Rh2DG146400

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004522
Physical Location & Seq
Forward (+)
12280977 .. 12286389
5413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG146400.1

Sequence Viewer

Length: 1464 bp
ATGTTCATTCCATCAAAAGAAGTTCTCCTATTTCTTGCTCAGAAGCACTATGAGACCTTCATTCTTGCAGTGCTTTCCATTGGAGTAATATTTTTGGTTCCAAAATTTGGTTGGAAAACGGTTGCAATTAGCTACAGAGGTCATATCCGTGGCCGGTTGGGTTTACCCTTTATAGGTGAAACCTTTTCTTTGCTTTCAGCAACTAACAGCACAAAAGGATGCTACGAGTTTGTCAGACTCCGACGACAATGGTACGGGAAGTGGTTCAAGACAAGGATTTTCGGAAAGATCCATGTATTTGTGCCAAGCGCAGAGGGTGCAAAAATGATTTTTTCAAATGATTTTGTAAAGTTCAACAAAGGCTATGTGAAATCAATGGCAGATTGTGTTGGAAAGAACAGCTTGCTCTGTGTACCACATGAAAACCACAGAAGGATAAGGCGCCTTCTATCAGATCCTTTCTCCATGAACTCTTTATCTCAATTTGTTCAGAAATTTGATAAAATGCTGTGCCAGAAGTTGAAGAAGCTAGAAGAAGGAGGAAAAAGCTTTGTGGTGCTTGAATTTGGTATGAAGATGACATTTGATGCAATGTGCAGCATGCTAATGAGTGTCACTGAGGATTCATTGTTACGGAAGATTGAGAAAGATTGCACTACTATTTCAGATGCAATGTTATCCCTTCCAGTCATGATTCCAGGCACCAGATATTACAAAGGCATCAAGGCACGCGGACGTCTTATGGAAACCTTTAAGGACATGATTGACAGAAGAAGAAGCGGGAAGGAGTCTCCAGAAGACTTCCTACAGTCCACGTTAGACAGAGATTCATACCCTCCCAATGAAAAGCTTCAAGACTCGGAGATTATAGACAACCTATTGACACTGATAATTGCAGGGCAGACAACCACTGCAGCTGCGATAATGTGGAGTGTCAAGTTTCTGGACGAGAACAAAGAAGCCCAAGACAGACTCAGAGAGGAACAGTTGTCAATAGCAAAGTCTAAGCCAGATGGAGCTTCAGTTACACTTGAAGATATCAAAGATATGTCCTACTGTTTGAAGGTTATCAAAGAGACACTGAGGATGGCCAATGTCCTTCTCTGGTTTCCTCGCTTTGCACTCAGTGACTGCACTATACAAGGTTTTGAAATAAAGAAAGGGTGGCATGCGAACATAGATGCAACTTGCATACACTACGATCCAGATTTGTATGCAGACCCTATGCAGTTCAACCCAGATAGATTTGATGAAATGCAAAAGCCAAATAGCTTTATACCATTTGGTTCAGGACCCAGAACATGCTTAGGAATCAATATGGCAAAGGTGACAATGCTGGTCTTTTTACACCGTTTAAGTAGTGGTTACAGGTGGACAGTCAATGATCTGGATACTAGCTTAGAAAAGAAGGCACACATTCCTAGACTAAGAAGTGGATGTCCTATTACTTTGAAGGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

487

Amino Acids

55.73

Weight (kDa)

9.25

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 54 - 465 1e-64 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 739
AccB1I GGYRCC 2 cut(s) 441, 701
AccB7I CCANNNNNTGG 1 cut(s) 107
AccII CGCG 1 cut(s) 732
AciI CCGC 2 cut(s) 732, 780
AclWI GGATC 3 cut(s) 283, 449, 1196
AcoI YGGCCR 2 cut(s) 151, 1089
AcsI RAATTY 3 cut(s) 104, 494, 563
AcuI CTGAAG 1 cut(s) 1005
AcyI GRCGYC 2 cut(s) 442, 736
AdeI CACNNNGTG 1 cut(s) 1127
AfaI GTAC 2 cut(s) 254, 414
AfiI CCNNNNNNNGG 2 cut(s) 107, 173
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 9 cut(s) 132, 402, 529, 549, 850, 917, 1019, 1272, 1398
AluI AGCT 9 cut(s) 132, 402, 529, 549, 850, 917, 1019, 1272, 1398
Alw26I GTCTC 3 cut(s) 47, 795, 1070
AlwI GGATC 3 cut(s) 283, 449, 1196
AlwNI CAGNNNCTG 1 cut(s) 1131
AoxI GGCC 3 cut(s) 151, 1089, 1455
ApeKI GCWGC 3 cut(s) 597, 914, 917
ApoI RAATTY 3 cut(s) 104, 494, 563
Asp700I GAANNNNTTC 2 cut(s) 263, 849
AspLEI GCGC 2 cut(s) 311, 444
AspS9I GGNCC 1 cut(s) 1292
AsuHPI GGTGA 2 cut(s) 188, 1339
AvaII GGWCC 1 cut(s) 1292
BalI TGGCCA 1 cut(s) 1091
BanI GGYRCC 2 cut(s) 441, 701
BarI GAAGNNNNNNTAC 2 cut(s) 789, 821
BbsI GAAGAC 1 cut(s) 804
BbvI GCAGC 3 cut(s) 609, 904, 926
BccI CCATC 3 cut(s) 19, 1007, 1081
BciT130I CCWGG 1 cut(s) 699
BciVI GTATCC 1 cut(s) 1384
BcoDI GTCTC 3 cut(s) 47, 795, 1070
BfaI CTAG 3 cut(s) 530, 1395, 1422
BfmI CTRYAG 3 cut(s) 133, 806, 912
BfoI RGCGCY 1 cut(s) 445
BfuI GTATCC 1 cut(s) 1384
BisI GCNGC 3 cut(s) 598, 915, 918
BlsI GCNGC 3 cut(s) 599, 916, 919
Bme1390I CCNGG 1 cut(s) 699
Bme18I GGWCC 1 cut(s) 1292
BmgT120I GGNCC 1 cut(s) 1292
BmiI GGNNCC 4 cut(s) 99, 443, 703, 1294
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 5 cut(s) 209, 577, 658, 729, 1171
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 1306
BsaHI GRCGYC 2 cut(s) 442, 736
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 173
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 686
Bse3DI GCAATG 2 cut(s) 597, 678
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 3 cut(s) 224, 1092, 1442
BseLI CCNNNNNNNGG 2 cut(s) 107, 173
BseMI GCAATG 2 cut(s) 597, 678
BseMII CTCAG 5 cut(s) 53, 609, 988, 1073, 1138
BseNI ACTGG 1 cut(s) 686
BseXI GCAGC 3 cut(s) 609, 904, 926
BsgI GTGCAG 2 cut(s) 616, 1117
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 3 cut(s) 153, 1091, 1457
BshNI GGYRCC 2 cut(s) 441, 701
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 107, 173
BsmAI GTCTC 3 cut(s) 47, 795, 1070
BsnI GGCC 3 cut(s) 153, 1091, 1457
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 4 cut(s) 288, 454, 1201, 1384
BspACI CCGC 2 cut(s) 732, 780
BspANI GGCC 3 cut(s) 153, 1091, 1457
BspCNI CTCAG 5 cut(s) 52, 610, 987, 1074, 1137
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 4 cut(s) 99, 443, 703, 1294
BspMAI CTGCAG 1 cut(s) 916
BspPI GGATC 3 cut(s) 283, 449, 1196
BspT107I GGYRCC 2 cut(s) 441, 701
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 597, 678
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 686
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 4 cut(s) 288, 454, 1201, 1384
BssNI GRCGYC 2 cut(s) 442, 736
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 6 cut(s) 121, 810, 987, 1058, 1352, 1378
BstACI GRCGYC 2 cut(s) 442, 736
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 4 cut(s) 404, 602, 730, 1170
BstDEI CTNAG 9 cut(s) 39, 618, 974, 1005, 1082, 1124, 1306, 1399, 1427
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 3 cut(s) 224, 1092, 1442
BstFNI CGCG 1 cut(s) 732
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 2 cut(s) 311, 444
BstKTI GATC 4 cut(s) 291, 457, 1204, 1387
BstMAI GTCTC 3 cut(s) 47, 795, 1070
BstMBI GATC 4 cut(s) 288, 454, 1201, 1384
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 3 cut(s) 604, 1172, 1305
BstSCI CCNGG 1 cut(s) 697
BstSFI CTRYAG 3 cut(s) 133, 806, 912
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 3 cut(s) 609, 904, 926
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 288, 454
BstYI RGATCY 2 cut(s) 288, 454
BsuI GTATCC 1 cut(s) 1384
BsuRI GGCC 3 cut(s) 153, 1091, 1457
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 3 cut(s) 224, 1092, 1442
BtsI GCAGTG 2 cut(s) 75, 909
BtsIMutI CAGTG 6 cut(s) 75, 615, 884, 909, 1079, 1132
Cac8I GCNNGC 4 cut(s) 404, 602, 730, 1170
CaiI CAGNNNCTG 1 cut(s) 1131
CciI TCATGA 1 cut(s) 690
CfoI GCGC 2 cut(s) 311, 444
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 1292
Csp6I GTAC 2 cut(s) 253, 413
CviAII CATG 8 cut(s) 293, 419, 466, 601, 691, 760, 1169, 1302
CviQI GTAC 2 cut(s) 253, 413
DdeI CTNAG 9 cut(s) 39, 618, 974, 1005, 1082, 1124, 1306, 1399, 1427
DinI GGCGCC 1 cut(s) 443
DpnI GATC 4 cut(s) 290, 456, 1203, 1386
DpnII GATC 4 cut(s) 288, 454, 1201, 1384
DraIII CACNNNGTG 1 cut(s) 1127
EaeI YGGCCR 2 cut(s) 151, 1089
Eco147I AGGCCT 1 cut(s) 1457
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 1039
Eco47I GGWCC 1 cut(s) 1292
Eco57I CTGAAG 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 1292
EcoRII CCWGG 1 cut(s) 697
EcoRV GATATC 1 cut(s) 1039
EgeI GGCGCC 1 cut(s) 443
EheI GGCGCC 1 cut(s) 443
FaeI CATG 8 cut(s) 296, 422, 469, 604, 694, 763, 1172, 1305
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 8 cut(s) 292, 418, 465, 600, 690, 759, 1168, 1301
FauI CCCGC 1 cut(s) 773
Fnu4HI GCNGC 3 cut(s) 598, 915, 918
FokI GGATG 3 cut(s) 231, 1099, 1449
Fsp4HI GCNGC 3 cut(s) 598, 915, 918
FspBI CTAG 3 cut(s) 530, 1395, 1422
GlaI GCGC 2 cut(s) 310, 443
GluI GCNGC 3 cut(s) 598, 915, 918
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 1 cut(s) 445
HaeIII GGCC 3 cut(s) 153, 1091, 1457
HapII CCGG 1 cut(s) 154
HhaI GCGC 2 cut(s) 311, 444
Hin1I GRCGYC 2 cut(s) 442, 736
Hin1II CATG 8 cut(s) 296, 422, 469, 604, 694, 763, 1172, 1305
Hin6I GCGC 2 cut(s) 309, 442
HinP1I GCGC 2 cut(s) 309, 442
HindIII AAGCTT 2 cut(s) 547, 848
HinfI GANTC 8 cut(s) 237, 623, 694, 788, 827, 857, 972, 1311
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 188, 1339
Hpy166II GTNNAC 4 cut(s) 164, 413, 813, 1374
Hpy188I TCNGA 9 cut(s) 42, 236, 242, 284, 454, 492, 667, 862, 977
Hpy188III TCNNGA 8 cut(s) 268, 691, 794, 854, 944, 1205, 1290, 1388
Hpy8I GTNNAC 4 cut(s) 164, 413, 813, 1374
Hpy99I CGWCG 1 cut(s) 246
HpyCH4III ACNGT 6 cut(s) 121, 810, 987, 1058, 1352, 1378
HpyCH4IV ACGT 2 cut(s) 736, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 9 cut(s) 39, 618, 974, 1005, 1082, 1124, 1306, 1399, 1427
HpySE526I ACGT 2 cut(s) 736, 815
Hsp92I GRCGYC 2 cut(s) 442, 736
Hsp92II CATG 8 cut(s) 296, 422, 469, 604, 694, 763, 1172, 1305
HspAI GCGC 2 cut(s) 309, 442
KasI GGCGCC 1 cut(s) 441
Kzo9I GATC 4 cut(s) 288, 454, 1201, 1384
LmnI GCTCC 1 cut(s) 1016
Lsp1109I GCAGC 3 cut(s) 609, 904, 926
LweI GCATC 5 cut(s) 209, 577, 658, 729, 1171
MaeI CTAG 3 cut(s) 530, 1395, 1422
MaeII ACGT 2 cut(s) 736, 815
MaeIII GTNAC 6 cut(s) 613, 630, 1024, 1127, 1327, 1364
MalI GATC 4 cut(s) 290, 456, 1203, 1386
MboI GATC 4 cut(s) 288, 454, 1201, 1384
MboII GAAGA 8 cut(s) 535, 545, 586, 649, 783, 786, 809, 1046
MflI RGATCY 2 cut(s) 288, 454
MlsI TGGCCA 1 cut(s) 1091
MluCI AATT 6 cut(s) 104, 126, 482, 494, 563, 891
MluNI TGGCCA 1 cut(s) 1091
Mly113I GGCGCC 1 cut(s) 442
MlyI GAGTC 4 cut(s) 231, 797, 851, 966
MmeI TCCRAC 3 cut(s) 92, 265, 370
MnlI CCTC 8 cut(s) 131, 307, 533, 613, 846, 973, 1077, 1122
Mox20I TGGCCA 1 cut(s) 1091
MroXI GAANNNNTTC 2 cut(s) 263, 849
MscI TGGCCA 1 cut(s) 1091
MseI TTAA 2 cut(s) 753, 1355
MslI CAYNNNNRTG 2 cut(s) 147, 605
Msp20I TGGCCA 1 cut(s) 1091
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 442
NdeII GATC 4 cut(s) 288, 454, 1201, 1384
NlaIII CATG 8 cut(s) 296, 422, 469, 604, 694, 763, 1172, 1305
NlaIV GGNNCC 4 cut(s) 99, 443, 703, 1294
NmuCI GTSAC 3 cut(s) 613, 1127, 1327
NspI RCATGY 3 cut(s) 604, 1172, 1305
PaeI GCATGC 2 cut(s) 604, 1172
PagI TCATGA 1 cut(s) 690
PceI AGGCCT 1 cut(s) 1457
PdmI GAANNNNTTC 2 cut(s) 263, 849
PfeI GAWTC 4 cut(s) 623, 694, 827, 1311
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 3 cut(s) 599, 916, 919
PleI GAGTC 4 cut(s) 231, 796, 851, 966
PluTI GGCGCC 1 cut(s) 445
PpsI GAGTC 4 cut(s) 231, 796, 851, 966
PpuMI RGGWCCY 1 cut(s) 1292
Psp5II RGGWCCY 1 cut(s) 1292
Psp6I CCWGG 1 cut(s) 697
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 4 cut(s) 99, 443, 703, 1294
PspPI GGNCC 1 cut(s) 1292
PspPPI RGGWCCY 1 cut(s) 1292
PstI CTGCAG 1 cut(s) 916
PstNI CAGNNNCTG 1 cut(s) 1131
PsuI RGATCY 2 cut(s) 288, 454
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 2 cut(s) 254, 414
RsaNI GTAC 2 cut(s) 253, 413
RseI CAYNNNNRTG 2 cut(s) 147, 605
SaqAI TTAA 2 cut(s) 753, 1355
SatI GCNGC 3 cut(s) 598, 915, 918
Sau3AI GATC 4 cut(s) 288, 454, 1201, 1384
Sau96I GGNCC 1 cut(s) 1292
SchI GAGTC 4 cut(s) 231, 797, 851, 966
ScrFI CCNGG 1 cut(s) 699
SfaNI GCATC 5 cut(s) 209, 577, 658, 729, 1171
SfcI CTRYAG 3 cut(s) 133, 806, 912
SfoI GGCGCC 1 cut(s) 443
SinI GGWCC 1 cut(s) 1292
SmiMI CAYNNNNRTG 2 cut(s) 147, 605
SphI GCATGC 2 cut(s) 604, 1172
Sse9I AATT 6 cut(s) 104, 126, 482, 494, 563, 891
SseBI AGGCCT 1 cut(s) 1457
SsiI CCGC 2 cut(s) 732, 780
SspDI GGCGCC 1 cut(s) 441
SspI AATATT 1 cut(s) 90
SspMI CTAG 3 cut(s) 530, 1395, 1422
StuI AGGCCT 1 cut(s) 1457
StyD4I CCNGG 1 cut(s) 697
TaaI ACNGT 6 cut(s) 121, 810, 987, 1058, 1352, 1378
TaiI ACGT 2 cut(s) 739, 818
TasI AATT 6 cut(s) 104, 126, 482, 494, 563, 891
TfiI GAWTC 4 cut(s) 623, 694, 827, 1311
Tru1I TTAA 2 cut(s) 753, 1355
Tru9I TTAA 2 cut(s) 753, 1355
TscAI CASTG 6 cut(s) 75, 622, 891, 916, 1086, 1132
TseFI GTSAC 3 cut(s) 613, 1127, 1327
TseI GCWGC 3 cut(s) 597, 914, 917
Tsp45I GTSAC 3 cut(s) 613, 1127, 1327
TspDTI ATGAA 8 cut(s) 49, 435, 482, 587, 615, 819, 858, 1266
TspGWI ACGGA 2 cut(s) 137, 649
TspRI CASTG 6 cut(s) 75, 622, 891, 916, 1086, 1132
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 1292
XapI RAATTY 3 cut(s) 104, 494, 563
XceI RCATGY 3 cut(s) 604, 1172, 1305
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XmnI GAANNNNTTC 2 cut(s) 263, 849
XspI CTAG 3 cut(s) 530, 1395, 1422
ZraI GACGTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.