FvH4_1g13390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004400
Physical Location & Seq
Reverse (-)
7340107 .. 7341184
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13390.t1

Sequence Viewer

Length: 387 bp
ATGCAGAAGATGATTACTGCAATCAGCTCAGTGATCAGAACCCAGACACCGTCGTACTTAGGCCGGAAAGCTTCTCAGGTCGGATTCATCAGGCAGGCCAGAACAATTGTGTCGAGTGATCCAGGTAGTAAACACAACATGGACAAGGCAGAGAATCCAAACCAGAAAACTGCGACTGGGGACGTGATGTCTCATTCATTTGGGGAGGGGTATGCAACTCGATCCGATGAAGAAGGATTTGGAGGGATATATAGCGATAACCAAAGGCTTCCTAACAAAGTTGAGCAGGACCAGATGATCCATGCGAACAATCCTGCTTATGACAAGACTCAGGGAAGTGAAGTCAAGGAGAAGGAGAAAGCTCGGCACCAACCCAAAGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.18

Weight (kDa)

9.19

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 366
AclWI GGATC 3 cut(s) 113, 216, 292
AfaI GTAC 1 cut(s) 56
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 3 cut(s) 27, 71, 362
AluI AGCT 3 cut(s) 27, 71, 362
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 3 cut(s) 113, 216, 292
AoxI GGCC 2 cut(s) 61, 96
AspS9I GGNCC 1 cut(s) 289
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 289
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 123
BseMII CTCAG 3 cut(s) 42, 89, 344
BseNI ACTGG 1 cut(s) 181
BshFI GGCC 2 cut(s) 63, 98
BshNI GGYRCC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 63, 98
Bsp143I GATC 4 cut(s) 33, 118, 221, 297
BspANI GGCC 2 cut(s) 63, 98
BspCNI CTCAG 3 cut(s) 41, 88, 343
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 3 cut(s) 113, 216, 292
BspT107I GGYRCC 1 cut(s) 366
BsrI ACTGG 1 cut(s) 181
BssMI GATC 4 cut(s) 33, 118, 221, 297
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 4 cut(s) 28, 58, 75, 330
BstKTI GATC 4 cut(s) 36, 121, 224, 300
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 4 cut(s) 33, 118, 221, 297
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BsuRI GGCC 2 cut(s) 63, 98
BtrI CACGTC 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 55
CviAII CATG 2 cut(s) 139, 302
CviJI RGCY 6 cut(s) 27, 63, 71, 98, 268, 362
CviKI_1 RGCY 6 cut(s) 27, 63, 71, 98, 268, 362
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 4 cut(s) 28, 58, 75, 330
DpnI GATC 4 cut(s) 35, 120, 223, 299
DpnII GATC 4 cut(s) 33, 118, 221, 297
DriI GACNNNNNGTC 1 cut(s) 187
Eam1105I GACNNNNNGTC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 142, 305
FaiI YATR 6 cut(s) 140, 213, 250, 252, 303, 321
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 138, 301
FbaI TGATCA 1 cut(s) 33
HaeIII GGCC 2 cut(s) 63, 98
HapII CCGG 1 cut(s) 64
Hin1II CATG 2 cut(s) 142, 305
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 84, 154, 328
HpaII CCGG 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 38, 83, 226
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 227, 346
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 4, 20, 215
HpyF3I CTNAG 4 cut(s) 28, 58, 75, 330
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 142, 305
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 4 cut(s) 33, 118, 221, 297
MaeII ACGT 1 cut(s) 183
MalI GATC 4 cut(s) 35, 120, 223, 299
MboI GATC 4 cut(s) 33, 118, 221, 297
MboII GAAGA 2 cut(s) 19, 242
MfeI CAATTG 1 cut(s) 105
MluCI AATT 1 cut(s) 105
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 199, 236
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 123
NdeII GATC 4 cut(s) 33, 118, 221, 297
NlaIII CATG 2 cut(s) 142, 305
NlaIV GGNNCC 1 cut(s) 368
NmeAIII GCCGAG 1 cut(s) 343
PfeI GAWTC 2 cut(s) 84, 154
PflFI GACNNNGTC 1 cut(s) 49
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 49
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 33, 118, 221, 297
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 123
SetI ASST 6 cut(s) 29, 73, 81, 127, 186, 364
SinI GGWCC 1 cut(s) 289
Sse9I AATT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 113, 220
TasI AATT 1 cut(s) 105
TfiI GAWTC 2 cut(s) 84, 154
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 76, 186, 243
TspRI CASTG 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.