Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

8535331 .. 8536246

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTGTACATGTTGCTGTTTTTGACTTATGTTCTCATCGTTGATGGTATCTATGAAGTTTTGGCTGCCAAGAATGTTAAAATCCCCAACCCCGAGTTCACGGTAGAATCGGCCACCATGACCCAACTCAACATAGAAGGCCCCCAGTTAAACGCCACGTGGGACATCACCCTCCTCGACACCAACCCTGGCCGGAGACTGGAGTCGCACTACAGCCACGTCCAGGCCGCGGTCAGTTTCAGGAATGGGACCCTCGTGAAACAGCCGGTCCGTTCGTTTGTTCTGAACCGGAGGAACCATACACGTGTCGGTTTGAGACTCGGATTCCTGGGGCAACCGGGAGAACAAGTAGTGCGAGGAATCTCCGACGAGAGGAAGAGTGAGGTGGTGACGTTCGGCGTGAGAGTGCGGGCTAAGGTGTGGTTTAAGAGGTTCTCTGGGCTAAGGCGAACGGAGCAGCCACGAGGTTGGGTGTTGGTCTCCTGCGATAACATTGGTTTCGAGTTTTCCGGGAAGAATGGAACCGGGGAAAAGACGAGTCAGTCAGGGGGGTGCTCTGCCAACTTCCACCAGATAGCTCCCTTCGGTTATCCCTACTTCAGTTATATAGATGACAAGGTACATGCCCGCGCGTTGCTGCGGTTTGTGATACCGGTTATCGACTTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

224

Amino Acids

25.15

Weight (kDa)

9.69

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	541
AccII	CGCG	3 cut(s)	230, 630, 632
AciI	CCGC	5 cut(s)	228, 230, 409, 628, 640
AcoI	YGGCCR	2 cut(s)	111, 190
AcuI	CTGAAG	1 cut(s)	583
AcvI	CACGTG	2 cut(s)	159, 305
AfaI	GTAC	2 cut(s)	8, 621
AfiI	CCNNNNNNNGG	4 cut(s)	199, 223, 229, 372
AflIII	ACRYGT	3 cut(s)	9, 302, 304
AgeI	ACCGGT	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	3 cut(s)	187, 222, 327
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	3 cut(s)	190, 310, 484
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	4 cut(s)	111, 139, 190, 225
ApeKI	GCWGC	3 cut(s)	65, 457, 637
AsiGI	ACCGGT	1 cut(s)	652
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	3 cut(s)	140, 249, 268
AsuC2I	CCSGG	3 cut(s)	339, 511, 526
AsuHPI	GGTGA	2 cut(s)	160, 400
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	249, 268
BauI	CACGAG	2 cut(s)	254, 462
BbrPI	CACGTG	2 cut(s)	159, 305
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	52, 469, 624
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	3 cut(s)	189, 224, 329
BcnI	CCSGG	3 cut(s)	339, 511, 526
BcoDI	GTCTC	3 cut(s)	190, 310, 484
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	4 cut(s)	66, 228, 458, 638
BlsI	GCNGC	4 cut(s)	67, 229, 459, 639
Bme1390I	CCNGG	6 cut(s)	189, 224, 329, 339, 511, 526
Bme18I	GGWCC	2 cut(s)	249, 268
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	140, 249, 268
BmiI	GGNNCC	5 cut(s)	142, 250, 251, 296, 523
BmrFI	CCNGG	6 cut(s)	189, 224, 329, 339, 511, 526
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	2 cut(s)	414, 443
BpuMI	CCSGG	3 cut(s)	339, 511, 526
BsaAI	YACGTR	2 cut(s)	159, 305
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	4 cut(s)	187, 228, 328, 525
BsaWI	WCCGGW	2 cut(s)	288, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 223, 229, 372
Bse118I	RCCGGY	2 cut(s)	265, 652
Bse1I	ACTGG	2 cut(s)	145, 204
BseBI	CCWGG	3 cut(s)	189, 224, 329
BseDI	CCNNGG	4 cut(s)	187, 228, 328, 525
BseLI	CCNNNNNNNGG	4 cut(s)	199, 223, 229, 372
BseNI	ACTGG	2 cut(s)	145, 204
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	52, 469, 624
Bsh1236I	CGCG	3 cut(s)	230, 630, 632
BshFI	GGCC	4 cut(s)	113, 141, 192, 227
BshTI	ACCGGT	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	7 cut(s)	193, 266, 289, 338, 510, 525, 653
BslFI	GGGAC	2 cut(s)	176, 262
BslI	CCNNNNNNNGG	4 cut(s)	199, 223, 229, 372
BsmAI	GTCTC	3 cut(s)	190, 310, 484
BsmFI	GGGAC	2 cut(s)	176, 262
BsnI	GGCC	4 cut(s)	113, 141, 192, 227
Bso31I	GGTCTC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp1407I	TGTACA	1 cut(s)	6
BspACI	CCGC	5 cut(s)	228, 230, 409, 628, 640
BspANI	GGCC	4 cut(s)	113, 141, 192, 227
BspFNI	CGCG	3 cut(s)	230, 630, 632
BspLI	GGNNCC	5 cut(s)	142, 250, 251, 296, 523
BspTNI	GGTCTC	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	265, 652
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	145, 204
BssAI	RCCGGY	2 cut(s)	265, 652
BssECI	CCNNGG	4 cut(s)	187, 228, 328, 525
BssSI	CACGAG	2 cut(s)	254, 462
Bst2BI	CACGAG	2 cut(s)	254, 462
Bst2UI	CCWGG	3 cut(s)	189, 224, 329
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	6
BstBAI	YACGTR	2 cut(s)	159, 305
BstC8I	GCNNGC	2 cut(s)	411, 628
BstDEI	CTNAG	2 cut(s)	414, 443
BstDSI	CCRYGG	1 cut(s)	228
BstFNI	CGCG	3 cut(s)	230, 630, 632
BstHHI	GCGC	1 cut(s)	632
BstMAI	GTCTC	3 cut(s)	190, 310, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	3 cut(s)	189, 224, 329
BstNSI	RCATGY	2 cut(s)	13, 626
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSCI	CCNGG	6 cut(s)	187, 222, 327, 337, 509, 524
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	3 cut(s)	230, 630, 632
BstV1I	GCAGC	3 cut(s)	52, 469, 624
BstXI	CCANNNNNNTGG	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	113, 141, 192, 227
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	411, 628
CfoI	GCGC	1 cut(s)	632
Cfr10I	RCCGGY	2 cut(s)	265, 652
Cfr13I	GGNCC	3 cut(s)	140, 249, 268
Cfr42I	CCGCGG	1 cut(s)	231
CpoI	CGGWCCG	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	7, 620
CspAI	ACCGGT	1 cut(s)	652
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	3 cut(s)	10, 118, 623
CviQI	GTAC	2 cut(s)	7, 620
DdeI	CTNAG	2 cut(s)	414, 443
DrdI	GACNNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	111, 190
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	249, 268
Eco57I	CTGAAG	1 cut(s)	583
Eco72I	CACGTG	2 cut(s)	159, 305
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	140, 249
EcoRII	CCWGG	3 cut(s)	187, 222, 327
FaeI	CATG	3 cut(s)	13, 121, 626
FaiI	YATR	9 cut(s)	11, 30, 54, 119, 134, 300, 606, 608, 624
FaqI	GGGAC	2 cut(s)	176, 262
FatI	CATG	3 cut(s)	9, 117, 622
FauI	CCCGC	2 cut(s)	402, 635
Fnu4HI	GCNGC	4 cut(s)	66, 228, 458, 638
Fsp4HI	GCNGC	4 cut(s)	66, 228, 458, 638
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	4 cut(s)	66, 228, 458, 638
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	113, 141, 192, 227
HapII	CCGG	7 cut(s)	193, 266, 289, 338, 510, 525, 653
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	13, 121, 626
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HinfI	GANTC	6 cut(s)	107, 203, 318, 324, 360, 538
HpaII	CCGG	7 cut(s)	193, 266, 289, 338, 510, 525, 653
HphI	GGTGA	2 cut(s)	160, 400
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	285, 323, 367
Hpy188III	TCNNGA	2 cut(s)	241, 256
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	131, 592
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	4 cut(s)	158, 219, 304, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	2 cut(s)	414, 443
HpySE526I	ACGT	4 cut(s)	158, 219, 304, 392
Hsp92II	CATG	3 cut(s)	13, 121, 626
HspAI	GCGC	1 cut(s)	630
KflI	GGGWCCC	1 cut(s)	249
KspI	CCGCGG	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	454, 583
Lsp1109I	GCAGC	3 cut(s)	52, 469, 624
MaeII	ACGT	4 cut(s)	158, 219, 304, 392
MaeIII	GTNAC	1 cut(s)	388
MboII	GAAGA	2 cut(s)	388, 526
MhlI	GDGCHC	1 cut(s)	557
MlyI	GAGTC	3 cut(s)	212, 312, 547
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	182, 185, 263, 285, 350, 366, 376, 423, 458
MseI	TTAA	4 cut(s)	78, 149, 426, 670
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	7 cut(s)	193, 266, 289, 338, 510, 525, 653
MspR9I	CCNGG	6 cut(s)	189, 224, 329, 339, 511, 526
MvaI	CCWGG	3 cut(s)	189, 224, 329
MvnI	CGCG	3 cut(s)	230, 630, 632
MwoI	GCNNNNNNNGC	1 cut(s)	454
NciI	CCSGG	3 cut(s)	339, 511, 526
NlaIII	CATG	3 cut(s)	13, 121, 626
NlaIV	GGNNCC	5 cut(s)	142, 250, 251, 296, 523
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	2 cut(s)	13, 626
PciI	ACATGT	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	107, 324, 360
PfoI	TCCNGGA	1 cut(s)	509
PinAI	ACCGGT	1 cut(s)	652
PkrI	GCNGC	4 cut(s)	67, 229, 459, 639
PleI	GAGTC	3 cut(s)	211, 312, 546
PmaCI	CACGTG	2 cut(s)	159, 305
PmlI	CACGTG	2 cut(s)	159, 305
PpsI	GAGTC	3 cut(s)	211, 312, 546
Ppu21I	YACGTR	2 cut(s)	159, 305
PpuMI	RGGWCCY	1 cut(s)	249
PscI	ACATGT	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	187, 222, 327
PspCI	CACGTG	2 cut(s)	159, 305
PspGI	CCWGG	3 cut(s)	187, 222, 327
PspN4I	GGNNCC	5 cut(s)	142, 250, 251, 296, 523
PspPI	GGNCC	3 cut(s)	140, 249, 268
PspPPI	RGGWCCY	1 cut(s)	249
RsaI	GTAC	2 cut(s)	8, 621
RsaNI	GTAC	2 cut(s)	7, 620
RseI	CAYNNNNRTG	1 cut(s)	303
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SacII	CCGCGG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	78, 149, 426, 670
SatI	GCNGC	4 cut(s)	66, 228, 458, 638
Sau96I	GGNCC	3 cut(s)	140, 249, 268
SchI	GAGTC	3 cut(s)	212, 312, 547
ScrFI	CCNGG	6 cut(s)	189, 224, 329, 339, 511, 526
SduI	GDGCHC	1 cut(s)	557
SfcI	CTRYAG	1 cut(s)	211
Sfr303I	CCGCGG	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	249, 268
SmiMI	CAYNNNNRTG	1 cut(s)	303
SsiI	CCGC	5 cut(s)	228, 230, 409, 628, 640
StyD4I	CCNGG	6 cut(s)	187, 222, 327, 337, 509, 524
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	4 cut(s)	161, 222, 307, 395
TaqI	TCGA	3 cut(s)	177, 501, 660
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	107, 324, 360
Tru1I	TTAA	4 cut(s)	78, 149, 426, 670
Tru9I	TTAA	4 cut(s)	78, 149, 426, 670
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	65, 457, 637
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	260, 467
VpaK11BI	GGWCC	2 cut(s)	249, 268
XceI	RCATGY	2 cut(s)	13, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.