Rh2BG154500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004400
Physical Location & Seq
Reverse (-)
13201167 .. 13204450
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG154500.1

Sequence Viewer

Length: 414 bp
ATGATGATTCATGCAATCAAATCAATAAGAACGCAGTCACCGTCTCCGATAATCACACCATCTCTGCATCTGTCGAGTTACTTGAGCCGGAAAGCCTCTCGGGTAGGATTCAGGCAGGCCTCCGCCAAAACTCAGTCGACTGTGCCGGACAGCGAACCCGACATGGACGAGAATCTAGCTGATAACCCACACAAGAAATCTGGGGACGTGATGTCTCAATCGTTTGGTGAGGCATATGCAACACGGTGCGAGGACGATGGATTTGGAGGGATATATGGTGGAAACCAGTCGGTTGCGAAAGTGGAGCAAGAACAGCTCATCCATGAGGACCACCCAGATTATGATAGAACTCAGGGAAGTGAGGTTACGGAGAAAGAGAAAGCTCGACATCAGAAGGAAGCTTCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

5.64

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AciI CCGC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 405
AhdI GACNNNNNGTC 1 cut(s) 211
AjiI CACGTC 1 cut(s) 208
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 4 cut(s) 179, 316, 383, 401
AluI AGCT 4 cut(s) 179, 316, 383, 401
Alw26I GTCTC 2 cut(s) 48, 219
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 30, 239
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BccI CCATC 2 cut(s) 67, 251
BcoDI GTCTC 2 cut(s) 48, 219
BfaI CTAG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 328
BmsI GCATC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 146, 365
BseNI ACTGG 1 cut(s) 286
BshFI GGCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 88, 146
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 48, 219
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 99
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 145, 364
BsrI ACTGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 42, 142, 246
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 132, 351
BstF5I GGATG 1 cut(s) 318
BstMAI GTCTC 2 cut(s) 48, 219
BstMWI GCNNNNNNNGC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 119
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 328
CviAII CATG 3 cut(s) 11, 163, 323
CviJI RGCY 7 cut(s) 87, 95, 119, 179, 316, 383, 401
CviKI_1 RGCY 7 cut(s) 87, 95, 119, 179, 316, 383, 401
DdeI CTNAG 2 cut(s) 132, 351
DriI GACNNNNNGTC 1 cut(s) 211
Eam1105I GACNNNNNGTC 1 cut(s) 211
EciI GGCGGA 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 3 cut(s) 14, 166, 326
FaiI YATR 8 cut(s) 12, 164, 235, 237, 274, 276, 324, 342
FaqI GGGAC 1 cut(s) 218
FatI CATG 3 cut(s) 10, 162, 322
FauNDI CATATG 1 cut(s) 235
FblI GTMKAC 1 cut(s) 137
FokI GGATG 1 cut(s) 305
FspBI CTAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 88, 146
Hin1II CATG 3 cut(s) 14, 166, 326
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 3 cut(s) 7, 108, 172
HpaII CCGG 2 cut(s) 88, 146
HphI GGTGA 2 cut(s) 30, 239
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 48, 393
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 3 cut(s) 42, 142, 246
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 14, 67, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 2 cut(s) 132, 351
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 14, 166, 326
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 8 cut(s) 97, 101, 101, 159, 186, 299, 338, 348
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 36, 77, 364
MluCI AATT 1 cut(s) 409
MnlI CCTC 7 cut(s) 106, 130, 223, 244, 260, 319, 355
MseI TTAA 1 cut(s) 412
MspI CCGG 2 cut(s) 88, 146
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeI CATATG 1 cut(s) 235
NlaIII CATG 3 cut(s) 14, 166, 326
NmuCI GTSAC 1 cut(s) 36
PceI AGGCCT 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 3 cut(s) 7, 108, 172
PspPI GGNCC 1 cut(s) 328
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 328
SetI ASST 6 cut(s) 181, 210, 318, 366, 385, 403
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 1 cut(s) 409
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 176
StuI AGGCCT 1 cut(s) 119
TaaI ACNGT 3 cut(s) 42, 142, 246
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 74, 137, 385
TasI AATT 1 cut(s) 409
TfiI GAWTC 3 cut(s) 7, 108, 172
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.