Rorug02G0101700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004400
Physical Location & Seq
Reverse (-)
8631595 .. 8632095
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0101700.1

Sequence Viewer

Length: 501 bp
ATGGCTCTCATTGTTTCAGAGAAACCTCTTGACATAGGAATGTCGGCCATCACCATCATGCTCGGGATTTGGCAGTATATATGTATGGCGTTGGGGAGCCAGGGCACAATCGGGGGTGGTTATCCAAATCGGGGGTTTGAATATGCAGCGGAGCACGCAATCAACCGGGAGAACAGTTACCCAATCATCGGTAGGAACCAACCATGCAAAGGCAAATTGGAAAGAAATCCTTATGTGCAGATAAGTGGTTACATGAAAATACCACCAAATAATGAAAAATATTGTGTTAAGGCTTTTGTGGCTGAACAGCCGACTGTAGCCGGAATGGAGGTCGCCGAGACATTTTACATTGATTACAAATATGGTATCTACACCGATAAAAATAGAGAATGTGGAATATTACCGATGGATAACCGTACCTACCATGCTGTTACAATCGTAGGGAATAGGACAGAAGATGACACAAACTACTGGTTAGTGAAGAATTCTTTGAGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.75

Weight (kDa)

6.72

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 38 - 163 2.5e-20 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 3 cut(s) 131, 188, 209
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 99
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 158
BccI CCATC 3 cut(s) 56, 62, 400
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 101, 167
BmeT110I CYCGRG 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 98, 197
BmrFI CCNGG 2 cut(s) 101, 167
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 188, 209
Bse1I ACTGG 1 cut(s) 476
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 131, 188, 209
BseNI ACTGG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 166, 321
BslI CCNNNNNNNGG 3 cut(s) 131, 188, 209
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 107, 156
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 98, 197
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 176, 316, 416
BstC8I GCNNGC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 155, 299
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 99, 165
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 417
CviAII CATG 4 cut(s) 58, 204, 253, 425
CviJI RGCY 8 cut(s) 5, 47, 99, 293, 302, 310, 320, 496
CviKI_1 RGCY 8 cut(s) 5, 47, 99, 293, 302, 310, 320, 496
CviQI GTAC 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 61, 207, 256, 428
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FatI CATG 4 cut(s) 57, 203, 252, 424
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 166, 321
Hin1II CATG 4 cut(s) 61, 207, 256, 428
HpaII CCGG 2 cut(s) 166, 321
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 19, 500
Hpy188III TCNNGA 2 cut(s) 29, 64
HpyCH4III ACNGT 3 cut(s) 176, 316, 416
HpyCH4V TGCA 3 cut(s) 146, 207, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 299
Hsp92II CATG 4 cut(s) 61, 207, 256, 428
LmnI GCTCC 2 cut(s) 96, 151
LpnPI CCDG 5 cut(s) 86, 113, 179, 334, 457
Lsp1109I GCAGC 1 cut(s) 158
MaeIII GTNAC 3 cut(s) 176, 248, 430
MboII GAAGA 2 cut(s) 467, 493
MhlI GDGCHC 2 cut(s) 107, 156
MluCI AATT 2 cut(s) 215, 484
MnlI CCTC 3 cut(s) 36, 322, 486
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 2 cut(s) 38, 56
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 166, 321
MspR9I CCNGG 2 cut(s) 101, 167
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 155, 299
NciI CCSGG 1 cut(s) 167
NlaIII CATG 4 cut(s) 61, 207, 256, 428
NlaIV GGNNCC 2 cut(s) 98, 197
NmeAIII GCCGAG 1 cut(s) 361
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 98, 197
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 38, 56
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 101, 167
SduI GDGCHC 2 cut(s) 107, 156
SetI ASST 3 cut(s) 28, 333, 422
SfcI CTRYAG 1 cut(s) 315
SmiMI CAYNNNNRTG 2 cut(s) 38, 56
Sse9I AATT 2 cut(s) 215, 484
SsiI CCGC 1 cut(s) 149
SspI AATATT 2 cut(s) 281, 399
StyD4I CCNGG 2 cut(s) 99, 165
TaaI ACNGT 3 cut(s) 176, 316, 416
TasI AATT 2 cut(s) 215, 484
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 269, 288
XapI RAATTY 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.