
BplI	GAGNNNNNCTC	2 cut(s)	789, 821
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	977
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 450, 741
Bse1I	ACTGG	1 cut(s)	1077
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	375, 979
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	6 cut(s)	258, 301, 349, 634, 683, 774
BseLI	CCNNNNNNNGG	3 cut(s)	309, 450, 741
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	555, 820
BseNI	ACTGG	1 cut(s)	1077
BseXI	GCAGC	4 cut(s)	260, 325, 519, 586
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	866
BshFI	GGCC	3 cut(s)	1004, 1094, 1139
BsiHKCI	CYCGRG	1 cut(s)	795
BslFI	GGGAC	1 cut(s)	1107
BslI	CCNNNNNNNGG	3 cut(s)	309, 450, 741
BsmAI	GTCTC	4 cut(s)	343, 419, 501, 1040
BsmBI	CGTCTC	2 cut(s)	419, 1040
BsmFI	GGGAC	1 cut(s)	1107
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	1004, 1094, 1139
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	3 cut(s)	1004, 1094, 1139
BspCNI	CTCAG	2 cut(s)	554, 819
BspFNI	CGCG	1 cut(s)	866
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	976
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	1077
BssECI	CCNNGG	1 cut(s)	977
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	375, 979
Bst4CI	ACNGT	7 cut(s)	492, 740, 763, 778, 815, 1034, 1060
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	3 cut(s)	80, 278, 406
BstDEI	CTNAG	6 cut(s)	24, 308, 541, 656, 806, 1109
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	6 cut(s)	258, 301, 349, 634, 683, 774
BstFNI	CGCG	1 cut(s)	866
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	4 cut(s)	343, 419, 501, 1040
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	375, 979
BstNSI	RCATGY	4 cut(s)	280, 854, 873, 987
BstSCI	CCNGG	2 cut(s)	373, 977
BstSFI	CTRYAG	4 cut(s)	333, 488, 675, 819
BstUI	CGCG	1 cut(s)	866
BstV1I	GCAGC	4 cut(s)	260, 325, 519, 586
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	1004, 1094, 1139
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	6 cut(s)	258, 301, 349, 634, 683, 774
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 814
Cac8I	GCNNGC	3 cut(s)	80, 278, 406
CaiI	CAGNNNCTG	2 cut(s)	196, 813
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	974, 1093
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	89, 816, 895
CviQI	GTAC	3 cut(s)	89, 816, 895
DdeI	CTNAG	6 cut(s)	24, 308, 541, 656, 806, 1109
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	809
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	974
Eco57I	CTGAAG	3 cut(s)	218, 226, 579
Eco88I	CYCGRG	1 cut(s)	795
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	974
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	373, 977
EcoT22I	ATGCAT	1 cut(s)	875
EcoT38I	GRGCYC	1 cut(s)	303
Esp3I	CGTCTC	2 cut(s)	419, 1040
FaqI	GGGAC	1 cut(s)	1107
Fnu4HI	GCNGC	4 cut(s)	274, 314, 533, 600
FokI	GGATG	6 cut(s)	265, 308, 356, 641, 670, 781
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	274, 314, 533, 600
FspBI	CTAG	5 cut(s)	206, 381, 924, 1082, 1104
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	4 cut(s)	274, 314, 533, 600
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	1004, 1094, 1139
HgaI	GACGC	1 cut(s)	872
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	774
HindII	GTYRAC	1 cut(s)	774
HindIII	AAGCTT	2 cut(s)	76, 223
HinfI	GANTC	5 cut(s)	348, 370, 509, 539, 993
HphI	GGTGA	1 cut(s)	1022
Hpy166II	GTNNAC	4 cut(s)	89, 774, 856, 1056
Hpy188I	TCNGA	4 cut(s)	130, 192, 343, 544
Hpy188III	TCNNGA	6 cut(s)	367, 626, 924, 972, 1070, 1082
Hpy8I	GTNNAC	4 cut(s)	89, 774, 856, 1056
HpyAV	CCTTC	8 cut(s)	444, 454, 689, 739, 818, 915, 930, 1084
HpyCH4III	ACNGT	7 cut(s)	492, 740, 763, 778, 815, 1034, 1060
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	9 cut(s)	276, 330, 335, 535, 578, 602, 803, 873, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	6 cut(s)	24, 308, 541, 656, 806, 1109
HpySE526I	ACGT	1 cut(s)	412
Hsp92I	GRCGYC	1 cut(s)	412
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	4 cut(s)	260, 325, 519, 586
LweI	GCATC	2 cut(s)	405, 710
MaeI	CTAG	5 cut(s)	206, 381, 924, 1082, 1104
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	809
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	7 cut(s)	147, 211, 459, 491, 516, 728, 1019
MfeI	CAATTG	1 cut(s)	668
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	1004
MluCI	AATT	6 cut(s)	145, 170, 573, 668, 705, 911
MluNI	TGGCCA	1 cut(s)	1004
MlyI	GAGTC	2 cut(s)	503, 533
MmeI	TCCRAC	1 cut(s)	722
MnlI	CCTC	5 cut(s)	243, 528, 655, 722, 804
Mox20I	TGGCCA	1 cut(s)	1004
Mph1103I	ATGCAT	1 cut(s)	875
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	3 cut(s)	429, 723, 753
MslI	CAYNNNNRTG	2 cut(s)	281, 1051
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	599
MspR9I	CCNGG	2 cut(s)	375, 979
MunI	CAATTG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	375, 979
MvnI	CGCG	1 cut(s)	866
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	976
NmuCI	GTSAC	1 cut(s)	809
NsiI	ATGCAT	1 cut(s)	875
NspI	RCATGY	4 cut(s)	280, 854, 873, 987
PaeI	GCATGC	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	795
PagI	TCATGA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	348, 370, 993
PkrI	GCNGC	4 cut(s)	275, 315, 534, 601
PleI	GAGTC	2 cut(s)	503, 533
PpsI	GAGTC	2 cut(s)	503, 533
PpuMI	RGGWCCY	1 cut(s)	974
PshBI	ATTAAT	1 cut(s)	723
PsiI	TTATAA	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	974
Psp6I	CCWGG	2 cut(s)	373, 977
PspGI	CCWGG	2 cut(s)	373, 977
PspN4I	GGNNCC	1 cut(s)	976
PspPI	GGNCC	2 cut(s)	974, 1093
PspPPI	RGGWCCY	1 cut(s)	974
PspXI	VCTCGAGB	1 cut(s)	795
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	2 cut(s)	196, 813
PsuI	RGATCY	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	3 cut(s)	90, 817, 896
RsaNI	GTAC	3 cut(s)	89, 816, 895
RseI	CAYNNNNRTG	2 cut(s)	281, 1051
SaqAI	TTAA	3 cut(s)	429, 723, 753
SatI	GCNGC	4 cut(s)	274, 314, 533, 600
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	974, 1093
SchI	GAGTC	2 cut(s)	503, 533
ScrFI	CCNGG	2 cut(s)	375, 979
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	405, 710
SfcI	CTRYAG	4 cut(s)	333, 488, 675, 819
Sfr274I	CTCGAG	1 cut(s)	795
SinI	GGWCC	1 cut(s)	974
SlaI	CTCGAG	1 cut(s)	795
SmiMI	CAYNNNNRTG	2 cut(s)	281, 1051
SmlI	CTYRAG	2 cut(s)	317, 795
SmoI	CTYRAG	2 cut(s)	317, 795
SphI	GCATGC	1 cut(s)	280
Sse9I	AATT	6 cut(s)	145, 170, 573, 668, 705, 911
SspMI	CTAG	5 cut(s)	206, 381, 924, 1082, 1104
StyD4I	CCNGG	2 cut(s)	373, 977
TaaI	ACNGT	7 cut(s)	492, 740, 763, 778, 815, 1034, 1060
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	4 cut(s)	174, 714, 796, 1062
TasI	AATT	6 cut(s)	145, 170, 573, 668, 705, 911
TatI	WGTACW	1 cut(s)	815
TfiI	GAWTC	3 cut(s)	348, 370, 993
Tru1I	TTAA	3 cut(s)	429, 723, 753
Tru9I	TTAA	3 cut(s)	429, 723, 753
TscAI	CASTG	2 cut(s)	337, 814
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	4 cut(s)	273, 313, 532, 599
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	5 cut(s)	151, 158, 540, 946, 948
TspRI	CASTG	2 cut(s)	337, 814
VpaK11BI	GGWCC	1 cut(s)	974
VspI	ATTAAT	1 cut(s)	723
XagI	CCTNNNNNAGG	1 cut(s)	307
XapI	RAATTY	3 cut(s)	145, 170, 911
XbaI	TCTAGA	2 cut(s)	923, 1081
XceI	RCATGY	4 cut(s)	280, 854, 873, 987
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XhoI	CTCGAG	1 cut(s)	795
XspI	CTAG	5 cut(s)	206, 381, 924, 1082, 1104
ZraI	GACGTC	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.