Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

8261373 .. 8262402

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGAAGATGATCACCGCGATCAGATTAATTAGACCACAACCGCCAGGTTTGATATTCACGCCGCCGCTGCCGTCAAACTTTGGCCGGAAAGCTACCGGAGTCCGATTCAAGCAGGCTGCAAGTGTTCACGTTTCTAGTGAGAACAGTAACATGGATAAGCAGCAGGAGGAACCTACTCTGAAAACTGGAGACATTTTGTTGGAGTCTTTCGGGGTCGGGTATGCATCGAGGTGCGAGGACGAAGGATTTGGTGGGATATACGGGGCTAAAACGGAGCAGGCTCAGCTGATCCATGACGACCATCCGGCCAACGACAAGTCGCAGGGAAGTGAAGTGAAGGAGAAGGAGAAAGCCCGACACAAGACGAGTGCCTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.87

Weight (kDa)

7.88

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	18, 44, 65, 68
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	85, 309
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	95, 289
AluI	AGCT	2 cut(s)	95, 289
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	85, 309
ApeKI	GCWGC	3 cut(s)	70, 119, 163
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AseI	ATTAAT	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	7
BbvI	GCAGC	3 cut(s)	57, 106, 175
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	5 cut(s)	65, 68, 71, 120, 164
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	5 cut(s)	66, 69, 72, 121, 165
Bme1390I	CCNGG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	3 cut(s)	57, 106, 175
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	87, 311
BsiSI	CCGG	3 cut(s)	88, 99, 308
BsmAI	GTCTC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	87, 311
Bsp143I	GATC	3 cut(s)	12, 21, 291
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	4 cut(s)	18, 44, 65, 68
BspANI	GGCC	2 cut(s)	87, 311
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	12, 21, 291
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	117, 282
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	15, 24, 294
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	12, 21, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 286
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	57, 106, 175
BsuRI	GGCC	2 cut(s)	87, 311
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	117, 282
CviAII	CATG	2 cut(s)	154, 296
CviJI	RGCY	8 cut(s)	87, 95, 119, 269, 284, 289, 311, 356
CviKI_1	RGCY	8 cut(s)	87, 95, 119, 269, 284, 289, 311, 356
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	14, 23, 293
DpnII	GATC	3 cut(s)	12, 21, 291
EaeI	YGGCCR	2 cut(s)	85, 309
EcoRII	CCWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	229
FaeI	CATG	2 cut(s)	157, 299
FaiI	YATR	5 cut(s)	155, 225, 262, 297, 382
FatI	CATG	2 cut(s)	153, 295
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	65, 68, 71, 120, 164
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	65, 68, 71, 120, 164
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	5 cut(s)	65, 68, 71, 120, 164
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	87, 311
HapII	CCGG	3 cut(s)	88, 99, 308
Hin1II	CATG	2 cut(s)	157, 299
HinfI	GANTC	3 cut(s)	102, 108, 206
HpaII	CCGG	3 cut(s)	88, 99, 308
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	26, 107, 183
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	239, 334, 340
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	4, 122, 227, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 286
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	157, 299
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 21, 291
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	3 cut(s)	57, 106, 175
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	14, 23, 293
MboI	GATC	3 cut(s)	12, 21, 291
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	111, 215
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	163, 225, 232
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	232
MspA1I	CMGCKG	2 cut(s)	70, 289
MspI	CCGG	3 cut(s)	88, 99, 308
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	70, 286
NdeII	GATC	3 cut(s)	12, 21, 291
NlaIII	CATG	2 cut(s)	157, 299
NlaIV	GGNNCC	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	66, 69, 72, 121, 165
PleI	GAGTC	2 cut(s)	110, 214
PpsI	GAGTC	2 cut(s)	110, 214
PshBI	ATTAAT	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	5 cut(s)	65, 68, 71, 120, 164
Sau3AI	GATC	3 cut(s)	12, 21, 291
SchI	GAGTC	2 cut(s)	111, 215
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	6 cut(s)	52, 97, 135, 178, 236, 291
SfaNI	GCATC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	4 cut(s)	18, 44, 65, 68
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	30
TauI	GCSGC	2 cut(s)	67, 70
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseI	GCWGC	3 cut(s)	70, 119, 163
TspGWI	ACGGA	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	29
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.