RchiOBHm_Chr2g0101741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004400
Physical Location & Seq
Reverse (-)
13215126 .. 13216436
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47627

Sequence Viewer

Length: 411 bp
ATGATTCATGCAATCAAATCAATAAGAACGCAGTCACTGTCTCCGACAATCACACCATCTCTGCATCTGTCGAGTTACTCGAGCCGGAAAGCCTCTCGGGTAGGATTCAGGCAGGCCTCCGCCAAAACTCAGTCGACTGTGCCGGACAGCGAACCCGACATGGACGAGAATCTAGCTGATAACCCACACAAGAAATCTGGGGACGTGATGTCTCAATCGTTTGGTGAGGCATATGCAACACGGTGCGAGGACGATGGATTTGGAGGGATATATGGTGGAAACCAGTCGGTTGCGAAAGTGGAGCAAGAACAGCTCATCCATGAGAACCACCCAGATTATGATAGAACTCAGGGAAGTGAGGTTACGGAGAAAGAGAAAGCTCGACATCAGAAGGAAGATTCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.03

Weight (kDa)

5.64

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AciI CCGC 1 cut(s) 120
AgsI TTSAA 1 cut(s) 402
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 1 cut(s) 205
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 3 cut(s) 176, 313, 380
AluI AGCT 3 cut(s) 176, 313, 380
Alw26I GTCTC 2 cut(s) 45, 216
AlwNI CAGNNNCTG 1 cut(s) 37
Ama87I CYCGRG 2 cut(s) 79, 96
AoxI GGCC 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 2 cut(s) 79, 96
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BccI CCATC 2 cut(s) 64, 248
BcoDI GTCTC 2 cut(s) 45, 216
BfaI CTAG 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 208
BmeT110I CYCGRG 2 cut(s) 79, 96
BmgBI CACGTC 1 cut(s) 205
BmsI GCATC 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 143, 362
BseNI ACTGG 1 cut(s) 283
BshFI GGCC 1 cut(s) 116
BsiHKCI CYCGRG 2 cut(s) 79, 96
BsiSI CCGG 2 cut(s) 85, 143
BslFI GGGAC 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 45, 216
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 79, 96
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 142, 361
BsrI ACTGG 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 39, 139, 243
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 129, 348
BstF5I GGATG 1 cut(s) 315
BstMAI GTCTC 2 cut(s) 45, 216
BstMWI GCNNNNNNNGC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 116
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 37
CviAII CATG 3 cut(s) 8, 160, 320
CviJI RGCY 6 cut(s) 84, 92, 116, 176, 313, 380
CviKI_1 RGCY 6 cut(s) 84, 92, 116, 176, 313, 380
DdeI CTNAG 2 cut(s) 129, 348
DriI GACNNNNNGTC 1 cut(s) 208
Eam1105I GACNNNNNGTC 1 cut(s) 208
EciI GGCGGA 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 116
Eco88I CYCGRG 2 cut(s) 79, 96
FaeI CATG 3 cut(s) 11, 163, 323
FaiI YATR 8 cut(s) 9, 161, 232, 234, 271, 273, 321, 339
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 7, 159, 319
FauNDI CATATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 134
FokI GGATG 1 cut(s) 302
FspBI CTAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 85, 143
Hin1II CATG 3 cut(s) 11, 163, 323
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 4 cut(s) 4, 105, 169, 398
HpaII CCGG 2 cut(s) 85, 143
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 45, 390
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 39, 139, 243
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 11, 64, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 2 cut(s) 129, 348
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 11, 163, 323
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 94, 98, 98, 156, 183, 296, 335, 345
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 33, 74, 361
MboII GAAGA 1 cut(s) 407
MluCI AATT 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 6 cut(s) 103, 127, 220, 241, 257, 352
MseI TTAA 1 cut(s) 409
MspI CCGG 2 cut(s) 85, 143
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeI CATATG 1 cut(s) 232
NlaIII CATG 3 cut(s) 11, 163, 323
NmuCI GTSAC 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 79
PceI AGGCCT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 4 cut(s) 4, 105, 169, 398
PspXI VCTCGAGB 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 409
SetI ASST 5 cut(s) 178, 207, 315, 363, 382
SfaNI GCATC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 406
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 173
StuI AGGCCT 1 cut(s) 116
TaaI ACNGT 3 cut(s) 39, 139, 243
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 71, 80, 134, 382
TasI AATT 1 cut(s) 406
TfiI GAWTC 4 cut(s) 4, 105, 169, 398
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.