Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

22467741 .. 22468550

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1262900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACCACTGCGATCAGATTAATTCGACCCCAACCGCCAGCTTGGATATTCACGCCGCCGCTGCCGTCAAACTTAGGCCGGAAAGCTTCCGGAGTCCGATTTAAGCAGGCTGCAAGTGTAGACGTTTCTAGTGAGCCCGAAAGTGAGAACGGTAACATGGACAAGCAACAGGACAAACCTACTGAGAAAACTGGGTCTGTGGACCTTCTGTCACATTCTTTCGGGGAGGGGTATGCGTCGAGGTGCGATGACGAAGGATTTGGTGGGATATATGGAGGAAATCAGTCCCTTCCAAAGACGGAGCACGGTCAGCTGGTCCATGAGAACCATCCGGTCTACGACAAGTCGCAGGGAAGTGAAGTGAAGGAGAAGGAGAAAGCACGACACCAGACCGATGCCTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.72

Weight (kDa)

5.94

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	120, 336
AccIII	TCCGGA	1 cut(s)	89
AciI	CCGC	3 cut(s)	35, 56, 59
AhdI	GACNNNNNGTC	1 cut(s)	208
AluBI	AGCT	3 cut(s)	41, 86, 313
AluI	AGCT	3 cut(s)	41, 86, 313
Alw21I	GWGCWC	1 cut(s)	306
Aor13HI	TCCGGA	1 cut(s)	89
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	61, 110
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	202, 316
AvaII	GGWCC	2 cut(s)	202, 316
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	48, 97
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	4 cut(s)	56, 59, 62, 111
BlsI	GCNGC	4 cut(s)	57, 60, 63, 112
Bme18I	GGWCC	2 cut(s)	202, 316
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	202, 316
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	89, 331
Bse1I	ACTGG	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	89
BseGI	GGATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	48, 97
BshFI	GGCC	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	79, 90, 332
BslFI	GGGAC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	138, 306
Bsp13I	TCCGGA	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	3 cut(s)	35, 56, 59
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	175
BspEI	TCCGGA	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	152, 308
BstC8I	GCNNGC	2 cut(s)	39, 108
BstDEI	CTNAG	2 cut(s)	73, 183
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 310
BstV1I	GCAGC	2 cut(s)	48, 97
BsuRI	GGCC	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	39, 108
Cfr13I	GGNCC	2 cut(s)	202, 316
CseI	GACGC	1 cut(s)	225
CviAII	CATG	2 cut(s)	157, 320
CviJI	RGCY	6 cut(s)	41, 78, 86, 110, 136, 313
CviKI_1	RGCY	6 cut(s)	41, 78, 86, 110, 136, 313
DdeI	CTNAG	2 cut(s)	73, 183
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	202, 316
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	2 cut(s)	160, 323
FaiI	YATR	6 cut(s)	158, 234, 271, 273, 321, 406
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	156, 319
FblI	GTMKAC	2 cut(s)	120, 336
Fnu4HI	GCNGC	4 cut(s)	56, 59, 62, 111
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	56, 59, 62, 111
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	56, 59, 62, 111
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	3 cut(s)	79, 90, 332
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	160, 323
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	3 cut(s)	79, 90, 332
Hpy166II	GTNNAC	3 cut(s)	121, 202, 337
Hpy188I	TCNGA	2 cut(s)	17, 98
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	3 cut(s)	121, 202, 337
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	5 cut(s)	215, 248, 299, 358, 364
HpyCH4III	ACNGT	2 cut(s)	152, 308
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 310
HpyF3I	CTNAG	2 cut(s)	73, 183
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	160, 323
Kpn2I	TCCGGA	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	48, 97
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	152, 210
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	393
MhlI	GDGCHC	2 cut(s)	138, 306
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	220, 234, 269
MroI	TCCGGA	1 cut(s)	89
MseI	TTAA	2 cut(s)	20, 102
MspA1I	CMGCKG	2 cut(s)	61, 313
MspI	CCGG	3 cut(s)	79, 90, 332
MwoI	GCNNNNNNNGC	2 cut(s)	61, 310
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	160, 323
NmuCI	GTSAC	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	57, 60, 63, 112
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PshBI	ATTAAT	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	202, 316
PvuII	CAGCTG	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	20, 102
SatI	GCNGC	4 cut(s)	56, 59, 62, 111
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	202, 316
SchI	GAGTC	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	138, 306
SetI	ASST	7 cut(s)	43, 88, 126, 181, 207, 245, 315
SfaNI	GCATC	1 cut(s)	385
SinI	GGWCC	2 cut(s)	202, 316
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	3 cut(s)	35, 56, 59
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	152, 308
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	25, 239
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	1 cut(s)	21
TauI	GCSGC	2 cut(s)	58, 61
Tru1I	TTAA	2 cut(s)	20, 102
Tru9I	TTAA	2 cut(s)	20, 102
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	2 cut(s)	61, 110
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	202, 316
VspI	ATTAAT	1 cut(s)	20
XmiI	GTMKAC	2 cut(s)	120, 336
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.