Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

7339225 .. 7339712

Gene Structure 488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATTAATGCAATCAGATCGATAAGAAAGCAGTCAACATCTTTGCCGATCACACCGTCTCTGCGTTCATCAAGTTACTTAGGTCAGAAAGCCTCACGGGTCGGATTCAGGCAGGCCTCCGCCACAACTAAGTCAACTGAGCCGGAAAGCGATCCCGAAATGGACGAGAATGCAGCTCATAACCCACACATTAAATCTGGGGACTTGATGTCTCATTCGTTTGGGGAGGGGTACGCGACGCGGTGCGAGGATGATGGATTTGGAGGGATATATGGGGGAAACCAGACGGTTGCCAAAGCTGATCAAGAACAACTCATCCATGAGAACCACCATGCTTATGATAAGACTCAGGGAAGTGAGGTTAAGGAGAAGGAGAAAGCTCGACACCAGATGGAGCCCAAAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

6.37

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	236, 241
AciI	CCGC	2 cut(s)	120, 241
AclWI	GGATC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	233
AhdI	GACNNNNNGTC	1 cut(s)	208
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	176, 299, 380
AluI	AGCT	3 cut(s)	176, 299, 380
Alw26I	GTCTC	2 cut(s)	63, 216
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	173
AseI	ATTAAT	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	2 cut(s)	248, 385
BcgI	CGANNNNNNTGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	63, 216
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	20
BseGI	GGATG	2 cut(s)	256, 315
BseMII	CTCAG	2 cut(s)	129, 362
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	2 cut(s)	236, 241
BshFI	GGCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	63, 216
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	17, 48, 151, 301
BspACI	CCGC	2 cut(s)	120, 241
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	130, 361
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	2 cut(s)	236, 241
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	146
BssMI	GATC	4 cut(s)	17, 48, 151, 301
Bst4CI	ACNGT	2 cut(s)	57, 289
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	4 cut(s)	79, 129, 138, 348
BstF5I	GGATG	2 cut(s)	256, 315
BstFNI	CGCG	2 cut(s)	236, 241
BstKTI	GATC	4 cut(s)	20, 51, 154, 304
BstMAI	GTCTC	2 cut(s)	63, 216
BstMBI	GATC	4 cut(s)	17, 48, 151, 301
BstUI	CGCG	2 cut(s)	236, 241
BstV1I	GCAGC	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	256, 315
Cac8I	GCNNGC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	320, 332
CviJI	RGCY	7 cut(s)	92, 116, 142, 176, 299, 380, 397
CviKI_1	RGCY	7 cut(s)	92, 116, 142, 176, 299, 380, 397
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	4 cut(s)	79, 129, 138, 348
DpnI	GATC	4 cut(s)	19, 50, 153, 303
DpnII	GATC	4 cut(s)	17, 48, 151, 301
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	323, 335
FaiI	YATR	6 cut(s)	180, 271, 273, 321, 333, 339
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	319, 331
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	263, 302
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	323, 335
HincII	GTYRAC	2 cut(s)	36, 135
HindII	GTYRAC	2 cut(s)	36, 135
HinfI	GANTC	2 cut(s)	105, 346
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	36, 135
Hpy188I	TCNGA	3 cut(s)	17, 87, 104
Hpy188III	TCNNGA	2 cut(s)	155, 305
Hpy8I	GTNNAC	2 cut(s)	36, 135
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	57, 289
HpyCH4V	TGCA	2 cut(s)	11, 173
HpyF3I	CTNAG	4 cut(s)	79, 129, 138, 348
Hsp92II	CATG	2 cut(s)	323, 335
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	17, 48, 151, 301
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	7 cut(s)	94, 98, 156, 183, 296, 335, 401
Lsp1109I	GCAGC	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	4 cut(s)	19, 50, 153, 303
MboI	GATC	4 cut(s)	17, 48, 151, 301
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	103, 127, 220, 241, 257, 352
MseI	TTAA	3 cut(s)	6, 192, 363
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	2 cut(s)	236, 241
NdeII	GATC	4 cut(s)	17, 48, 151, 301
NlaIII	CATG	2 cut(s)	323, 335
NlaIV	GGNNCC	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	116
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	396
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	6, 192, 363
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	17, 48, 151, 301
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	5 cut(s)	85, 178, 301, 363, 382
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	406
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	120, 241
StuI	AGGCCT	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	57, 289
TaqI	TCGA	2 cut(s)	20, 382
TasI	AATT	1 cut(s)	406
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	6, 192, 363
Tru9I	TTAA	3 cut(s)	6, 192, 363
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.