Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

22455090 .. 22456077

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1262800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGACAAGGCACAAGGCCCCAATCAGAAAACCGGAGATGTGATGTCCCAATCATTTGGGGAAGGGTATGCGACGAGGTCTGATGACGAAGGATTTGGAGGGGTGTTTTCAGACAACCAGACTCTTCCGAAGACGGAGCAGGACCAGCTGATCCATGCGAACCACCCGGCATATGACAAGACGCAGGGAAGTGAAGTTAAGGAGAAGGAGAAAGGGCGATGCCAGACCCAGCCCAACGCATCTACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.06

Weight (kDa)

4.97

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	145
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspS9I	GGNCC	2 cut(s)	17, 142
AsuC2I	CCSGG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	17, 142
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	209, 248
BpiI	GAAGAC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	228
BshFI	GGCC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	33, 167
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	145
BssMI	GATC	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	17, 142
CseI	GACGC	1 cut(s)	190
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	3 cut(s)	18, 148, 232
CviKI_1	RGCY	3 cut(s)	18, 148, 232
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	17
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	69, 156, 172, 174
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	172
GsaI	CCCAGC	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	33, 167
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	33, 167
Hpy188I	TCNGA	4 cut(s)	27, 82, 112, 129
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	56, 83, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	8 cut(s)	46, 125, 131, 158, 170, 180, 236, 242
LweI	GCATC	2 cut(s)	209, 248
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	116, 142
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	2 cut(s)	69, 92
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	33, 167
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	17, 142
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	17, 142
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	2 cut(s)	80, 150
SfaNI	GCATC	2 cut(s)	209, 248
SinI	GGWCC	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	149
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.