Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

42026126 .. 42026443

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025108

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAATTTAGTGTGTGGAAGGAATGGCTTGGCTGCAAAGTGGTAGATGACATCTCCTCTCTTGAAGTAGTGCGTTTCGGAGTCAAACTCAGCTCTCAGGTGTGGTTTATGTCTAGATTAATGCCTCCGGGACGTGTTTGGCTGGCCGTCTCCTGTGACGAGGTCGATTTCAGGTTTCCCTGGAATAATCGGACCGGCAAATTGACGAGTCAGTCAGGAAAGTGTGTTGTTAAGTACGGAAAGATATATATCTTTGAATGCTTGGTTACTTCTTCTTTCCTCTTCTTCGCTAGCTATTTGGGCTTGTTGCGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

106

Amino Acids

12.16

Weight (kDa)

9.39

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	65, 257
AjiI	CACGTC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	93, 294
AluI	AGCT	2 cut(s)	93, 294
Alw26I	GTCTC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	129
AsuNHI	GCTAGC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	114, 291
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	129, 181
Bme18I	GGWCC	1 cut(s)	192
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	129, 181
BmtI	GCTAGC	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	103, 110
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	128, 195
BslFI	GGGAC	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	2 cut(s)	102, 109
BspOI	GCTAGC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	144, 292
BstDEI	CTNAG	2 cut(s)	89, 96
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	127, 179
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	144, 292
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	192
CpoI	CGGWCCG	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	235
CspI	CGGWCCG	1 cut(s)	192
CviJI	RGCY	7 cut(s)	28, 33, 93, 142, 146, 294, 303
CviKI_1	RGCY	7 cut(s)	28, 33, 93, 142, 146, 294, 303
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	89, 96
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	3 cut(s)	110, 247, 249
FaqI	GGGAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	2 cut(s)	114, 291
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	128, 195
HinfI	GANTC	2 cut(s)	81, 208
HpaII	CCGG	2 cut(s)	128, 195
Hpy188I	TCNGA	2 cut(s)	80, 192
Hpy188III	TCNNGA	3 cut(s)	62, 114, 216
HpyAV	CCTTC	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	2 cut(s)	89, 96
HpySE526I	ACGT	1 cut(s)	133
LpnPI	CCDG	9 cut(s)	83, 128, 141, 157, 166, 166, 193, 201, 208
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	114, 291
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	2 cut(s)	155, 265
MboII	GAAGA	3 cut(s)	264, 274, 277
MluCI	AATT	2 cut(s)	5, 200
MlyI	GAGTC	2 cut(s)	90, 217
MnlI	CCTC	4 cut(s)	67, 135, 154, 290
MseI	TTAA	2 cut(s)	119, 231
MspI	CCGG	2 cut(s)	128, 195
MspR9I	CCNGG	2 cut(s)	129, 181
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	129
NheI	GCTAGC	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	263
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	2 cut(s)	89, 216
PpsI	GAGTC	2 cut(s)	89, 216
PshBI	ATTAAT	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	192
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	119, 231
SatI	GCNGC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	2 cut(s)	90, 217
ScrFI	CCNGG	2 cut(s)	129, 181
SetI	ASST	6 cut(s)	95, 102, 136, 165, 176, 296
SinI	GGWCC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	5, 200
SspMI	CTAG	2 cut(s)	114, 291
StyD4I	CCNGG	2 cut(s)	127, 179
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	5, 200
Tru1I	TTAA	2 cut(s)	119, 231
Tru9I	TTAA	2 cut(s)	119, 231
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	1 cut(s)	5
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	2 cut(s)	114, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.