FvH4_1g13310

Protein N-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012035
Physical Location & Seq
Forward (+)
7297663 .. 7298484
822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13310.t1

Sequence Viewer

Length: 822 bp
ATGGCCGCTATAGAAGTAGAAGACGAAGACGACGTTGTTATAAACCCCGCCACCATGCTCCTCCGCGACGACTCCGACGAAGTCAAGACGGCGGAGACCGAACAGCTCCGCCAGCATTCTCTTCCTTCGATCGGCTCAACAATCGTCACCAGGCAGCTCCCTTCGCAAGGTCTCTCCTTCCAGCTCTGGCCGGCCGCCACCACGCTCCTCACTCTCCTCGACGACCACCGCCGCGACCCTACTGCCAGCCCTCTGGGTCCCACAATCTCGGCCTTGGAATCCGGCCGGAGACTCAAGATCCTCGAACTCGGCTCCGGGACCGGCCTCGTCGGAATAGCCGCCGCCGCGACGCTCGGCGCGTGCGTCACCGTCACGGACCTGCCGCACGTGACGGACAACCTGAGGTACAATGTGGAGCTGAACGCCGCCGTTTTGGGAGGAAGCGGCGGGAGTGTGACCGTGGCGGCGCTGAGGTGGGGAGAGGCGGAGGACGCGGAGGCGATAGGGCGGGAGTTTGATCTTGTTTTGGCCTCGGACGTGGTGTATCATGACCATCTCTACGAGCCGCTGCTCAAAACGCTGTCGTTTCTGCTGTTGGGGGAGGGCGGCGTGGTGTTTGTGATGGCCCACTTGAGGAGGTGGAAGAAGGACTCGGCCTTCTTCAAGAGGGCGAGGAAGGTTTTTGAGGTTGAGGTGTTGCACGTGGATCGTCCGTGCGAGGGAACCAGGACCGGAGTTACTGTTTACCGTTTTACCAGGAAGCCAAGTAAGAAAGTGTTCAAAGAAGTCTCAGTGGTGAACAATGTCAATGGGATTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

274

Amino Acids

29.71

Weight (kDa)

5.55

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 55 - 225 1.8e-32 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50850 AT5G49560
fragaria_vesca FvH4_1g13310
malus_domestica MD02G1147500.v1.1 MD15G1261800.v1.1
prunus_persica Prupe.7G154600_v2.0.a1
pyrus_communis pycom15g22900
rosa_chinensis RchiOBHm_Chr2g0101571
rosa_laevigata RLG00000017091
rosa_multiflora Rmu_co8339275.1_g000001 Rmu_sc0006153.1_g000007 Rmu_sc0019613.1_g000002
rosa_roxburghii Rroxscaffold_2G00141180
rosa_rugosa Rorug02G0097300
rosa_samantha Rh2AG148100 Rh2BG153500 Rh2CG154000 Rh2DG153800
rosa_wichuraiana Rw2G011550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 387
AccII CGCG 5 cut(s) 66, 234, 347, 359, 494
AclWI GGATC 2 cut(s) 292, 714
AcoI YGGCCR 4 cut(s) 3, 188, 192, 283
AcvI CACGTG 2 cut(s) 388, 703
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 4 cut(s) 131, 167, 633, 719
AgsI TTSAA 2 cut(s) 664, 781
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 149, 725, 755
AluBI AGCT 4 cut(s) 106, 157, 184, 418
AluI AGCT 4 cut(s) 106, 157, 184, 418
Alw26I GTCTC 4 cut(s) 89, 176, 283, 793
AlwI GGATC 2 cut(s) 292, 714
AoxI GGCC 9 cut(s) 3, 188, 192, 270, 283, 322, 528, 624, 654
ApeKI GCWGC 2 cut(s) 154, 568
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 2 cut(s) 359, 469
AspS9I GGNCC 5 cut(s) 257, 318, 376, 625, 729
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 139, 358, 808
AvaII GGWCC 4 cut(s) 257, 318, 376, 729
AxyI CCTNAGG 1 cut(s) 401
BbrPI CACGTG 2 cut(s) 388, 703
BbsI GAAGAC 2 cut(s) 27, 33
BbvCI CCTCAGC 1 cut(s) 470
BbvI GCAGC 2 cut(s) 166, 555
BccI CCATC 2 cut(s) 561, 616
BceAI ACGGC 2 cut(s) 105, 413
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 689, 723
BciT130I CCWGG 3 cut(s) 151, 727, 757
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 89, 176, 283, 793
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 387
Bme1390I CCNGG 4 cut(s) 151, 316, 727, 757
Bme18I GGWCC 4 cut(s) 257, 318, 376, 729
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 5 cut(s) 257, 318, 376, 625, 729
BmiI GGNNCC 5 cut(s) 258, 259, 313, 319, 724
BmrFI CCNGG 4 cut(s) 151, 316, 727, 757
BpiI GAAGAC 2 cut(s) 27, 33
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 278, 652
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 2 cut(s) 388, 703
BsaI GGTCTC 2 cut(s) 89, 176
BsaJI CCNNGG 3 cut(s) 273, 459, 531
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 167, 633, 719
Bse118I RCCGGY 2 cut(s) 190, 320
Bse21I CCTNAGG 1 cut(s) 401
BseBI CCWGG 3 cut(s) 151, 727, 757
BseDI CCNNGG 3 cut(s) 273, 459, 531
BseLI CCNNNNNNNGG 4 cut(s) 131, 167, 633, 719
BseMII CTCAG 3 cut(s) 392, 461, 804
BseRI GAGGAG 4 cut(s) 50, 197, 206, 649
BseX3I CGGCCG 2 cut(s) 192, 283
BseXI GCAGC 2 cut(s) 166, 555
Bsh1236I CGCG 5 cut(s) 66, 234, 347, 359, 494
Bsh1285I CGRYCG 3 cut(s) 132, 195, 286
BshFI GGCC 9 cut(s) 5, 190, 194, 272, 285, 324, 530, 626, 656
BsiEI CGRYCG 3 cut(s) 132, 195, 286
BsiSI CCGG 6 cut(s) 191, 282, 286, 315, 321, 732
BslFI GGGAC 2 cut(s) 243, 331
BslI CCNNNNNNNGG 4 cut(s) 131, 167, 633, 719
BsmAI GTCTC 4 cut(s) 89, 176, 283, 793
BsmFI GGGAC 2 cut(s) 243, 331
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 9 cut(s) 5, 190, 194, 272, 285, 324, 530, 626, 656
Bso31I GGTCTC 2 cut(s) 89, 176
Bsp143I GATC 4 cut(s) 129, 297, 517, 706
BspANI GGCC 9 cut(s) 5, 190, 194, 272, 285, 324, 530, 626, 656
BspCNI CTCAG 3 cut(s) 393, 462, 803
BspFNI CGCG 5 cut(s) 66, 234, 347, 359, 494
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 258, 259, 313, 319, 724
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 2 cut(s) 292, 714
BspTNI GGTCTC 2 cut(s) 89, 176
BsrFI RCCGGY 2 cut(s) 190, 320
BssAI RCCGGY 2 cut(s) 190, 320
BssECI CCNNGG 3 cut(s) 273, 459, 531
BssMI GATC 4 cut(s) 129, 297, 517, 706
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 151, 727, 757
Bst4CI ACNGT 4 cut(s) 370, 460, 742, 749
Bst6I CTCTTC 1 cut(s) 126
BstBAI YACGTR 2 cut(s) 388, 703
BstC8I GCNNGC 4 cut(s) 113, 192, 247, 361
BstDEI CTNAG 3 cut(s) 401, 470, 790
BstDSI CCRYGG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 165
BstFNI CGCG 5 cut(s) 66, 234, 347, 359, 494
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 2 cut(s) 359, 469
BstKTI GATC 4 cut(s) 132, 300, 520, 709
BstMAI GTCTC 4 cut(s) 89, 176, 283, 793
BstMBI GATC 4 cut(s) 129, 297, 517, 706
BstMCI CGRYCG 3 cut(s) 132, 195, 286
BstMWI GCNNNNNNNGC 5 cut(s) 112, 163, 344, 491, 577
BstNI CCWGG 3 cut(s) 151, 727, 757
BstSCI CCNGG 4 cut(s) 149, 314, 725, 755
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 5 cut(s) 66, 234, 347, 359, 494
BstV1I GCAGC 2 cut(s) 166, 555
BstV2I GAAGAC 2 cut(s) 27, 33
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 297
BstZI CGGCCG 2 cut(s) 192, 283
Bsu36I CCTNAGG 1 cut(s) 401
BsuRI GGCC 9 cut(s) 5, 190, 194, 272, 285, 324, 530, 626, 656
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 798
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 4 cut(s) 113, 192, 247, 361
CciI TCATGA 1 cut(s) 547
CfoI GCGC 2 cut(s) 359, 469
Cfr10I RCCGGY 2 cut(s) 190, 320
Cfr13I GGNCC 5 cut(s) 257, 318, 376, 625, 729
CseI GACGC 3 cut(s) 352, 358, 500
Csp6I GTAC 1 cut(s) 406
CviAII CATG 2 cut(s) 55, 548
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 401, 470, 790
DpnI GATC 4 cut(s) 131, 299, 519, 708
DpnII GATC 4 cut(s) 129, 297, 517, 706
EaeI YGGCCR 4 cut(s) 3, 188, 192, 283
EagI CGGCCG 2 cut(s) 192, 283
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 3 cut(s) 98, 107, 500
EclXI CGGCCG 2 cut(s) 192, 283
Eco130I CCWWGG 1 cut(s) 273
Eco31I GGTCTC 2 cut(s) 89, 176
Eco47I GGWCC 4 cut(s) 257, 318, 376, 729
Eco52I CGGCCG 2 cut(s) 192, 283
Eco72I CACGTG 2 cut(s) 388, 703
Eco81I CCTNAGG 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 149, 725, 755
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 58, 551
FaiI YATR 4 cut(s) 11, 41, 56, 549
FaqI GGGAC 2 cut(s) 243, 331
FatI CATG 2 cut(s) 54, 547
FauI CCCGC 3 cut(s) 55, 440, 501
FseI GGCCGGCC 1 cut(s) 194
GlaI GCGC 2 cut(s) 358, 468
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 9 cut(s) 5, 190, 194, 272, 285, 324, 530, 626, 656
HapII CCGG 6 cut(s) 191, 282, 286, 315, 321, 732
HgaI GACGC 3 cut(s) 352, 358, 500
HhaI GCGC 2 cut(s) 359, 469
Hin1II CATG 2 cut(s) 58, 551
Hin6I GCGC 2 cut(s) 357, 467
HinP1I GCGC 2 cut(s) 357, 467
HinfI GANTC 5 cut(s) 71, 278, 291, 650, 814
HpaII CCGG 6 cut(s) 191, 282, 286, 315, 321, 732
HphI GGTGA 3 cut(s) 139, 358, 808
Hpy166II GTNNAC 2 cut(s) 745, 799
Hpy188I TCNGA 3 cut(s) 76, 332, 535
Hpy188III TCNNGA 4 cut(s) 85, 295, 548, 664
Hpy8I GTNNAC 2 cut(s) 745, 799
Hpy99I CGWCG 6 cut(s) 35, 71, 80, 224, 332, 352
HpyAV CCTTC 6 cut(s) 135, 171, 187, 640, 667, 670
HpyCH4III ACNGT 4 cut(s) 370, 460, 742, 749
HpyCH4IV ACGT 4 cut(s) 33, 387, 537, 702
HpyCH4V TGCA 1 cut(s) 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 112, 163, 344, 491, 577
HpyF3I CTNAG 3 cut(s) 401, 470, 790
HpySE526I ACGT 4 cut(s) 33, 387, 537, 702
Hsp92II CATG 2 cut(s) 58, 551
HspAI GCGC 2 cut(s) 357, 467
KflI GGGWCCC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Kzo9I GATC 4 cut(s) 129, 297, 517, 706
LmnI GCTCC 6 cut(s) 63, 111, 162, 210, 317, 415
Lsp1109I GCAGC 2 cut(s) 166, 555
MaeII ACGT 4 cut(s) 33, 387, 537, 702
MaeIII GTNAC 6 cut(s) 145, 364, 370, 388, 454, 736
MalI GATC 4 cut(s) 131, 299, 519, 708
MboI GATC 4 cut(s) 129, 297, 517, 706
MboII GAAGA 5 cut(s) 32, 38, 113, 652, 655
MflI RGATCY 1 cut(s) 297
MlyI GAGTC 3 cut(s) 65, 285, 644
MmeI TCCRAC 2 cut(s) 99, 310
MroNI GCCGGC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 6 cut(s) 191, 282, 286, 315, 321, 732
MspR9I CCNGG 4 cut(s) 151, 316, 727, 757
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 3 cut(s) 151, 727, 757
MvnI CGCG 5 cut(s) 66, 234, 347, 359, 494
MwoI GCNNNNNNNGC 5 cut(s) 112, 163, 344, 491, 577
NaeI GCCGGC 1 cut(s) 192
NciI CCSGG 1 cut(s) 316
NdeII GATC 4 cut(s) 129, 297, 517, 706
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 2 cut(s) 58, 551
NlaIV GGNNCC 5 cut(s) 258, 259, 313, 319, 724
NmeAIII GCCGAG 4 cut(s) 248, 288, 333, 632
NmuCI GTSAC 5 cut(s) 145, 364, 370, 388, 454
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 75, 356, 360
PctI GAATGC 1 cut(s) 115
PdiI GCCGGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 2 cut(s) 278, 814
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 314
Ple19I CGATCG 1 cut(s) 132
PleI GAGTC 3 cut(s) 65, 285, 644
PmaCI CACGTG 2 cut(s) 388, 703
PmlI CACGTG 2 cut(s) 388, 703
PpsI GAGTC 3 cut(s) 65, 285, 644
Ppu21I YACGTR 2 cut(s) 388, 703
PpuMI RGGWCCY 1 cut(s) 257
PsiI TTATAA 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 149, 725, 755
PspCI CACGTG 2 cut(s) 388, 703
PspGI CCWGG 3 cut(s) 149, 725, 755
PspN4I GGNNCC 5 cut(s) 258, 259, 313, 319, 724
PspPI GGNCC 5 cut(s) 257, 318, 376, 625, 729
PspPPI RGGWCCY 1 cut(s) 257
PsuI RGATCY 1 cut(s) 297
PsyI GACNNNGTC 1 cut(s) 80
PvuI CGATCG 1 cut(s) 132
RigI GGCCGGCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
Sau3AI GATC 4 cut(s) 129, 297, 517, 706
Sau96I GGNCC 5 cut(s) 257, 318, 376, 625, 729
SchI GAGTC 3 cut(s) 65, 285, 644
ScrFI CCNGG 4 cut(s) 151, 316, 727, 757
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 4 cut(s) 257, 318, 376, 729
SmlI CTYRAG 2 cut(s) 293, 631
SmoI CTYRAG 2 cut(s) 293, 631
StyD4I CCNGG 4 cut(s) 149, 314, 725, 755
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 4 cut(s) 370, 460, 742, 749
TaiI ACGT 4 cut(s) 36, 390, 540, 705
TaqI TCGA 3 cut(s) 128, 219, 303
TaqII GACCGA 1 cut(s) 113
TfiI GAWTC 2 cut(s) 278, 814
TscAI CASTG 1 cut(s) 798
TseFI GTSAC 5 cut(s) 145, 364, 370, 388, 454
TseI GCWGC 2 cut(s) 154, 568
Tsp45I GTSAC 5 cut(s) 145, 364, 370, 388, 454
TspGWI ACGGA 3 cut(s) 389, 407, 702
TspRI CASTG 1 cut(s) 798
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 4 cut(s) 257, 318, 376, 729
XagI CCTNNNNNAGG 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.