Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

12221610 .. 12222590

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1148600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATTCATGCAGTAAAATCACTCAGAACCCAAATCCGAGCACCGTCGAACTCGGGTCGGATTGCTTCCGGAGTCGTATTAAGGCAGGCCACAACTATTTCTAGCGATCCAAACAGTAAACACAACATGAACAAGGCAGAGTGTCCCGATCAGAAAACTGGAGATGTGATGTCCCAATCATTTGGGGAAGGGTACGCGACAAGGTCCGATGAAGAAGGATTTGGAGGAGTGTTTTCGGACAATCAGACTTTTCCGAAGACGGAACAGGATCAGCTGATCCATGAGAATCACCCTGCTTATGACAAGACGCAGGGAAGCGAAGTCAAGGAGAAGGAGAAAGGGAGATGCCAGACCCAGGCCAATGCATCTACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.67

Weight (kDa)

6.41

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	68
AclWI	GGATC	3 cut(s)	101, 271, 276
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	3 cut(s)	101, 271, 276
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	2 cut(s)	87, 357
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	356
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	335, 374
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	89, 359
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	129, 157
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	129, 157
BsnI	GGCC	2 cut(s)	89, 359
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	106, 148, 268, 276
BspANI	GGCC	2 cut(s)	89, 359
BspCNI	CTCAG	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	197
BspPI	GGATC	3 cut(s)	101, 271, 276
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	4 cut(s)	106, 148, 268, 276
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	45, 116
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	4 cut(s)	109, 151, 271, 279
BstMBI	GATC	4 cut(s)	106, 148, 268, 276
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	89, 359
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	8, 127, 281
CviJI	RGCY	3 cut(s)	89, 274, 359
CviKI_1	RGCY	3 cut(s)	89, 274, 359
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	4 cut(s)	108, 150, 270, 278
DpnII	GATC	4 cut(s)	106, 148, 268, 276
Eco47I	GGWCC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	3 cut(s)	11, 130, 284
FaiI	YATR	4 cut(s)	9, 128, 282, 300
FaqI	GGGAC	2 cut(s)	129, 157
FatI	CATG	3 cut(s)	7, 126, 280
FspBI	CTAG	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	89, 359
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	11, 130, 284
HinfI	GANTC	3 cut(s)	4, 72, 286
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	8 cut(s)	26, 38, 60, 153, 208, 238, 246, 255
Hpy188III	TCNNGA	2 cut(s)	69, 146
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	182, 209, 325
HpyCH4III	ACNGT	2 cut(s)	45, 116
HpyCH4V	TGCA	2 cut(s)	11, 365
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	11, 130, 284
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	4 cut(s)	106, 148, 268, 276
LpnPI	CCDG	9 cut(s)	71, 82, 144, 251, 296, 306, 341, 362, 368
LweI	GCATC	2 cut(s)	335, 374
MaeI	CTAG	1 cut(s)	102
MalI	GATC	4 cut(s)	108, 150, 270, 278
MboI	GATC	4 cut(s)	106, 148, 268, 276
MboII	GAAGA	2 cut(s)	224, 268
MhlI	GDGCHC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	197
NdeII	GATC	4 cut(s)	106, 148, 268, 276
NlaIII	CATG	3 cut(s)	11, 130, 284
NsiI	ATGCAT	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	4, 286
PflFI	GACNNNGTC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	4 cut(s)	106, 148, 268, 276
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	2 cut(s)	206, 276
SfaNI	GCATC	2 cut(s)	335, 374
SinI	GGWCC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	45, 116
TaqI	TCGA	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	4, 286
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	143, 225
TspGWI	ACGGA	1 cut(s)	275
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	204
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.