Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

12927298 .. 12928197

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGAAGATGATTCATGCAATCAGATCAGTGATCAGAAACCAGGCACCGTCAAACTTAGACTGGAAAGCTTCTAGGGTCGGGTTCATCAGGCAGGCCACAAGAACTGTGTCCAGTGATCCGGGTAGTAAACACAACATGGACAAGGCAGAGAACCCAAATCAGCAGGCCGGGACTGGGGACGTGATGTCTCATTCATTTGGGGAGGGGTATGCGAGTCGCTCCGATGAAGAAGGATTTGGAGGAGTGTATAGCGATAACCAGAAGCTTCCTAACAAGATTGAGCAGGATCAGCTCATCCATGAAAACAACCCTGCTTATGACAAGACTCAGGGAAGTGACGTCAAGGAGAAGGAGAGAGCTCGTCACCAACCCAGTTCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.29

Weight (kDa)

7.03

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	113, 297
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	177
AhdI	GACNNNNNGTC	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	4 cut(s)	71, 268, 295, 362
AluI	AGCT	4 cut(s)	71, 268, 295, 362
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	113, 297
AoxI	GGCC	2 cut(s)	96, 168
AsuC2I	CCSGG	2 cut(s)	123, 172
AsuHPI	GGTGA	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	123, 172
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	75
Bme1390I	CCNGG	3 cut(s)	44, 123, 172
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	44, 123, 172
BmrI	ACTGGG	2 cut(s)	186, 369
BmuI	ACTGGG	2 cut(s)	186, 369
BpuMI	CCSGG	2 cut(s)	123, 172
BsaHI	GRCGYC	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	4 cut(s)	68, 114, 181, 375
BseBI	CCWGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	4 cut(s)	68, 114, 181, 375
BseRI	GAGGAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	98, 170
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	122, 171
BslFI	GGGAC	2 cut(s)	187, 194
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	187, 194
BsnI	GGCC	2 cut(s)	98, 170
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	26, 33, 118, 289
BspANI	GGCC	2 cut(s)	98, 170
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	113, 297
BspT107I	GGYRCC	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	68, 114, 181, 375
BssMI	GATC	4 cut(s)	26, 33, 118, 289
BssNI	GRCGYC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	51, 109
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	96, 168
BstDEI	CTNAG	2 cut(s)	58, 330
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	4 cut(s)	29, 36, 121, 292
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	26, 33, 118, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	3 cut(s)	42, 121, 170
BsuRI	GGCC	2 cut(s)	98, 170
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	36, 121, 382
Cac8I	GCNNGC	2 cut(s)	96, 168
CviAII	CATG	3 cut(s)	17, 139, 302
CviJI	RGCY	6 cut(s)	71, 98, 170, 268, 295, 362
CviKI_1	RGCY	6 cut(s)	71, 98, 170, 268, 295, 362
DdeI	CTNAG	2 cut(s)	58, 330
DpnI	GATC	4 cut(s)	28, 35, 120, 291
DpnII	GATC	4 cut(s)	26, 33, 118, 289
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	3 cut(s)	20, 142, 305
FaiI	YATR	6 cut(s)	18, 140, 213, 252, 303, 321
FaqI	GGGAC	2 cut(s)	187, 194
FatI	CATG	3 cut(s)	16, 138, 301
FbaI	TGATCA	1 cut(s)	33
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	98, 170
HapII	CCGG	2 cut(s)	122, 171
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	20, 142, 305
HindIII	AAGCTT	2 cut(s)	69, 266
HinfI	GANTC	3 cut(s)	13, 217, 328
HpaII	CCGG	2 cut(s)	122, 171
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	131, 380
Hpy188I	TCNGA	3 cut(s)	26, 38, 226
Hpy8I	GTNNAC	2 cut(s)	131, 380
HpyAV	CCTTC	2 cut(s)	227, 346
HpyCH4III	ACNGT	2 cut(s)	51, 109
HpyCH4IV	ACGT	2 cut(s)	183, 342
HpyCH4V	TGCA	2 cut(s)	4, 20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	58, 330
HpySE526I	ACGT	2 cut(s)	183, 342
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	20, 142, 305
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	26, 33, 118, 289
LmnI	GCTCC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	183, 342
MaeIII	GTNAC	2 cut(s)	338, 365
MalI	GATC	4 cut(s)	28, 35, 120, 291
MboI	GATC	4 cut(s)	26, 33, 118, 289
MboII	GAAGA	2 cut(s)	19, 242
MhlI	GDGCHC	1 cut(s)	364
MlyI	GAGTC	2 cut(s)	226, 322
MnlI	CCTC	2 cut(s)	199, 236
MspI	CCGG	2 cut(s)	122, 171
MspR9I	CCNGG	3 cut(s)	44, 123, 172
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	2 cut(s)	123, 172
NdeII	GATC	4 cut(s)	26, 33, 118, 289
NlaIII	CATG	3 cut(s)	20, 142, 305
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	338, 365
PfeI	GAWTC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	225, 322
PpsI	GAGTC	2 cut(s)	225, 322
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	364
Sau3AI	GATC	4 cut(s)	26, 33, 118, 289
SchI	GAGTC	2 cut(s)	226, 322
ScrFI	CCNGG	3 cut(s)	44, 123, 172
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	6 cut(s)	73, 186, 270, 297, 345, 364
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	3 cut(s)	42, 121, 170
TaaI	ACNGT	2 cut(s)	51, 109
TaiI	ACGT	2 cut(s)	186, 345
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	2 cut(s)	36, 121
TseFI	GTSAC	2 cut(s)	338, 365
Tsp45I	GTSAC	2 cut(s)	338, 365
TspDTI	ATGAA	5 cut(s)	5, 76, 186, 243, 318
TspRI	CASTG	2 cut(s)	36, 121
XspI	CTAG	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.