Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004400

Physical Location & Seq

Genomic Coordinates Reverse (-)

8633241 .. 8636353

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0101800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGCAACAGAGAACGGTTCAGCAGCTCGAAGAAATGCAGCACGGCCCTGTTCCCGTCGAACAGCTTCAGGCATCAGGCATTGCTTCCCTTGATGTGAAGAAGCTCAAAGATGCGGGTCTTTGCACAGTTGAATCTGTTGCTTACTCACCAAGGAAAGATCTTCTGCAAATCAAAGGAATCAGTGAAGCTAAAGTTGACAAGATCATTGAAGCAGCCTCCAAACTGGTGCCTTTGGGTTTTACTAGTGCTACTCAGCTTCATGCTCAGAGACTCGAAATCATTCAAATCACTTCTGGATCAAGAGAACTTGATAAGATATTGGAGGGAGGAATCGAGACAGGATCTATTACTGAGATATATGGTGAGTTCCGCTCCGGAAAGACTCAGCTGTGCCACACACTTTGTGTCACTTGCCAACTCCCATTAGATAAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCTGAGGGTACATTCAGGCCACAGAGACTCTTACAGATAGCAGAGAGGTTTGGACTCAACGGTGCTGATGTTTTGGAAAACGTTGCCTACGCTAGAGCATATAACACTGATCATCAATCAAGGCTCCTGCTTGAAGCAGCTTCAATGATGGTAGAAACAAGGTTTGCTCTCATGATAGTAGACAGTGCCACAGCCCTCTACAGAACAGATTTCTCCGGAAGAGGAGAACTCTCAGCACGGCAGATGCATCTTGCAAAATTTCTCCGGAGTCTTCAGAAGTTAGCAGATGAGTTTGGTGTGGCTGTTGTTATCACAAATCAAGTAGTTGCACAAGTGGATGGTTCTGCACTCTTTGCTGGGCCTCAAATTAAGCCTATTGGTGGTAACATCATGGCCCACGCTTCTACGACAAGGCTTGCTGTCCGGAAGGGAAGAGGGGAGGAGCGCATTTGTAAAGTAATCAGCTCTCCTTGTCTGGCTGAAGCAGAAGCACGGTTTCAGATATCTCCAGAAGGCGTCACGGATGTGAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

36.3

Weight (kDa)

6.14

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_5	PF14520	25 - 74	6.2e-07	Helix-hairpin-helix domain
RecA_N	PF00154	82 - 300	3.5e-12	RecA N-terminal domain
AAA_25	PF13481	85 - 262	2.3e-09	AAA domain
Rad51	PF08423	90 - 332	5.1e-130	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66780 AT5G66780
fragaria_vesca	FvH4_1g13380 FvH4_1g13390
malus_domestica	MD02G1148600.v1.1 MD02G1148700.v1.1 MD15G1262800.v1.1 MD15G1262900.v1.1
prunus_persica	Prupe.7G153900_v2.0.a1
pyrus_communis	pycom02g11710
rosa_chinensis	RchiOBHm_Chr2g0101741 RchiOBHm_Chr2g0101751
rosa_laevigata	RLG00000017097 RLG00000017098
rosa_multiflora	Rmu_co8312965.1_g000001 Rmu_sc0011183.1_g000005 Rmu_sc0011183.1_g000007 Rmu_sc0020365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00141060 Rroxscaffold_2G00141070
rosa_rugosa	Rorug02G0101700 Rorug02G0101800
rosa_samantha	Rh2AG148900 Rh2AG149000 Rh2BG154500 Rh2BG154600 Rh2CG154800 Rh2CG154900 Rh2DG154700 Rh2DG154800
rosa_wichuraiana	Rw2G011630 Rw2G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	648
AccIII	TCCGGA	4 cut(s)	377, 683, 732, 891
AciI	CCGC	2 cut(s)	116, 373
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	2 cut(s)	307, 352
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	3 cut(s)	53, 725, 969
AcyI	GRCGYC	1 cut(s)	984
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	461, 478
AfiI	CCNNNNNNNGG	1 cut(s)	848
AgsI	TTSAA	5 cut(s)	134, 212, 287, 602, 612
AhlI	ACTAGT	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	992
AluBI	AGCT	8 cut(s)	28, 67, 106, 191, 259, 391, 608, 933
AluI	AGCT	8 cut(s)	28, 67, 106, 191, 259, 391, 608, 933
Alw26I	GTCTC	3 cut(s)	265, 332, 487
AlwI	GGATC	2 cut(s)	307, 352
Aor13HI	TCCGGA	4 cut(s)	377, 683, 732, 891
AoxI	GGCC	4 cut(s)	46, 485, 827, 861
ApeKI	GCWGC	4 cut(s)	25, 40, 215, 605
ApoI	RAATTY	1 cut(s)	725
Asp700I	GAANNNNTTC	2 cut(s)	66, 282
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	3 cut(s)	47, 827, 862
AsuHPI	GGTGA	3 cut(s)	141, 377, 455
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	731
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	37, 52, 227, 617
BccI	CCATC	2 cut(s)	610, 800
BceAI	ACGGC	2 cut(s)	61, 722
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	3 cut(s)	265, 332, 487
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	246, 561
BfmI	CTRYAG	1 cut(s)	667
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	4 cut(s)	26, 41, 216, 606
BlsI	GCNGC	4 cut(s)	27, 42, 217, 607
BmgT120I	GGNCC	3 cut(s)	47, 827, 862
BmiI	GGNNCC	2 cut(s)	231, 593
BmsI	GCATC	5 cut(s)	83, 103, 457, 702, 724
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	4 cut(s)	359, 391, 681, 713
BpmI	CTGGAG	1 cut(s)	960
Bpu10I	CCTNAGC	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	984
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	4 cut(s)	377, 683, 732, 891
Bsc4I	CCNNNNNNNGG	1 cut(s)	848
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	81, 462
BseAI	TCCGGA	4 cut(s)	377, 683, 732, 891
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	811, 997
BseLI	CCNNNNNNNGG	1 cut(s)	848
BseMI	GCAATG	2 cut(s)	81, 462
BseMII	CTCAG	6 cut(s)	269, 281, 345, 401, 462, 714
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	705, 923
BseXI	GCAGC	4 cut(s)	37, 52, 227, 617
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	1 cut(s)	798
BshFI	GGCC	4 cut(s)	48, 487, 829, 863
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	378, 684, 733, 892
BslI	CCNNNNNNNGG	1 cut(s)	848
BsmAI	GTCTC	3 cut(s)	265, 332, 487
BsnI	GGCC	4 cut(s)	48, 487, 829, 863
Bsp13I	TCCGGA	4 cut(s)	377, 683, 732, 891
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	5 cut(s)	160, 204, 299, 344, 577
BspACI	CCGC	2 cut(s)	116, 373
BspANI	GGCC	4 cut(s)	48, 487, 829, 863
BspCNI	CTCAG	6 cut(s)	268, 280, 346, 400, 463, 713
BspEI	TCCGGA	4 cut(s)	377, 683, 732, 891
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	231, 593
BspPI	GGATC	2 cut(s)	307, 352
BspT107I	GGYRCC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	81, 462
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	5 cut(s)	160, 204, 299, 344, 577
BssNI	GRCGYC	1 cut(s)	984
BssT1I	CCWWGG	1 cut(s)	152
Bst4CI	ACNGT	5 cut(s)	19, 130, 530, 653, 963
Bst6I	CTCTTC	2 cut(s)	682, 895
BstACI	GRCGYC	1 cut(s)	984
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	6 cut(s)	255, 267, 354, 387, 471, 700
BstF5I	GGATG	2 cut(s)	811, 997
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	5 cut(s)	163, 207, 302, 347, 580
BstMAI	GTCTC	3 cut(s)	265, 332, 487
BstMBI	GATC	5 cut(s)	160, 204, 299, 344, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	821
BstSFI	CTRYAG	1 cut(s)	667
BstV1I	GCAGC	4 cut(s)	37, 52, 227, 617
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	2 cut(s)	160, 344
BstYI	RGATCY	2 cut(s)	160, 344
BsuRI	GGCC	4 cut(s)	48, 487, 829, 863
BtsCI	GGATG	2 cut(s)	811, 997
BtsIMutI	CAGTG	3 cut(s)	190, 573, 658
Cac8I	GCNNGC	1 cut(s)	885
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	1 cut(s)	915
Cfr13I	GGNCC	3 cut(s)	47, 827, 862
CseI	GACGC	1 cut(s)	973
Csp6I	GTAC	2 cut(s)	460, 477
CspCI	CAANNNNNGTGG	2 cut(s)	386, 421
CviAII	CATG	3 cut(s)	263, 640, 859
CviQI	GTAC	2 cut(s)	460, 477
DdeI	CTNAG	6 cut(s)	255, 267, 354, 387, 471, 700
DpnI	GATC	5 cut(s)	162, 206, 301, 346, 579
DpnII	GATC	5 cut(s)	160, 204, 299, 344, 577
DraIII	CACNNNGTG	1 cut(s)	407
Eam1104I	CTCTTC	2 cut(s)	682, 895
EarI	CTCTTC	2 cut(s)	682, 895
Eco130I	CCWWGG	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	972
Eco57I	CTGAAG	3 cut(s)	53, 725, 969
EcoRV	GATATC	1 cut(s)	972
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	266, 643, 862
FaiI	YATR	7 cut(s)	264, 361, 363, 568, 570, 641, 860
FatI	CATG	3 cut(s)	262, 639, 858
FauI	CCCGC	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	26, 41, 216, 606
FokI	GGATG	1 cut(s)	818
Fsp4HI	GCNGC	4 cut(s)	26, 41, 216, 606
FspBI	CTAG	2 cut(s)	246, 561
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	4 cut(s)	26, 41, 216, 606
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	4 cut(s)	48, 487, 829, 863
HapII	CCGG	4 cut(s)	378, 684, 733, 892
HgaI	GACGC	1 cut(s)	973
HhaI	GCGC	1 cut(s)	915
Hin1I	GRCGYC	1 cut(s)	984
Hin1II	CATG	3 cut(s)	266, 643, 862
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	8 cut(s)	134, 180, 273, 333, 385, 495, 522, 736
HpaII	CCGG	4 cut(s)	378, 684, 733, 892
HphI	GGTGA	3 cut(s)	141, 377, 455
Hpy166II	GTNNAC	2 cut(s)	199, 649
Hpy188I	TCNGA	3 cut(s)	270, 744, 969
Hpy188III	TCNNGA	9 cut(s)	297, 303, 337, 378, 640, 684, 733, 892, 977
Hpy8I	GTNNAC	2 cut(s)	199, 649
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	889, 974, 991
HpyCH4III	ACNGT	5 cut(s)	19, 130, 530, 653, 963
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	7 cut(s)	40, 126, 169, 715, 722, 797, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	821
HpyF3I	CTNAG	6 cut(s)	255, 267, 354, 387, 471, 700
HpySE526I	ACGT	1 cut(s)	549
Hsp92I	GRCGYC	1 cut(s)	984
Hsp92II	CATG	3 cut(s)	266, 643, 862
HspAI	GCGC	1 cut(s)	913
Kpn2I	TCCGGA	4 cut(s)	377, 683, 732, 891
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	5 cut(s)	160, 204, 299, 344, 577
LmnI	GCTCC	4 cut(s)	4, 380, 597, 910
Lsp1109I	GCAGC	4 cut(s)	37, 52, 227, 617
LweI	GCATC	5 cut(s)	83, 103, 457, 702, 724
MaeI	CTAG	2 cut(s)	246, 561
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	409, 851, 985
MalI	GATC	5 cut(s)	162, 206, 301, 346, 579
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	5 cut(s)	160, 204, 299, 344, 577
MboII	GAAGA	6 cut(s)	44, 112, 155, 699, 731, 912
MflI	RGATCY	2 cut(s)	160, 344
MluCI	AATT	2 cut(s)	725, 834
MlyI	GAGTC	5 cut(s)	267, 379, 489, 516, 745
Mph1103I	ATGCAT	1 cut(s)	717
MroI	TCCGGA	4 cut(s)	377, 683, 732, 891
MroXI	GAANNNNTTC	2 cut(s)	66, 282
MseI	TTAA	1 cut(s)	837
MslI	CAYNNNNRTG	1 cut(s)	992
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	4 cut(s)	378, 684, 733, 892
MwoI	GCNNNNNNNGC	1 cut(s)	821
NdeII	GATC	5 cut(s)	160, 204, 299, 344, 577
NlaIII	CATG	3 cut(s)	266, 643, 862
NlaIV	GGNNCC	2 cut(s)	231, 593
NmuCI	GTSAC	2 cut(s)	409, 985
NsiI	ATGCAT	1 cut(s)	717
OliI	CACNNNNGTG	1 cut(s)	992
PagI	TCATGA	1 cut(s)	639
PdmI	GAANNNNTTC	2 cut(s)	66, 282
PfeI	GAWTC	3 cut(s)	134, 180, 333
PkrI	GCNGC	4 cut(s)	27, 42, 217, 607
PleI	GAGTC	5 cut(s)	267, 379, 489, 516, 744
PpsI	GAGTC	5 cut(s)	267, 379, 489, 516, 744
Psp1406I	AACGTT	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	824
PspN4I	GGNNCC	2 cut(s)	231, 593
PspPI	GGNCC	3 cut(s)	47, 827, 862
PsuI	RGATCY	2 cut(s)	160, 344
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	461, 478
RsaNI	GTAC	2 cut(s)	460, 477
RseI	CAYNNNNRTG	1 cut(s)	992
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	4 cut(s)	26, 41, 216, 606
Sau3AI	GATC	5 cut(s)	160, 204, 299, 344, 577
Sau96I	GGNCC	3 cut(s)	47, 827, 862
SchI	GAGTC	5 cut(s)	267, 379, 489, 516, 745
SfaNI	GCATC	5 cut(s)	83, 103, 457, 702, 724
SfcI	CTRYAG	1 cut(s)	667
SmiMI	CAYNNNNRTG	1 cut(s)	992
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	2 cut(s)	725, 834
SsiI	CCGC	2 cut(s)	116, 373
SspMI	CTAG	2 cut(s)	246, 561
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	5 cut(s)	19, 130, 530, 653, 963
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	30, 60, 276, 336
TasI	AATT	2 cut(s)	725, 834
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	134, 180, 333
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TscAI	CASTG	3 cut(s)	190, 580, 658
TseFI	GTSAC	2 cut(s)	409, 985
TseI	GCWGC	4 cut(s)	25, 40, 215, 605
Tsp45I	GTSAC	2 cut(s)	409, 985
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	3 cut(s)	190, 580, 658
XapI	RAATTY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	648
XmnI	GAANNNNTTC	2 cut(s)	66, 282
XspI	CTAG	2 cut(s)	246, 561
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.