Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

41712210 .. 41713928

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGAGTGTCAATCCCATGCCCAAGTTTACCAACACCGACACAGAGGGAATGTTTGCTCTTTTGACAATTAAGATGGTGCCTGGCTATGTGGCTCACCCAGGTCAACTGGAAGCCGCCCCACCACCACTGGAGGTAGACGGCCCAATTCCAGACAACAACAACCACATCACTAGGCCGCGCACCTCCGTCTTCCGCAAACTCTTGCTCATATGCTACATCGTTTGGTTGGTGTATTTGCTAGTCATGCAACCCAAAACCCCCAAGTTCAAGGTCGAATCGGCCACTGTTCAGCTCAATACAGAAGGCTCTAAGCTAACCGCCCAGTGGGATATCACTCTCCTCGCCACCAACCCCAACCACAACTTCAAATTCTATTACAAACGCGTCCAGGCCGATGTCCGCTACGCGTTCAGTTCTTACTTCCTTTTCACGCTCGTGGAAACGCCGCGTCCTTCCTTTGTTTTGAACAAGAGTAACCAAACTCGTGTGGAGTTGAAATTGAGTGTGTGGAAGGAATGGCTTGGCCGCAAAGTGGTAGAGGAAATCTCCTCTAGTGAAGTGGTGAGTTTCGGAGTCGATCTCAGCTCTCAGGTGTGGTTTATGTCTAGACTAATGCCTCCGGGACGTGTTTGGCTGGTCGTCTCCTGTGACGAGGTCGATTTCAGGTTTCCCTGGAATAATCGGACCGGCAAATTGACGAGTCAGTCAGGAAAGTGTGTTGTTAAGTACGGAATGATATATATCTTTGAATGCTTAGTTACTTCTTCTTTCCTCTTCTTCGCTATTTGGGCTTGTTGTGTTTGTGATTCAAAGCCACGCAGACCAGCACGCGTGGCGCCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

282

Amino Acids

32.21

Weight (kDa)

9.3

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	706
AccB1I	GGYRCC	2 cut(s)	79, 838
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	5 cut(s)	181, 387, 410, 451, 834
AciI	CCGC	7 cut(s)	117, 179, 196, 321, 403, 449, 529
AcoI	YGGCCR	2 cut(s)	282, 526
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	839
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	327, 535
AflIII	ACRYGT	4 cut(s)	385, 408, 628, 832
AgsI	TTSAA	6 cut(s)	271, 370, 469, 499, 752, 813
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	4 cut(s)	82, 100, 390, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	4 cut(s)	295, 316, 588, 846
AluI	AGCT	4 cut(s)	295, 316, 588, 846
Alw26I	GTCTC	1 cut(s)	649
AoxI	GGCC	5 cut(s)	142, 176, 282, 393, 526
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	183, 841
AspS9I	GGNCC	2 cut(s)	143, 687
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	3 cut(s)	16, 89, 577
AvaII	GGWCC	1 cut(s)	687
BanI	GGYRCC	2 cut(s)	79, 838
BauI	CACGAG	2 cut(s)	437, 486
BbsI	GAAGAC	1 cut(s)	184
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	4 cut(s)	84, 102, 392, 676
BcnI	CCSGG	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	5 cut(s)	174, 242, 555, 609, 843
BfoI	RGCGCY	1 cut(s)	842
BisI	GCNGC	4 cut(s)	117, 179, 449, 529
BlsI	GCNGC	4 cut(s)	118, 180, 450, 530
Bme1390I	CCNGG	5 cut(s)	84, 102, 392, 624, 676
Bme18I	GGWCC	1 cut(s)	687
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	143, 687
BmiI	GGNNCC	2 cut(s)	81, 840
BmrFI	CCNGG	5 cut(s)	84, 102, 392, 624, 676
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	184
BplI	GAGNNNNNCTC	4 cut(s)	533, 565, 567, 599
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	100, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 535
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	3 cut(s)	114, 135, 325
Bse8I	GATNNNNATC	1 cut(s)	743
BseBI	CCWGG	4 cut(s)	84, 102, 392, 676
BseDI	CCNNGG	2 cut(s)	100, 674
BseJI	GATNNNNATC	1 cut(s)	743
BseLI	CCNNNNNNNGG	2 cut(s)	327, 535
BseMII	CTCAG	2 cut(s)	598, 605
BseNI	ACTGG	3 cut(s)	114, 135, 325
BseRI	GAGGAG	2 cut(s)	332, 541
Bsh1236I	CGCG	5 cut(s)	181, 387, 410, 451, 834
BshFI	GGCC	5 cut(s)	144, 178, 284, 395, 528
BshNI	GGYRCC	2 cut(s)	79, 838
BsiSI	CCGG	2 cut(s)	623, 690
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	2 cut(s)	327, 535
BsmAI	GTCTC	1 cut(s)	649
BsmBI	CGTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	5 cut(s)	144, 178, 284, 395, 528
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	7 cut(s)	117, 179, 196, 321, 403, 449, 529
BspANI	GGCC	5 cut(s)	144, 178, 284, 395, 528
BspCNI	CTCAG	2 cut(s)	597, 604
BspFNI	CGCG	5 cut(s)	181, 387, 410, 451, 834
BspLI	GGNNCC	2 cut(s)	81, 840
BspT107I	GGYRCC	2 cut(s)	79, 838
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	3 cut(s)	114, 135, 325
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	100, 674
BssMI	GATC	1 cut(s)	580
BssNI	GRCGYC	1 cut(s)	839
BssSI	CACGAG	2 cut(s)	437, 486
Bst2BI	CACGAG	2 cut(s)	437, 486
Bst2UI	CCWGG	4 cut(s)	84, 102, 392, 676
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	782
BstACI	GRCGYC	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	832
BstDEI	CTNAG	4 cut(s)	312, 584, 591, 757
BstFNI	CGCG	5 cut(s)	181, 387, 410, 451, 834
BstH2I	RGCGCY	1 cut(s)	842
BstHHI	GCGC	2 cut(s)	183, 841
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 791, 836
BstNI	CCWGG	4 cut(s)	84, 102, 392, 676
BstSCI	CCNGG	5 cut(s)	82, 100, 390, 622, 674
BstUI	CGCG	5 cut(s)	181, 387, 410, 451, 834
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	144, 178, 284, 395, 528
BtrI	CACGTC	1 cut(s)	629
BtsIMutI	CAGTG	3 cut(s)	128, 285, 332
Cac8I	GCNNGC	1 cut(s)	832
CfoI	GCGC	2 cut(s)	183, 841
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	143, 687
CpoI	CGGWCCG	1 cut(s)	687
CseI	GACGC	2 cut(s)	376, 440
Csp6I	GTAC	1 cut(s)	730
CspI	CGGWCCG	1 cut(s)	687
CviAII	CATG	2 cut(s)	19, 247
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	4 cut(s)	312, 584, 591, 757
DinI	GGCGCC	1 cut(s)	840
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	2 cut(s)	282, 526
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	687
EcoRII	CCWGG	4 cut(s)	82, 100, 390, 674
EcoRV	GATATC	1 cut(s)	334
EgeI	GGCGCC	1 cut(s)	840
EheI	GGCGCC	1 cut(s)	840
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	2 cut(s)	22, 250
FaiI	YATR	8 cut(s)	20, 90, 212, 214, 248, 605, 742, 744
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	2 cut(s)	18, 246
FauNDI	CATATG	1 cut(s)	212
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	117, 179, 449, 529
Fsp4HI	GCNGC	4 cut(s)	117, 179, 449, 529
FspBI	CTAG	5 cut(s)	174, 242, 555, 609, 843
GlaI	GCGC	2 cut(s)	182, 840
GluI	GCNGC	4 cut(s)	117, 179, 449, 529
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	842
HaeIII	GGCC	5 cut(s)	144, 178, 284, 395, 528
HapII	CCGG	2 cut(s)	623, 690
HgaI	GACGC	2 cut(s)	376, 440
HhaI	GCGC	2 cut(s)	183, 841
Hin1I	GRCGYC	1 cut(s)	839
Hin1II	CATG	2 cut(s)	22, 250
Hin6I	GCGC	2 cut(s)	181, 839
HinP1I	GCGC	2 cut(s)	181, 839
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	4 cut(s)	278, 576, 703, 809
HpaII	CCGG	2 cut(s)	623, 690
HphI	GGTGA	3 cut(s)	16, 89, 577
Hpy166II	GTNNAC	3 cut(s)	30, 107, 139
Hpy188I	TCNGA	2 cut(s)	575, 687
Hpy188III	TCNNGA	3 cut(s)	152, 609, 711
Hpy8I	GTNNAC	3 cut(s)	30, 107, 139
HpyAV	CCTTC	3 cut(s)	299, 465, 508
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 791, 836
HpyF3I	CTNAG	4 cut(s)	312, 584, 591, 757
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	839
Hsp92II	CATG	2 cut(s)	22, 250
HspAI	GCGC	2 cut(s)	181, 839
KasI	GGCGCC	1 cut(s)	838
Kzo9I	GATC	1 cut(s)	580
MaeI	CTAG	5 cut(s)	174, 242, 555, 609, 843
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	476, 650, 760
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	4 cut(s)	184, 759, 769, 772
MluCI	AATT	5 cut(s)	69, 147, 371, 500, 695
MluI	ACGCGT	3 cut(s)	385, 408, 832
Mly113I	GGCGCC	1 cut(s)	839
MlyI	GAGTC	2 cut(s)	585, 712
MnlI	CCTC	9 cut(s)	40, 127, 196, 353, 535, 562, 630, 649, 785
MseI	TTAA	2 cut(s)	72, 726
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	2 cut(s)	623, 690
MspR9I	CCNGG	5 cut(s)	84, 102, 392, 624, 676
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	4 cut(s)	84, 102, 392, 676
MvnI	CGCG	5 cut(s)	181, 387, 410, 451, 834
MwoI	GCNNNNNNNGC	3 cut(s)	247, 791, 836
NarI	GGCGCC	1 cut(s)	839
NciI	CCSGG	1 cut(s)	624
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	2 cut(s)	22, 250
NlaIV	GGNNCC	2 cut(s)	81, 840
NmuCI	GTSAC	1 cut(s)	650
OliI	CACNNNNGTG	1 cut(s)	437
PctI	GAATGC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	278, 809
PflFI	GACNNNGTC	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	4 cut(s)	118, 180, 450, 530
PleI	GAGTC	2 cut(s)	584, 711
PluTI	GGCGCC	1 cut(s)	842
PpsI	GAGTC	2 cut(s)	584, 711
Psp6I	CCWGG	4 cut(s)	82, 100, 390, 674
PspGI	CCWGG	4 cut(s)	82, 100, 390, 674
PspN4I	GGNNCC	2 cut(s)	81, 840
PspPI	GGNCC	2 cut(s)	143, 687
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	437
Rsr2I	CGGWCCG	1 cut(s)	687
RsrII	CGGWCCG	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	72, 726
SatI	GCNGC	4 cut(s)	117, 179, 449, 529
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	2 cut(s)	143, 687
SchI	GAGTC	2 cut(s)	585, 712
ScrFI	CCNGG	5 cut(s)	84, 102, 392, 624, 676
SfoI	GGCGCC	1 cut(s)	840
SinI	GGWCC	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	69, 147, 371, 500, 695
SsiI	CCGC	7 cut(s)	117, 179, 196, 321, 403, 449, 529
SspDI	GGCGCC	1 cut(s)	838
SspMI	CTAG	5 cut(s)	174, 242, 555, 609, 843
StyD4I	CCNGG	5 cut(s)	82, 100, 390, 622, 674
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	3 cut(s)	276, 579, 660
TasI	AATT	5 cut(s)	69, 147, 371, 500, 695
TauI	GCSGC	4 cut(s)	119, 181, 451, 531
TfiI	GAWTC	2 cut(s)	278, 809
Tru1I	TTAA	2 cut(s)	72, 726
Tru9I	TTAA	2 cut(s)	72, 726
TscAI	CASTG	3 cut(s)	135, 292, 332
TseFI	GTSAC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	650
TspGWI	ACGGA	2 cut(s)	178, 747
TspRI	CASTG	3 cut(s)	135, 292, 332
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	5 cut(s)	174, 242, 555, 609, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.