Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Forward (+)

7532407 .. 7533843

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG095500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTGCCTGGCTATGTGGCTCACCCAGGTCAACTCGAAGCCGCCCCACCACCACTGGAGGTAAACCGCAAACTCTTGTTCATATGCTACATCGTTTGGGTGGTGTATTTGTTAGTCATGCAACCCAAAACCCCCAAGTTCAAGGTCGAATCGGCCACTGTTCAGCTCAATACAGAAGGCTCTAAGTTAACCGCCCAGTGGGATATCACTCTCCTCGCCACCAACCCCAACCACAACTTCAGATTCTATTACAAACGCGTCCAGGCCGATGTCCGCTACGCGTTCGGTTCTTACTTCCTTTTCACGCTCGTGGAAAAGCCGCGTCCTTCCTTTGTTTTGAACAAAAGTAACCAGACTCGTGTGGAGTTGAAATTGAGTGTGTGGAAGGAATGGCTTGGCCAAAAAGTGGTAGAGGAAATCTCCTCTCGTGAAGTGGTGAGTTTCGGAGTCGAACTCAGCTCTCAGGTGTGGTTTATGTCTAGACTAATGCCTCCGGGACGTGTTTGGCTGGTCGTCTCCTGTGACGAGGTCGATTTCAGGTTTCCCTGGAATAATCGGACCGGAAAATTGACGAGTCAGTCAGGAAAGTGTGTTGTTAAGTACGGAATGATATATATCTCTGAATGCTTAGTTACTTCTTCTTTCCTCTTCTTCGTTATTTGGGCTTGTTGCGTTTGTGATTCAAAGCCACGCAGATCAGCACGCGTCGCGCCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

239

Amino Acids

27.48

Weight (kDa)

9.41

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccII	CGCG	5 cut(s)	258, 281, 322, 705, 710
AciI	CCGC	5 cut(s)	42, 67, 192, 274, 320
AcoI	YGGCCR	2 cut(s)	153, 397
AcuI	CTGAAG	1 cut(s)	223
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	198, 406
AflIII	ACRYGT	4 cut(s)	256, 279, 499, 703
AgsI	TTSAA	4 cut(s)	142, 340, 370, 684
AjiI	CACGTC	1 cut(s)	500
AjnI	CCWGG	4 cut(s)	7, 25, 261, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	166, 459, 717
AluI	AGCT	3 cut(s)	166, 459, 717
Alw26I	GTCTC	1 cut(s)	520
AoxI	GGCC	3 cut(s)	153, 264, 397
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	14, 448
AvaII	GGWCC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	3 cut(s)	308, 357, 426
BciT130I	CCWGG	4 cut(s)	9, 27, 263, 547
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	2 cut(s)	480, 714
BisI	GCNGC	2 cut(s)	42, 320
BlsI	GCNGC	2 cut(s)	43, 321
Bme1390I	CCNGG	5 cut(s)	9, 27, 263, 495, 547
Bme18I	GGWCC	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	5 cut(s)	9, 27, 263, 495, 547
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BplI	GAGNNNNNCTC	4 cut(s)	404, 436, 438, 470
BpmI	CTGGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	25, 545
BsaWI	WCCGGW	1 cut(s)	560
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 406
Bse1I	ACTGG	2 cut(s)	60, 196
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	4 cut(s)	9, 27, 263, 547
BseDI	CCNNGG	2 cut(s)	25, 545
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	2 cut(s)	198, 406
BseMII	CTCAG	2 cut(s)	469, 476
BseNI	ACTGG	2 cut(s)	60, 196
BseRI	GAGGAG	2 cut(s)	203, 412
Bsh1236I	CGCG	5 cut(s)	258, 281, 322, 705, 710
BshFI	GGCC	3 cut(s)	155, 266, 399
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	494, 561
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	198, 406
BsmAI	GTCTC	1 cut(s)	520
BsmBI	CGTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	3 cut(s)	155, 266, 399
Bsp143I	GATC	1 cut(s)	695
BspACI	CCGC	5 cut(s)	42, 67, 192, 274, 320
BspANI	GGCC	3 cut(s)	155, 266, 399
BspCNI	CTCAG	2 cut(s)	468, 475
BspFNI	CGCG	5 cut(s)	258, 281, 322, 705, 710
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	60, 196
BssECI	CCNNGG	2 cut(s)	25, 545
BssMI	GATC	1 cut(s)	695
BssSI	CACGAG	3 cut(s)	308, 357, 426
Bst2BI	CACGAG	3 cut(s)	308, 357, 426
Bst2UI	CCWGG	4 cut(s)	9, 27, 263, 547
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	703
BstDEI	CTNAG	4 cut(s)	183, 455, 462, 628
BstFNI	CGCG	5 cut(s)	258, 281, 322, 705, 710
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	1 cut(s)	698
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	695
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	4 cut(s)	9, 27, 263, 547
BstSCI	CCNGG	5 cut(s)	7, 25, 261, 493, 545
BstUI	CGCG	5 cut(s)	258, 281, 322, 705, 710
BsuRI	GGCC	3 cut(s)	155, 266, 399
BtrI	CACGTC	1 cut(s)	500
BtsIMutI	CAGTG	3 cut(s)	53, 156, 203
Cac8I	GCNNGC	1 cut(s)	703
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	558
CpoI	CGGWCCG	1 cut(s)	558
CseI	GACGC	3 cut(s)	247, 311, 694
Csp6I	GTAC	1 cut(s)	601
CspI	CGGWCCG	1 cut(s)	558
CviAII	CATG	1 cut(s)	118
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	4 cut(s)	183, 455, 462, 628
DpnI	GATC	1 cut(s)	697
DpnII	GATC	1 cut(s)	695
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	2 cut(s)	153, 397
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	223
EcoRII	CCWGG	4 cut(s)	7, 25, 261, 545
EcoRV	GATATC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	520
FaeI	CATG	1 cut(s)	121
FaiI	YATR	7 cut(s)	15, 83, 85, 119, 476, 613, 615
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	42, 320
Fsp4HI	GCNGC	2 cut(s)	42, 320
FspBI	CTAG	2 cut(s)	480, 714
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	2 cut(s)	42, 320
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	155, 266, 399
HapII	CCGG	2 cut(s)	494, 561
HgaI	GACGC	3 cut(s)	247, 311, 694
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HincII	GTYRAC	2 cut(s)	32, 189
HindII	GTYRAC	2 cut(s)	32, 189
HinfI	GANTC	6 cut(s)	149, 243, 355, 447, 574, 680
HpaI	GTTAAC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	494, 561
HphI	GGTGA	2 cut(s)	14, 448
Hpy166II	GTNNAC	3 cut(s)	32, 64, 189
Hpy188I	TCNGA	4 cut(s)	242, 446, 558, 622
Hpy188III	TCNNGA	3 cut(s)	428, 480, 582
Hpy8I	GTNNAC	3 cut(s)	32, 64, 189
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	3 cut(s)	170, 336, 379
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	4 cut(s)	183, 455, 462, 628
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	710
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	695
MaeI	CTAG	2 cut(s)	480, 714
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	3 cut(s)	347, 521, 631
MalI	GATC	1 cut(s)	697
MboI	GATC	1 cut(s)	695
MboII	GAAGA	3 cut(s)	630, 640, 643
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	2 cut(s)	371, 566
MluI	ACGCGT	3 cut(s)	256, 279, 703
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	349, 456, 583
MnlI	CCTC	7 cut(s)	52, 224, 406, 433, 501, 520, 656
Mox20I	TGGCCA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	2 cut(s)	188, 597
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	399
MspI	CCGG	2 cut(s)	494, 561
MspR9I	CCNGG	5 cut(s)	9, 27, 263, 495, 547
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	4 cut(s)	9, 27, 263, 547
MvnI	CGCG	5 cut(s)	258, 281, 322, 705, 710
MwoI	GCNNNNNNNGC	1 cut(s)	707
NciI	CCSGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	83
NdeII	GATC	1 cut(s)	695
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	521
OliI	CACNNNNGTG	1 cut(s)	308
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	149, 243, 680
PflFI	GACNNNGTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	406
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	43, 321
PleI	GAGTC	3 cut(s)	349, 455, 582
PpsI	GAGTC	3 cut(s)	349, 455, 582
Psp6I	CCWGG	4 cut(s)	7, 25, 261, 545
PspGI	CCWGG	4 cut(s)	7, 25, 261, 545
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	558
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	308
Rsr2I	CGGWCCG	1 cut(s)	558
RsrII	CGGWCCG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	188, 597
SatI	GCNGC	2 cut(s)	42, 320
Sau3AI	GATC	1 cut(s)	695
Sau96I	GGNCC	1 cut(s)	558
SchI	GAGTC	3 cut(s)	349, 456, 583
ScrFI	CCNGG	5 cut(s)	9, 27, 263, 495, 547
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	371, 566
SsiI	CCGC	5 cut(s)	42, 67, 192, 274, 320
SspMI	CTAG	2 cut(s)	480, 714
StyD4I	CCNGG	5 cut(s)	7, 25, 261, 493, 545
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	4 cut(s)	36, 147, 450, 531
TasI	AATT	2 cut(s)	371, 566
TauI	GCSGC	2 cut(s)	44, 322
TfiI	GAWTC	3 cut(s)	149, 243, 680
Tru1I	TTAA	2 cut(s)	188, 597
Tru9I	TTAA	2 cut(s)	188, 597
TscAI	CASTG	3 cut(s)	60, 163, 203
TseFI	GTSAC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	3 cut(s)	60, 163, 203
Tth111I	GACNNNGTC	1 cut(s)	527
Van91I	CCANNNNNTGG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	558
XbaI	TCTAGA	1 cut(s)	479
XspI	CTAG	2 cut(s)	480, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.