Rh2AG332800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004522
Physical Location & Seq
Reverse (-)
48104136 .. 48115054
10919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG332800.1

Sequence Viewer

Length: 966 bp
ATGCTGTGTCAGAAACTGAAGAAACTAGAACAAGGTGGGAAAAGCTTTTCGGTGCTTGACTTCAGTATGAGGATGACATTTGATGCGATGTGCTGCATGCTAATGAGTGTCACGGATGAGCCCTTGCTAAGGCAGCTTGAGAAAGACTGCACTGCAGTCTCGGATGGAATCTTATCTGTTCCTGTCATGATTCCAGGCACTAGATATTACAAAGGCATCAAGGCACGCAGACGTCTCATGGAAACCTTTAAAGACATGATTGCCAGAAGAAGGAGTGGGAAGGAGTGGCCAGAACCAGAAGATTTCCTACAGTCCATGTTGCGAAGAGACTCATACCCTCCCAATGAAAAGCTGCAAGACTCAGAAATCATGGACAACCTAATGACACTTATAATTGCAGGGCAGACGACCACTTCTGCTGCAATGATGTGGAGTGTCAAGTTTCTGGATGAGAACCAACAAGTCCAAGACATTCTTAGGGAGGAACAACTGTCGATAGCCACATCCAAGCCCGAAGGAGCATCAATTACCCTCGAAGATATTAATAATATGTCCTACTGTTGGAAGGTTGTTAAAGAAACAGTAAGGATGTCAACTGTGGTTATGTGGTATCCTCGAGTTGCACTCAGTGACTGTACTATAGAAGGTTTTGAGATAAAGAAAGGGTGGCATGTGAACATTGACGCGACATGCATACACAACGACCCAGATTTGTACCCAGACCCTTCCAAATTCAACCCTTCTAGATTTGATGAAATGCAAAAGCCATATAGTTTCATACCATTTGGGTCAGGACCCAGGACATGCTTGGGAATCAATATGGCCAAGATGACCATGATGGTCTTTCTTCACCGTCTCACTACTGCATACAGGTGGACAGTCGATAATCTTGATACCAGTCTAGAAAAGAAGGCCCATATTCCTAGACTAAGAAGTGGTTGTCCCATTACCTTGACGGCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

321

Amino Acids

36.85

Weight (kDa)

7.51

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 299 1.2e-59 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AatII GACGTC 1 cut(s) 235
AccII CGCG 1 cut(s) 686
AcoI YGGCCR 2 cut(s) 287, 822
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 2 cut(s) 38, 46
AcyI GRCGYC 1 cut(s) 232
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 2 cut(s) 637, 716
AfiI CCNNNNNNNGG 3 cut(s) 129, 270, 561
AgsI TTSAA 1 cut(s) 736
AjnI CCWGG 2 cut(s) 193, 797
AluBI AGCT 3 cut(s) 45, 136, 352
AluI AGCT 3 cut(s) 45, 136, 352
Alw26I GTCTC 4 cut(s) 163, 239, 321, 860
AlwNI CAGNNNCTG 2 cut(s) 16, 633
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 4 cut(s) 287, 822, 912, 957
ApeKI GCWGC 4 cut(s) 93, 133, 352, 419
ApoI RAATTY 1 cut(s) 731
AseI ATTAAT 1 cut(s) 543
AspS9I GGNCC 2 cut(s) 794, 913
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 794
BalI TGGCCA 2 cut(s) 289, 824
BanII GRGCYC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbvI GCAGC 4 cut(s) 80, 145, 339, 406
BccI CCATC 2 cut(s) 158, 832
BciT130I CCWGG 2 cut(s) 195, 799
BciVI GTATCC 1 cut(s) 621
BcoDI GTCTC 4 cut(s) 163, 239, 321, 860
BfaI CTAG 5 cut(s) 26, 201, 744, 902, 924
BfmI CTRYAG 3 cut(s) 153, 308, 639
BfuI GTATCC 1 cut(s) 621
BisI GCNGC 4 cut(s) 94, 134, 353, 420
BlsI GCNGC 4 cut(s) 95, 135, 354, 421
Bme1390I CCNGG 2 cut(s) 195, 799
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 794, 913
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 2 cut(s) 195, 799
BmsI GCATC 3 cut(s) 73, 225, 530
BplI GAGNNNNNCTC 2 cut(s) 609, 641
Bpu10I CCTNAGC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 797
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 270, 561
Bse1I ACTGG 1 cut(s) 897
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 2 cut(s) 195, 799
BseDI CCNNGG 1 cut(s) 797
BseGI GGATG 6 cut(s) 78, 121, 169, 454, 503, 594
BseLI CCNNNNNNNGG 3 cut(s) 129, 270, 561
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 375, 640
BseNI ACTGG 1 cut(s) 897
BseXI GCAGC 4 cut(s) 80, 145, 339, 406
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 686
BshFI GGCC 4 cut(s) 289, 824, 914, 959
BsiHKCI CYCGRG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 3 cut(s) 129, 270, 561
BsmAI GTCTC 4 cut(s) 163, 239, 321, 860
BsmBI CGTCTC 2 cut(s) 239, 860
BsmFI GGGAC 1 cut(s) 927
BsnI GGCC 4 cut(s) 289, 824, 914, 959
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 1 cut(s) 123
BspANI GGCC 4 cut(s) 289, 824, 914, 959
BspCNI CTCAG 2 cut(s) 374, 639
BspFNI CGCG 1 cut(s) 686
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 796
BspMAI CTGCAG 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 897
BssECI CCNNGG 1 cut(s) 797
BssNI GRCGYC 1 cut(s) 232
Bst2UI CCWGG 2 cut(s) 195, 799
Bst4CI ACNGT 8 cut(s) 312, 492, 560, 583, 598, 635, 854, 880
Bst6I CTCTTC 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 98, 226
BstDEI CTNAG 5 cut(s) 128, 361, 476, 626, 929
BstENI CCTNNNNNAGG 1 cut(s) 127
BstF5I GGATG 6 cut(s) 78, 121, 169, 454, 503, 594
BstFNI CGCG 1 cut(s) 686
BstMAI GTCTC 4 cut(s) 163, 239, 321, 860
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 2 cut(s) 195, 799
BstNSI RCATGY 4 cut(s) 100, 674, 693, 807
BstSCI CCNGG 2 cut(s) 193, 797
BstSFI CTRYAG 3 cut(s) 153, 308, 639
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 4 cut(s) 80, 145, 339, 406
BsuI GTATCC 1 cut(s) 621
BsuRI GGCC 4 cut(s) 289, 824, 914, 959
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 6 cut(s) 78, 121, 169, 454, 503, 594
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 634
Cac8I GCNNGC 2 cut(s) 98, 226
CaiI CAGNNNCTG 2 cut(s) 16, 633
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 794, 913
CseI GACGC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 636, 715
CviQI GTAC 2 cut(s) 636, 715
DdeI CTNAG 5 cut(s) 128, 361, 476, 626, 929
DraI TTTAAA 1 cut(s) 250
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 2 cut(s) 287, 822
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 2 cut(s) 38, 46
Eco88I CYCGRG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 193, 797
EcoT22I ATGCAT 1 cut(s) 695
EcoT38I GRGCYC 1 cut(s) 123
Esp3I CGTCTC 2 cut(s) 239, 860
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 927
Fnu4HI GCNGC 4 cut(s) 94, 134, 353, 420
FokI GGATG 6 cut(s) 85, 128, 176, 461, 490, 601
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 94, 134, 353, 420
FspBI CTAG 5 cut(s) 26, 201, 744, 902, 924
GluI GCNGC 4 cut(s) 94, 134, 353, 420
HaeIII GGCC 4 cut(s) 289, 824, 914, 959
HgaI GACGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 5 cut(s) 168, 190, 329, 359, 813
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 594, 676, 876
Hpy188I TCNGA 3 cut(s) 12, 163, 364
Hpy188III TCNNGA 6 cut(s) 187, 446, 744, 792, 890, 902
Hpy8I GTNNAC 3 cut(s) 594, 676, 876
HpyAV CCTTC 8 cut(s) 264, 274, 509, 559, 638, 735, 750, 904
HpyCH4III ACNGT 8 cut(s) 312, 492, 560, 583, 598, 635, 854, 880
HpyCH4IV ACGT 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 5 cut(s) 128, 361, 476, 626, 929
HpySE526I ACGT 1 cut(s) 232
Hsp92I GRCGYC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 4 cut(s) 80, 145, 339, 406
LweI GCATC 3 cut(s) 73, 225, 530
MaeI CTAG 5 cut(s) 26, 201, 744, 902, 924
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 109, 629
MboII GAAGA 6 cut(s) 31, 279, 311, 336, 548, 839
MhlI GDGCHC 1 cut(s) 123
MlsI TGGCCA 2 cut(s) 289, 824
MluCI AATT 3 cut(s) 393, 525, 731
MluNI TGGCCA 2 cut(s) 289, 824
MlyI GAGTC 2 cut(s) 323, 353
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 5 cut(s) 63, 348, 475, 542, 624
Mox20I TGGCCA 2 cut(s) 289, 824
Mph1103I ATGCAT 1 cut(s) 695
MscI TGGCCA 2 cut(s) 289, 824
MseI TTAA 3 cut(s) 249, 543, 573
MslI CAYNNNNRTG 2 cut(s) 101, 871
Msp20I TGGCCA 2 cut(s) 289, 824
MspR9I CCNGG 2 cut(s) 195, 799
MvaI CCWGG 2 cut(s) 195, 799
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 796
NmuCI GTSAC 2 cut(s) 109, 629
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 4 cut(s) 100, 674, 693, 807
PaeI GCATGC 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 615
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 3 cut(s) 168, 190, 813
PkrI GCNGC 4 cut(s) 95, 135, 354, 421
PleI GAGTC 2 cut(s) 323, 353
PpsI GAGTC 2 cut(s) 323, 353
PpuMI RGGWCCY 1 cut(s) 794
PshBI ATTAAT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 193, 797
PspGI CCWGG 2 cut(s) 193, 797
PspN4I GGNNCC 1 cut(s) 796
PspPI GGNCC 2 cut(s) 794, 913
PspPPI RGGWCCY 1 cut(s) 794
PspXI VCTCGAGB 1 cut(s) 615
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 2 cut(s) 16, 633
RsaI GTAC 2 cut(s) 637, 716
RsaNI GTAC 2 cut(s) 636, 715
RseI CAYNNNNRTG 2 cut(s) 101, 871
SaqAI TTAA 3 cut(s) 249, 543, 573
SatI GCNGC 4 cut(s) 94, 134, 353, 420
Sau96I GGNCC 2 cut(s) 794, 913
SchI GAGTC 2 cut(s) 323, 353
ScrFI CCNGG 2 cut(s) 195, 799
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 3 cut(s) 73, 225, 530
SfcI CTRYAG 3 cut(s) 153, 308, 639
Sfr274I CTCGAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 615
SmiMI CAYNNNNRTG 2 cut(s) 101, 871
SmlI CTYRAG 2 cut(s) 137, 615
SmoI CTYRAG 2 cut(s) 137, 615
SphI GCATGC 1 cut(s) 100
Sse9I AATT 3 cut(s) 393, 525, 731
SspMI CTAG 5 cut(s) 26, 201, 744, 902, 924
StyD4I CCNGG 2 cut(s) 193, 797
TaaI ACNGT 8 cut(s) 312, 492, 560, 583, 598, 635, 854, 880
TaiI ACGT 1 cut(s) 235
TaqI TCGA 4 cut(s) 494, 534, 616, 882
TasI AATT 3 cut(s) 393, 525, 731
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 3 cut(s) 168, 190, 813
Tru1I TTAA 3 cut(s) 249, 543, 573
Tru9I TTAA 3 cut(s) 249, 543, 573
TscAI CASTG 2 cut(s) 157, 634
TseFI GTSAC 2 cut(s) 109, 629
TseI GCWGC 4 cut(s) 93, 133, 352, 419
Tsp45I GTSAC 2 cut(s) 109, 629
TspDTI ATGAA 3 cut(s) 360, 766, 768
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 157, 634
VpaK11BI GGWCC 1 cut(s) 794
VspI ATTAAT 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 127
XapI RAATTY 1 cut(s) 731
XbaI TCTAGA 2 cut(s) 743, 901
XceI RCATGY 4 cut(s) 100, 674, 693, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XhoI CTCGAG 1 cut(s) 615
XspI CTAG 5 cut(s) 26, 201, 744, 902, 924
ZraI GACGTC 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.