Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

20340329 .. 20341341

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG201700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTCAACTGACTCCACTCGGAGCCGGCCTAACTCCAGGCAACAACCCCCACATCATTAGGCCCACTAAGCGCCCCACCGTCGTCCGTCTCTGCAGCCTCGTCTTCCTCATCGGTTTCGTCAGCTTCCTGGTTTTGGTCATCTATTTTATTATCACCAGGGATCCCACACTCCCCAAGTTCAAGGTCGAATCGGCCACCGTGACCCAACTCAACATTGAAGGCTCCAAGTTAACCGCCACGTGGGACTTCACTCTCCTTGCCATCAACCCTAGCCGCAAACTCGAACCCTACTACGGCCGTGTCCAGGCCGGGGTCCGCTACCAGGATGGGTGCCGCGATGTTTACACCCTCGTGAAAAACCCGTTCCCTTCGTTTGTTCTGAGCCGGAGGAACCAGACACGTGTCAGTTTGAGACTCGGAGTGTGGAGGCAACCGGGGAGGCAAGTGGCGCAGGGAATCTCCGGCGAGAGGAAGAGTGAGTTGGTGAGTTTCGGAGTCAGACTCCTGGCTAAGGTGTGGTTTGAGTACTCTAGGATATTGCCGGCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

184

Amino Acids

20.76

Weight (kDa)

10.49

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	1 cut(s)	339
AciI	CCGC	5 cut(s)	237, 277, 319, 337, 548
AclWI	GGATC	2 cut(s)	158, 171
AcoI	YGGCCR	2 cut(s)	195, 298
AcvI	CACGTG	2 cut(s)	243, 404
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	8 cut(s)	136, 243, 296, 307, 313, 325, 471, 514
AflIII	ACRYGT	2 cut(s)	401, 403
AgsI	TTSAA	2 cut(s)	184, 221
AjnI	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	95, 409
AlwI	GGATC	2 cut(s)	158, 171
AoxI	GGCC	5 cut(s)	28, 62, 195, 298, 309
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	75, 454
AspS9I	GGNCC	2 cut(s)	63, 316
AsuC2I	CCSGG	2 cut(s)	313, 438
AsuHPI	GGTGA	2 cut(s)	148, 499
AvaII	GGWCC	1 cut(s)	316
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	353
BbrPI	CACGTG	2 cut(s)	243, 404
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	272, 323
BceAI	ACGGC	2 cut(s)	285, 313
BciT130I	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
BcnI	CCSGG	2 cut(s)	313, 438
BcoDI	GTCTC	2 cut(s)	95, 409
BfaI	CTAG	2 cut(s)	273, 534
BfmI	CTRYAG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	76
BisI	GCNGC	3 cut(s)	97, 277, 337
BlsI	GCNGC	3 cut(s)	98, 278, 338
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	8 cut(s)	39, 131, 160, 308, 313, 326, 438, 509
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	63, 316
BmiI	GGNNCC	6 cut(s)	25, 165, 226, 317, 335, 395
BmrFI	CCNGG	8 cut(s)	39, 131, 160, 308, 313, 326, 438, 509
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	513
BpuMI	CCSGG	2 cut(s)	313, 438
BsaAI	YACGTR	2 cut(s)	243, 404
BsaJI	CCNNGG	3 cut(s)	159, 312, 437
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 243, 296, 307, 313, 325, 471, 514
Bse118I	RCCGGY	2 cut(s)	26, 544
BseBI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
BseDI	CCNNGG	3 cut(s)	159, 312, 437
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	8 cut(s)	136, 243, 296, 307, 313, 325, 471, 514
BseMII	CTCAG	1 cut(s)	374
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	30, 64, 197, 300, 311
BshNI	GGYRCC	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	6 cut(s)	27, 312, 388, 437, 465, 545
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	8 cut(s)	136, 243, 296, 307, 313, 325, 471, 514
BsmAI	GTCTC	2 cut(s)	95, 409
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	5 cut(s)	30, 64, 197, 300, 311
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	5 cut(s)	237, 277, 319, 337, 548
BspANI	GGCC	5 cut(s)	30, 64, 197, 300, 311
BspCNI	CTCAG	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	6 cut(s)	25, 165, 226, 317, 335, 395
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	2 cut(s)	158, 171
BspT107I	GGYRCC	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	26, 544
BssAI	RCCGGY	2 cut(s)	26, 544
BssECI	CCNNGG	3 cut(s)	159, 312, 437
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	353
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
Bst4CI	ACNGT	2 cut(s)	82, 202
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	2 cut(s)	243, 404
BstC8I	GCNNGC	2 cut(s)	28, 546
BstDEI	CTNAG	3 cut(s)	69, 383, 513
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 454
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	95, 409
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 451
BstNI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	8 cut(s)	37, 129, 158, 306, 311, 324, 436, 507
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	5 cut(s)	30, 64, 197, 300, 311
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	28, 546
CfoI	GCGC	2 cut(s)	75, 454
Cfr10I	RCCGGY	2 cut(s)	26, 544
Cfr13I	GGNCC	2 cut(s)	63, 316
Csp6I	GTAC	1 cut(s)	529
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	3 cut(s)	69, 383, 513
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	195, 298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EclXI	CGGCCG	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	316
Eco52I	CGGCCG	1 cut(s)	298
Eco72I	CACGTG	2 cut(s)	243, 404
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoRII	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
Esp3I	CGTCTC	1 cut(s)	95
FaqI	GGGAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	97, 277, 337
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	97, 277, 337
FspBI	CTAG	2 cut(s)	273, 534
GlaI	GCGC	2 cut(s)	74, 453
GluI	GCNGC	3 cut(s)	97, 277, 337
GsuI	CTGGAG	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	5 cut(s)	30, 64, 197, 300, 311
HapII	CCGG	6 cut(s)	27, 312, 388, 437, 465, 545
HhaI	GCGC	2 cut(s)	75, 454
Hin6I	GCGC	2 cut(s)	73, 452
HinP1I	GCGC	2 cut(s)	73, 452
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	6 cut(s)	13, 191, 417, 459, 498, 504
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	6 cut(s)	27, 312, 388, 437, 465, 545
HphI	GGTGA	2 cut(s)	148, 499
Hpy166II	GTNNAC	2 cut(s)	234, 346
Hpy188I	TCNGA	5 cut(s)	23, 384, 422, 497, 503
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	234, 346
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	215, 381
HpyCH4III	ACNGT	2 cut(s)	82, 202
HpyCH4IV	ACGT	2 cut(s)	242, 403
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 451
HpyF3I	CTNAG	3 cut(s)	69, 383, 513
HpySE526I	ACGT	2 cut(s)	242, 403
HspAI	GCGC	2 cut(s)	73, 452
KroI	GCCGGC	2 cut(s)	26, 544
KroNI	GCCGGC	2 cut(s)	28, 546
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	23, 230
Lsp1109I	GCAGC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	273, 534
MaeII	ACGT	2 cut(s)	242, 403
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	97, 487
MflI	RGATCY	1 cut(s)	163
MlyI	GAGTC	4 cut(s)	7, 411, 498, 507
MnlI	CCTC	7 cut(s)	110, 119, 362, 384, 423, 435, 465
MroNI	GCCGGC	2 cut(s)	26, 544
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	6 cut(s)	27, 312, 388, 437, 465, 545
MspR9I	CCNGG	8 cut(s)	39, 131, 160, 308, 313, 326, 438, 509
MvaI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	70, 451
NaeI	GCCGGC	2 cut(s)	28, 546
NciI	CCSGG	2 cut(s)	313, 438
NdeII	GATC	1 cut(s)	163
NgoMIV	GCCGGC	2 cut(s)	26, 544
NlaIV	GGNNCC	6 cut(s)	25, 165, 226, 317, 335, 395
NmuCI	GTSAC	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	353
PdiI	GCCGGC	2 cut(s)	28, 546
PfeI	GAWTC	2 cut(s)	191, 459
PkrI	GCNGC	3 cut(s)	98, 278, 338
PleI	GAGTC	4 cut(s)	7, 411, 498, 506
PmaCI	CACGTG	2 cut(s)	243, 404
PmlI	CACGTG	2 cut(s)	243, 404
PpsI	GAGTC	4 cut(s)	7, 411, 498, 506
Ppu21I	YACGTR	2 cut(s)	243, 404
PshAI	GACNNNNGTC	1 cut(s)	404
Psp6I	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
PspCI	CACGTG	2 cut(s)	243, 404
PspGI	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
PspN4I	GGNNCC	6 cut(s)	25, 165, 226, 317, 335, 395
PspPI	GGNCC	2 cut(s)	63, 316
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	3 cut(s)	97, 277, 337
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	2 cut(s)	63, 316
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	4 cut(s)	7, 411, 498, 507
ScrFI	CCNGG	8 cut(s)	39, 131, 160, 308, 313, 326, 438, 509
SetI	ASST	5 cut(s)	128, 189, 245, 406, 519
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	353
SsiI	CCGC	5 cut(s)	237, 277, 319, 337, 548
SspMI	CTAG	2 cut(s)	273, 534
StyD4I	CCNGG	8 cut(s)	37, 129, 158, 306, 311, 324, 436, 507
TaaI	ACNGT	2 cut(s)	82, 202
TaiI	ACGT	2 cut(s)	245, 406
TaqI	TCGA	2 cut(s)	189, 285
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	2 cut(s)	279, 339
TfiI	GAWTC	2 cut(s)	191, 459
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	316
XagI	CCTNNNNNAGG	1 cut(s)	512
XspI	CTAG	2 cut(s)	273, 534
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.