Rorug02G0152600

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006382
Physical Location & Seq
Forward (+)
13513633 .. 13515639
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0152600.1

Sequence Viewer

Length: 1491 bp
ATGGGGAATTTATATGAGGAATTGTGGGCGGAGATTTTTAGTAGATTATCAACGGAGAAAGACTTGGTGACATGCATGAAGGTGTCGAAGTCATGGCACCGAATATCATCTGATGTTTGGGCGCGGAGATTTTGGGCGCAATCGGCTCCTTTGGGTCTATACTTCCGCACCGTCCAGACTCCGTTGAGTCCTGACATGCGTAGCCCCACGGACAAGGAGCCATCTTATTTGCCTCGCATGAATTATATCTCTCTATATAATTATCATGTCATGGAAGATAACCTTGAAAGCACACGCACTGATGTCTCTACTTTCTTTAATGATTCAACTGGCGCTTTTAGGAGATCAAAGAGGAAGTGGCAGATATATAGATATTATGAATGGGATGATGATGAAGATGATCTTGATGAGTATCTAGATTGTTGCAATGGATTACTTCTGTTATTGAAGTCGGGAACTTATCAGTTCTATGTGTGCAACCCCATCACCACACAACAAGTCCCCGTACCTAAAGCCTGTGTCCACCAAAACCATGAGCATTTTTGTGCTGCCTTGGCTTTTGACCCTTCGGAATCTCCTCATCACTATAGAGTTGTGAGGATTGATTACTCTGAATCCGTTTCATCAAACTCAAACTCAGCCCTGCTTGATATCTTTTGGTCTGAATACGGACAGTGGGTTAGACATAGGTTGCAACTTGACCCAGGTTTTACTGAGGGGTTTGAGAAGGTGAAGTTGTGCAGGCAATTTGTTTACATGCGGGGCAAGTTATACAGCATAGCCATGTCATGGAAGCTTTTATGCATTGACCTCAAAACTGTTGAAGCTTCGACCCTTGAACTTCCTCTTCATGATGCCGATAAGACCGGAGCAATGGGATGTCTCGGTGTGTCGATGGACCTTCTATGCTATATAAAGCGTATGCATGATACTTCTGATGATCTGCACGATCTGGTAGTTTGGTACTACGATGATCGTTGTGAATCTGGTGAATGGATTCTTAGATATAGTGTTTCTTGCTGCTTGTTGGGATGTGCAATTAAGTATCAAGGGTTTAAGTATGATGATACCGTGGAGCCTTATGCTATAAGTTCAAGTTCTGATGTCTTGTTCTTTGGCACTTCCAATTTGATTTGTTGCTACCATCTCAAAAGCGAAAAGATCAAATTCGTGTGTCATGCCGGTTGCTGTACAATAGATACACCTGGTAATTTCTGGATATTGCGTGCTTTCTTCGTACCTTTCTTCCAGTTCCGAAAGAGAAATAGCGGTTCTACTCTCTTACCAATGGTTTCAGAGGACACAGAGATTTTGACTGCGGGAACAGTATGTGAAGAAATGAATAAAGATGATGAATATGTTGAAGTGATAAACGTTAATTTATGTGATCGTCATGAAGAGCCATTGCCGCCGTTGATTTATCCTAGTGAAATTACTGAAATGCATGTGGAGTTTAGTCATCCGGAGACTTCAAGTTCCGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

496

Amino Acids

57.58

Weight (kDa)

5.02

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 39 5.4e-06 F-box domain
F-box-like PF12937 6 - 44 1.4e-07 F-box-like
FBA_1 PF07734 132 - 321 3.8e-08 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 137 - 294 3.5e-07 KIB1-4 beta-propeller
b-prop_At3g26010-like PF24750 138 - 345 3.5e-11 F-box protein At3g26010-like, beta-propeller
Beta-prop_AT5G49610-like PF23635 139 - 392 2.5e-09 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 789
AccII CGCG 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 1462
AciI CCGC 7 cut(s) 29, 124, 166, 760, 1269, 1319, 1409
AclI AACGTT 1 cut(s) 1374
AcsI RAATTY 2 cut(s) 7, 1166
AfaI GTAC 4 cut(s) 507, 965, 1192, 1239
AfiI CCNNNNNNNGG 1 cut(s) 789
AgsI TTSAA 8 cut(s) 287, 327, 448, 824, 839, 1095, 1364, 1473
AjnI CCWGG 2 cut(s) 703, 1204
AluBI AGCT 2 cut(s) 796, 827
AluI AGCT 2 cut(s) 796, 827
Alw26I GTCTC 3 cut(s) 310, 887, 1460
Aor13HI TCCGGA 1 cut(s) 1462
ApeKI GCWGC 2 cut(s) 548, 1020
ApoI RAATTY 2 cut(s) 7, 1166
Asp700I GAANNNNTTC 1 cut(s) 996
AspLEI GCGC 3 cut(s) 124, 139, 335
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 4 cut(s) 79, 478, 742, 1001
AvaII GGWCC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 535, 1007
BccI CCATC 4 cut(s) 229, 491, 889, 1152
BceAI ACGGC 1 cut(s) 1396
BciT130I CCWGG 2 cut(s) 705, 1206
BcoDI GTCTC 3 cut(s) 310, 887, 1460
BfaI CTAG 2 cut(s) 416, 1425
BfmI CTRYAG 1 cut(s) 586
BfoI RGCGCY 1 cut(s) 336
BisI GCNGC 3 cut(s) 549, 1021, 1409
BlsI GCNGC 3 cut(s) 550, 1022, 1410
Bme1390I CCNGG 2 cut(s) 705, 1206
Bme18I GGWCC 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 4 cut(s) 98, 147, 219, 1077
BmrFI CCNGG 2 cut(s) 705, 1206
BmsI GCATC 1 cut(s) 844
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 207, 552, 703, 1071
BsaWI WCCGGW 2 cut(s) 866, 1462
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse118I RCCGGY 1 cut(s) 1181
Bse1I ACTGG 2 cut(s) 334, 1249
Bse3DI GCAATG 3 cut(s) 433, 879, 1403
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 1462
BseBI CCWGG 2 cut(s) 705, 1206
BseDI CCNNGG 4 cut(s) 207, 552, 703, 1071
BseGI GGATG 4 cut(s) 391, 884, 1037, 1459
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMI GCAATG 3 cut(s) 433, 879, 1403
BseMII CTCAG 2 cut(s) 651, 705
BseNI ACTGG 2 cut(s) 334, 1249
BseRI GAGGAG 1 cut(s) 567
BseXI GCAGC 2 cut(s) 535, 1007
BsgI GTGCAG 2 cut(s) 760, 929
Bsh1236I CGCG 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 867, 1182, 1463
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 3 cut(s) 310, 887, 1460
BsmFI GGGAC 1 cut(s) 485
Bsp13I TCCGGA 1 cut(s) 1462
Bsp1407I TGTACA 1 cut(s) 1190
Bsp143I GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
BspACI CCGC 7 cut(s) 29, 124, 166, 760, 1269, 1319, 1409
BspCNI CTCAG 2 cut(s) 650, 706
BspEI TCCGGA 1 cut(s) 1462
BspFNI CGCG 1 cut(s) 124
BspHI TCATGA 2 cut(s) 850, 1393
BspLI GGNNCC 4 cut(s) 98, 147, 219, 1077
BspQI GCTCTTC 1 cut(s) 1392
BspT107I GGYRCC 1 cut(s) 96
BsrDI GCAATG 3 cut(s) 433, 879, 1403
BsrFI RCCGGY 1 cut(s) 1181
BsrGI TGTACA 1 cut(s) 1190
BsrI ACTGG 2 cut(s) 334, 1249
BssAI RCCGGY 1 cut(s) 1181
BssECI CCNNGG 4 cut(s) 207, 552, 703, 1071
BssMI GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 705, 1206
Bst4CI ACNGT 5 cut(s) 172, 675, 820, 1072, 1327
Bst6I CTCTTC 2 cut(s) 852, 1392
BstAUI TGTACA 1 cut(s) 1190
BstC8I GCNNGC 2 cut(s) 743, 1227
BstDEI CTNAG 3 cut(s) 637, 714, 1001
BstDSI CCRYGG 2 cut(s) 207, 1071
BstF5I GGATG 4 cut(s) 391, 884, 1037, 1459
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 3 cut(s) 124, 139, 335
BstKTI GATC 7 cut(s) 347, 403, 943, 952, 976, 1164, 1390
BstMAI GTCTC 3 cut(s) 310, 887, 1460
BstMBI GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
BstMWI GCNNNNNNNGC 3 cut(s) 143, 554, 1408
BstNI CCWGG 2 cut(s) 705, 1206
BstNSI RCATGY 4 cut(s) 75, 199, 760, 1448
BstSCI CCNGG 2 cut(s) 703, 1204
BstSFI CTRYAG 1 cut(s) 586
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 535, 1007
BtgI CCRYGG 2 cut(s) 207, 1071
BtsCI GGATG 4 cut(s) 391, 884, 1037, 1459
BtsIMutI CAGTG 2 cut(s) 297, 680
Cac8I GCNNGC 2 cut(s) 743, 1227
CciI TCATGA 2 cut(s) 850, 1393
CfoI GCGC 3 cut(s) 124, 139, 335
Cfr10I RCCGGY 1 cut(s) 1181
Cfr13I GGNCC 1 cut(s) 898
CsiI ACCWGGT 1 cut(s) 1204
Csp6I GTAC 4 cut(s) 506, 964, 1191, 1238
CviQI GTAC 4 cut(s) 506, 964, 1191, 1238
DdeI CTNAG 3 cut(s) 637, 714, 1001
DpnI GATC 7 cut(s) 346, 402, 942, 951, 975, 1163, 1389
DpnII GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
Eam1104I CTCTTC 2 cut(s) 852, 1392
EarI CTCTTC 2 cut(s) 852, 1392
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 552
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 703, 1204
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 552
EcoT22I ATGCAT 4 cut(s) 77, 806, 927, 1446
ErhI CCWWGG 1 cut(s) 552
FalI AAGNNNNNCTT 4 cut(s) 267, 299, 387, 419
FaqI GGGAC 1 cut(s) 485
FauI CCCGC 2 cut(s) 753, 1312
Fnu4HI GCNGC 3 cut(s) 549, 1021, 1409
FokI GGATG 4 cut(s) 398, 891, 1044, 1446
Fsp4HI GCNGC 3 cut(s) 549, 1021, 1409
FspBI CTAG 2 cut(s) 416, 1425
GlaI GCGC 3 cut(s) 123, 138, 334
GluI GCNGC 3 cut(s) 549, 1021, 1409
HaeII RGCGCY 1 cut(s) 336
HapII CCGG 3 cut(s) 867, 1182, 1463
HhaI GCGC 3 cut(s) 124, 139, 335
Hin6I GCGC 3 cut(s) 122, 137, 333
HinP1I GCGC 3 cut(s) 122, 137, 333
HindIII AAGCTT 2 cut(s) 794, 825
HinfI GANTC 7 cut(s) 178, 187, 323, 572, 614, 983, 997
HpaII CCGG 3 cut(s) 867, 1182, 1463
HphI GGTGA 4 cut(s) 79, 478, 742, 1001
Hpy166II GTNNAC 2 cut(s) 523, 754
Hpy188I TCNGA 9 cut(s) 112, 571, 613, 664, 937, 1102, 1256, 1297, 1480
Hpy188III TCNNGA 9 cut(s) 175, 191, 404, 416, 453, 851, 1216, 1394, 1463
Hpy8I GTNNAC 2 cut(s) 523, 754
HpyAV CCTTC 4 cut(s) 73, 576, 721, 911
HpyCH4III ACNGT 5 cut(s) 172, 675, 820, 1072, 1327
HpyCH4IV ACGT 1 cut(s) 1374
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 554, 1408
HpyF3I CTNAG 3 cut(s) 637, 714, 1001
HpySE526I ACGT 1 cut(s) 1374
HspAI GCGC 3 cut(s) 122, 137, 333
Kpn2I TCCGGA 1 cut(s) 1462
Kzo9I GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 4 cut(s) 151, 217, 869, 1075
Lsp1109I GCAGC 2 cut(s) 535, 1007
LweI GCATC 1 cut(s) 844
MabI ACCWGGT 1 cut(s) 1204
MaeI CTAG 2 cut(s) 416, 1425
MaeII ACGT 1 cut(s) 1374
MaeIII GTNAC 1 cut(s) 67
MalI GATC 7 cut(s) 346, 402, 942, 951, 975, 1163, 1389
MboI GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
MboII GAAGA 7 cut(s) 287, 407, 839, 1225, 1237, 1346, 1409
MlyI GAGTC 2 cut(s) 172, 196
MnlI CCTC 9 cut(s) 10, 243, 345, 588, 591, 709, 821, 855, 1291
Mph1103I ATGCAT 4 cut(s) 77, 806, 927, 1446
MroI TCCGGA 1 cut(s) 1462
MroXI GAANNNNTTC 1 cut(s) 996
MseI TTAA 4 cut(s) 318, 1041, 1056, 1377
MslI CAYNNNNRTG 3 cut(s) 80, 543, 782
MspI CCGG 3 cut(s) 867, 1182, 1463
MspR9I CCNGG 2 cut(s) 705, 1206
MvaI CCWGG 2 cut(s) 705, 1206
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 143, 554, 1408
NdeII GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
NlaIV GGNNCC 4 cut(s) 98, 147, 219, 1077
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 4 cut(s) 77, 806, 927, 1446
NspI RCATGY 4 cut(s) 75, 199, 760, 1448
PagI TCATGA 2 cut(s) 850, 1393
PciSI GCTCTTC 1 cut(s) 1392
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 5 cut(s) 323, 572, 614, 983, 997
PflMI CCANNNNNTGG 1 cut(s) 789
PkrI GCNGC 3 cut(s) 550, 1022, 1410
PleI GAGTC 2 cut(s) 172, 195
PpsI GAGTC 2 cut(s) 172, 195
Psp1406I AACGTT 1 cut(s) 1374
Psp6I CCWGG 2 cut(s) 703, 1204
PspGI CCWGG 2 cut(s) 703, 1204
PspN4I GGNNCC 4 cut(s) 98, 147, 219, 1077
PspPI GGNCC 1 cut(s) 898
RsaI GTAC 4 cut(s) 507, 965, 1192, 1239
RsaNI GTAC 4 cut(s) 506, 964, 1191, 1238
RseI CAYNNNNRTG 3 cut(s) 80, 543, 782
SapI GCTCTTC 1 cut(s) 1392
SaqAI TTAA 4 cut(s) 318, 1041, 1056, 1377
SatI GCNGC 3 cut(s) 549, 1021, 1409
Sau3AI GATC 7 cut(s) 344, 400, 940, 949, 973, 1161, 1387
Sau96I GGNCC 1 cut(s) 898
SchI GAGTC 2 cut(s) 172, 196
ScrFI CCNGG 2 cut(s) 705, 1206
SexAI ACCWGGT 1 cut(s) 1204
SfaNI GCATC 1 cut(s) 844
SfcI CTRYAG 1 cut(s) 586
SinI GGWCC 1 cut(s) 898
SmiMI CAYNNNNRTG 3 cut(s) 80, 543, 782
SsiI CCGC 7 cut(s) 29, 124, 166, 760, 1269, 1319, 1409
SspMI CTAG 2 cut(s) 416, 1425
StyD4I CCNGG 2 cut(s) 703, 1204
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 5 cut(s) 172, 675, 820, 1072, 1327
TaiI ACGT 1 cut(s) 1377
TaqI TCGA 3 cut(s) 86, 830, 893
TatI WGTACW 1 cut(s) 1190
TauI GCSGC 1 cut(s) 1411
TfiI GAWTC 5 cut(s) 323, 572, 614, 983, 997
Tru1I TTAA 4 cut(s) 318, 1041, 1056, 1377
Tru9I TTAA 4 cut(s) 318, 1041, 1056, 1377
TscAI CASTG 2 cut(s) 304, 680
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 548, 1020
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 9 cut(s) 92, 254, 393, 408, 612, 839, 1355, 1368, 1410
TspGWI ACGGA 5 cut(s) 68, 171, 224, 607, 684
TspRI CASTG 2 cut(s) 304, 680
Van91I CCANNNNNTGG 1 cut(s) 789
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 2 cut(s) 7, 1166
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 4 cut(s) 75, 199, 760, 1448
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 2 cut(s) 416, 1425
Zsp2I ATGCAT 4 cut(s) 77, 806, 927, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.