RLG00000025109

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006382
Physical Location & Seq
Reverse (-)
42026470 .. 42026861
392 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025109

Sequence Viewer

Length: 351 bp
ATGGTGCCTGGCTATGTGGCTCACCCAGGTCAACTCGAAGCCGCCCCACCACCACCAGAGGCCGCGCACCTCCGTCTTCCGCAAACTCTTGCTCATATGCTACATCATTTGGTTGGTGTATTTGCTAGTCATGCAACCCAAAACCCCAAGTTCAAGGTCGAATCGGCCACTGTTCAGCTCAATACAGAAGGCTCTAAGTTAACCGCCCAGTGGGATATCACTCTCCTCGCCACAAACCCCAACCACAACTTCAAATTCTATTACAAACGCGTCCAAGCCGATGTCCGCTACGCGTTCGGTTCTTATGTTCTTTTCACGCTCGTGGAAACGCCGCGTCCTTCCTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

9.05

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 4 cut(s) 65, 270, 293, 334
AciI CCGC 6 cut(s) 42, 63, 80, 204, 286, 332
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 2 cut(s) 268, 291
AgsI TTSAA 2 cut(s) 154, 253
AjnI CCWGG 2 cut(s) 7, 25
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AoxI GGCC 2 cut(s) 60, 165
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 14
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 9, 27
BfaI CTAG 1 cut(s) 126
BisI GCNGC 3 cut(s) 42, 63, 332
BlsI GCNGC 3 cut(s) 43, 64, 333
Bme1390I CCNGG 2 cut(s) 9, 27
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 9, 27
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 9, 27
BseDI CCNNGG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 215
Bsh1236I CGCG 4 cut(s) 65, 270, 293, 334
BshFI GGCC 2 cut(s) 62, 167
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 2 cut(s) 62, 167
BspACI CCGC 6 cut(s) 42, 63, 80, 204, 286, 332
BspANI GGCC 2 cut(s) 62, 167
BspFNI CGCG 4 cut(s) 65, 270, 293, 334
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 25
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 9, 27
Bst4CI ACNGT 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 195
BstFNI CGCG 4 cut(s) 65, 270, 293, 334
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 9, 27
BstSCI CCNGG 2 cut(s) 7, 25
BstUI CGCG 4 cut(s) 65, 270, 293, 334
BstV2I GAAGAC 1 cut(s) 68
BsuRI GGCC 2 cut(s) 62, 167
BtsIMutI CAGTG 2 cut(s) 168, 215
CfoI GCGC 1 cut(s) 67
CseI GACGC 2 cut(s) 259, 323
CviAII CATG 1 cut(s) 131
CviJI RGCY 8 cut(s) 12, 20, 41, 62, 167, 178, 192, 278
CviKI_1 RGCY 8 cut(s) 12, 20, 41, 62, 167, 178, 192, 278
DdeI CTNAG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 165
Eco32I GATATC 1 cut(s) 217
EcoRII CCWGG 2 cut(s) 7, 25
EcoRV GATATC 1 cut(s) 217
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 15, 96, 98, 132, 306
FatI CATG 1 cut(s) 130
FauNDI CATATG 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 42, 63, 332
Fsp4HI GCNGC 3 cut(s) 42, 63, 332
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 42, 63, 332
HaeIII GGCC 2 cut(s) 62, 167
HgaI GACGC 2 cut(s) 259, 323
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 2 cut(s) 32, 201
HindII GTYRAC 2 cut(s) 32, 201
HinfI GANTC 1 cut(s) 161
HpaI GTTAAC 1 cut(s) 201
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 32, 201
Hpy8I GTNNAC 2 cut(s) 32, 201
HpyAV CCTTC 2 cut(s) 182, 348
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 201
LpnPI CCDG 5 cut(s) 12, 21, 39, 69, 221
MaeI CTAG 1 cut(s) 126
MboII GAAGA 1 cut(s) 68
MluCI AATT 1 cut(s) 254
MluI ACGCGT 2 cut(s) 268, 291
MnlI CCTC 3 cut(s) 52, 80, 236
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 9, 27
MvaI CCWGG 2 cut(s) 9, 27
MvnI CGCG 4 cut(s) 65, 270, 293, 334
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeI CATATG 1 cut(s) 96
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 320
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 3 cut(s) 43, 64, 333
Psp6I CCWGG 2 cut(s) 7, 25
PspGI CCWGG 2 cut(s) 7, 25
PspN4I GGNNCC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 42, 63, 332
ScrFI CCNGG 2 cut(s) 9, 27
SetI ASST 4 cut(s) 31, 72, 159, 180
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 1 cut(s) 254
SsiI CCGC 6 cut(s) 42, 63, 80, 204, 286, 332
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 7, 25
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 36, 159
TasI AATT 1 cut(s) 254
TauI GCSGC 3 cut(s) 44, 65, 334
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 175, 215
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 2 cut(s) 175, 215
XapI RAATTY 1 cut(s) 254
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.