Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339275.1

Orthogroup ID

OG0012035

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 979

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

gctgccacgctcggcgcgtgcgtcactgtgacggacctcccgcacgtcgtcgacaaccttaagttcaatgcggaactaaacgccgccgctttgggagggagcggcgggagtgtgagagtggcggcgctgaggtggggagaggcggaggacgcggaggcaatagggcgggagtttgatattgtattggcgtcggatgtagtgtatcacgaccacctctacgagccgctgctcaaaacgctgtcgtttctgctgttgggagagggcggcgtggtgtttgtgatggcccacttgaggaggtggaagaaggagtcggccttcttcaagagggccaggaagctttttgaggttgaggtcttgcacgtggatcgtccgtgccagggatcgagggtcggagttactgtttaccgttttaccgggaagccaagtaagaaattgttgaatggtgtctctgtgaacacttctacccttccccgccttgacagccgacagccgaccaacgaggtttatgctcatattccggtatttgctagccaatcgcagtggaaacgatcctttacccaaattgaatacttcattgcttcctcagtggagatctttcatattttaggagtctctaaagcaacaaaattgcacaattgtcgtcctgtctgggatacacagcaaaaaccacccgtccctatattcttcctgcaacggaagcaccatgctctcgctggtgatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

241

Amino Acids

26.82

Weight (kDa)

9.28

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50850 AT5G49560
fragaria_vesca	FvH4_1g13310
malus_domestica	MD02G1147500.v1.1 MD15G1261800.v1.1
prunus_persica	Prupe.7G154600_v2.0.a1
pyrus_communis	pycom15g22900
rosa_chinensis	RchiOBHm_Chr2g0101571
rosa_laevigata	RLG00000017091
rosa_multiflora	Rmu_co8339275.1_g000001 Rmu_sc0006153.1_g000007 Rmu_sc0019613.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141180
rosa_rugosa	Rorug02G0097300
rosa_samantha	Rh2AG148100 Rh2BG153500 Rh2CG154000 Rh2DG153800
rosa_wichuraiana	Rw2G011550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	2 cut(s)	17, 152
AclWI	GGATC	3 cut(s)	372, 388, 543
AcvI	CACGTG	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	291, 377
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	67, 322, 439, 566
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	329, 375
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	451, 616
AlwI	GGATC	3 cut(s)	372, 388, 543
AoxI	GGCC	3 cut(s)	282, 312, 327
ApeKI	GCWGC	2 cut(s)	2, 226
AspLEI	GCGC	2 cut(s)	17, 127
AspS9I	GGNCC	3 cut(s)	34, 283, 327
AsuC2I	CCSGG	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	274
BcgI	CGANNNNNNTGC	6 cut(s)	347, 381, 488, 522, 620, 654
BciT130I	CCWGG	2 cut(s)	331, 377
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	451, 616
BfaI	CTAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	646
BglII	AGATCT	1 cut(s)	591
BisI	GCNGC	8 cut(s)	3, 84, 87, 103, 123, 224, 227, 265
BlsI	GCNGC	8 cut(s)	4, 85, 88, 104, 124, 225, 228, 266
Bme1390I	CCNGG	3 cut(s)	331, 377, 415
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	3 cut(s)	34, 283, 327
BmrFI	CCNGG	3 cut(s)	331, 377, 415
BmtI	GCTAGC	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 377
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	331, 377
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	291, 377
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	119, 597
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	17, 152
BshFI	GGCC	3 cut(s)	284, 314, 329
BsiSI	CCGG	2 cut(s)	414, 518
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	291, 377
BsmAI	GTCTC	2 cut(s)	451, 616
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	284, 314, 329
Bsp143I	GATC	5 cut(s)	364, 380, 548, 591, 718
BspANI	GGCC	3 cut(s)	284, 314, 329
BspCNI	CTCAG	2 cut(s)	120, 596
BspFNI	CGCG	2 cut(s)	17, 152
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	372, 388, 543
BspTI	CTTAAG	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	573
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	5 cut(s)	364, 380, 548, 591, 718
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	331, 377
Bst4CI	ACNGT	3 cut(s)	28, 400, 407
BstACI	GRCGYC	1 cut(s)	188
BstAFI	CTTAAG	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	19, 529
BstDEI	CTNAG	2 cut(s)	128, 583
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	2 cut(s)	17, 152
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	17, 127
BstKTI	GATC	5 cut(s)	367, 383, 551, 594, 721
BstMAI	GTCTC	2 cut(s)	451, 616
BstMBI	GATC	5 cut(s)	364, 380, 548, 591, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 235, 480, 697
BstNI	CCWGG	2 cut(s)	331, 377
BstSCI	CCNGG	3 cut(s)	329, 375, 413
BstUI	CGCG	2 cut(s)	17, 152
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	284, 314, 329
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	24, 545, 591
Cac8I	GCNNGC	2 cut(s)	19, 529
CfoI	GCGC	2 cut(s)	17, 127
Cfr13I	GGNCC	3 cut(s)	34, 283, 327
CseI	GACGC	3 cut(s)	10, 158, 177
CspCI	CAANNNNNGTGG	2 cut(s)	521, 556
CviAII	CATG	1 cut(s)	704
CviJI	RGCY	9 cut(s)	223, 284, 314, 329, 337, 421, 483, 490, 531
CviKI_1	RGCY	9 cut(s)	223, 284, 314, 329, 337, 421, 483, 490, 531
DdeI	CTNAG	2 cut(s)	128, 583
DpnI	GATC	5 cut(s)	366, 382, 550, 593, 720
DpnII	GATC	5 cut(s)	364, 380, 548, 591, 718
EciI	GGCGGA	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	329, 375
FaeI	CATG	1 cut(s)	707
FaiI	YATR	5 cut(s)	507, 513, 600, 680, 705
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	1 cut(s)	703
FauI	CCCGC	4 cut(s)	48, 98, 159, 479
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	8 cut(s)	3, 84, 87, 103, 123, 224, 227, 265
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	8 cut(s)	3, 84, 87, 103, 123, 224, 227, 265
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	16, 126
GluI	GCNGC	8 cut(s)	3, 84, 87, 103, 123, 224, 227, 265
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	284, 314, 329
HapII	CCGG	2 cut(s)	414, 518
HgaI	GACGC	3 cut(s)	10, 158, 177
HhaI	GCGC	2 cut(s)	17, 127
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	707
Hin6I	GCGC	2 cut(s)	15, 125
HinP1I	GCGC	2 cut(s)	15, 125
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	308, 609
HpaII	CCGG	2 cut(s)	414, 518
Hpy166II	GTNNAC	3 cut(s)	52, 403, 454
Hpy188I	TCNGA	2 cut(s)	193, 392
Hpy188III	TCNNGA	2 cut(s)	206, 322
Hpy8I	GTNNAC	3 cut(s)	52, 403, 454
Hpy99I	CGWCG	3 cut(s)	50, 53, 193
HpyAV	CCTTC	3 cut(s)	298, 325, 476
HpyCH4III	ACNGT	3 cut(s)	28, 400, 407
HpyCH4IV	ACGT	2 cut(s)	45, 360
HpyCH4V	TGCA	3 cut(s)	358, 631, 691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 235, 480, 697
HpyF3I	CTNAG	2 cut(s)	128, 583
HpySE526I	ACGT	2 cut(s)	45, 360
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	707
HspAI	GCGC	2 cut(s)	15, 125
Kzo9I	GATC	5 cut(s)	364, 380, 548, 591, 718
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	45, 360
MaeIII	GTNAC	3 cut(s)	22, 28, 394
MalI	GATC	5 cut(s)	366, 382, 550, 593, 720
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	5 cut(s)	364, 380, 548, 591, 718
MboII	GAAGA	3 cut(s)	310, 313, 676
MfeI	CAATTG	1 cut(s)	634
MflI	RGATCY	1 cut(s)	591
MluCI	AATT	4 cut(s)	431, 561, 626, 634
MlyI	GAGTC	2 cut(s)	317, 618
MmeI	TCCRAC	2 cut(s)	171, 370
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	226
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	2 cut(s)	414, 518
MspR9I	CCNGG	3 cut(s)	331, 377, 415
MunI	CAATTG	1 cut(s)	634
MvaI	CCWGG	2 cut(s)	331, 377
MvnI	CGCG	2 cut(s)	17, 152
MwoI	GCNNNNNNNGC	4 cut(s)	149, 235, 480, 697
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	5 cut(s)	364, 380, 548, 591, 718
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	1 cut(s)	707
NmuCI	GTSAC	2 cut(s)	22, 28
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 18
PkrI	GCNGC	8 cut(s)	4, 85, 88, 104, 124, 225, 228, 266
PleI	GAGTC	2 cut(s)	316, 617
PmaCI	CACGTG	1 cut(s)	361
PmlI	CACGTG	1 cut(s)	361
PpsI	GAGTC	2 cut(s)	316, 617
Ppu21I	YACGTR	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	329, 375
PspCI	CACGTG	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	329, 375
PspPI	GGNCC	3 cut(s)	34, 283, 327
PsuI	RGATCY	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	8 cut(s)	3, 84, 87, 103, 123, 224, 227, 265
Sau3AI	GATC	5 cut(s)	364, 380, 548, 591, 718
Sau96I	GGNCC	3 cut(s)	34, 283, 327
SchI	GAGTC	2 cut(s)	317, 618
ScrFI	CCNGG	3 cut(s)	331, 377, 415
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	59, 289
SmoI	CTYRAG	2 cut(s)	59, 289
Sse9I	AATT	4 cut(s)	431, 561, 626, 634
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	3 cut(s)	329, 375, 413
TaaI	ACNGT	3 cut(s)	28, 400, 407
TaiI	ACGT	2 cut(s)	48, 363
TaqI	TCGA	2 cut(s)	51, 383
TasI	AATT	4 cut(s)	431, 561, 626, 634
TauI	GCSGC	6 cut(s)	86, 89, 105, 125, 226, 267
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	3 cut(s)	31, 545, 591
TseFI	GTSAC	2 cut(s)	22, 28
TseI	GCWGC	2 cut(s)	2, 226
Tsp45I	GTSAC	2 cut(s)	22, 28
TspDTI	ATGAA	2 cut(s)	562, 587
TspGWI	ACGGA	3 cut(s)	47, 360, 709
TspRI	CASTG	3 cut(s)	31, 545, 591
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.