Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

10434186 .. 10434767

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17951.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAATCCCAAACTCCCCGAGTTTAAGGTGGAATCGGCCACCGTGACCCAACTTGACATAGAAGGCCCCCAGTTAACCGCCACGTGGGACATCACCCTCCTGGCCACCAACCCTAGACGCAGACTCAAGTCCTACTACAGCAGCGTCCAGGCCAGGGTCCGGTTCAAGGATGGGCTCGACTCGGATTCTGGCACGGGCAACCGGGAGGACAAGTGGTGTGGGGAATCTCCGAATGAGGTGGTGACATTCGGAGTCAGACTCGTGGCGAAGGTGTGGTTTAAACCGTTTAATAGGTACTCTGATCGATTGCCGGCGTCACGAGGTTGGCTGCTGGTATCCTGCGATAACGTTGATTTCGATTTTTCCGGGAAGAATGGAACCGGTGAAATGACGAGCCAGTCAGGGACGTGCTATGTTAAGTACTATTCGCAAGGTCCCTTCGGTAATAAGATTGAGTTGCCAACAATAGAGGGACTTGATCCCCCTCCAGTCAAAATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

7.63

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	2 cut(s)	36, 102
AcvI	CACGTG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	314
AfaI	GTAC	2 cut(s)	296, 422
AfiI	CCNNNNNNNGG	4 cut(s)	84, 154, 159, 166
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	408
AjnI	CCWGG	3 cut(s)	99, 147, 152
AlwI	GGATC	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	4 cut(s)	36, 64, 102, 150
ApeKI	GCWGC	2 cut(s)	141, 328
AsiGI	ACCGGT	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	65, 157, 434
AsuC2I	CCSGG	2 cut(s)	203, 367
AsuHPI	GGTGA	3 cut(s)	85, 253, 395
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	157, 434
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	2 cut(s)	260, 318
BbrPI	CACGTG	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	153, 315
BccI	CCATC	1 cut(s)	164
BciT130I	CCWGG	3 cut(s)	101, 149, 154
BciVI	GTATCC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	203, 367
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	2 cut(s)	142, 329
BlsI	GCNGC	2 cut(s)	143, 330
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	5 cut(s)	101, 149, 154, 203, 367
Bme18I	GGWCC	2 cut(s)	157, 434
BmeT110I	CYCGRG	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	408
BmgT120I	GGNCC	3 cut(s)	65, 157, 434
BmiI	GGNNCC	4 cut(s)	67, 158, 379, 436
BmrFI	CCNGG	5 cut(s)	101, 149, 154, 203, 367
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BoxI	GACNNNNGTC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	203, 367
Bsa29I	ATCGAT	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	2 cut(s)	159, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 154, 159, 166
Bse118I	RCCGGY	2 cut(s)	310, 380
Bse1I	ACTGG	3 cut(s)	70, 397, 488
BseBI	CCWGG	3 cut(s)	101, 149, 154
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	4 cut(s)	84, 154, 159, 166
BseNI	ACTGG	3 cut(s)	70, 397, 488
BseXI	GCAGC	2 cut(s)	153, 315
BshFI	GGCC	4 cut(s)	38, 66, 104, 152
BshTI	ACCGGT	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	160, 202, 311, 366, 381
BslFI	GGGAC	4 cut(s)	101, 418, 420, 486
BslI	CCNNNNNNNGG	4 cut(s)	84, 154, 159, 166
BsmFI	GGGAC	4 cut(s)	101, 418, 420, 486
BsnI	GGCC	4 cut(s)	38, 66, 104, 152
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	301, 478
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	38, 66, 104, 152
BspDI	ATCGAT	1 cut(s)	304
BspLI	GGNNCC	4 cut(s)	67, 158, 379, 436
BspPI	GGATC	1 cut(s)	473
BsrFI	RCCGGY	2 cut(s)	310, 380
BsrI	ACTGG	3 cut(s)	70, 397, 488
BssAI	RCCGGY	2 cut(s)	310, 380
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	301, 478
BssNI	GRCGYC	1 cut(s)	314
BssSI	CACGAG	2 cut(s)	260, 318
Bst2BI	CACGAG	2 cut(s)	260, 318
Bst2UI	CCWGG	3 cut(s)	101, 149, 154
Bst4CI	ACNGT	2 cut(s)	43, 285
BstACI	GRCGYC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	304, 481
BstMBI	GATC	2 cut(s)	301, 478
BstNI	CCWGG	3 cut(s)	101, 149, 154
BstPAI	GACNNNNGTC	1 cut(s)	127
BstSCI	CCNGG	5 cut(s)	99, 147, 152, 201, 365
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	153, 315
Bsu15I	ATCGAT	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	38, 66, 104, 152
BsuTUI	ATCGAT	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	310, 380
Cfr13I	GGNCC	3 cut(s)	65, 157, 434
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	3 cut(s)	126, 133, 303
Csp6I	GTAC	2 cut(s)	295, 421
CspAI	ACCGGT	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviJI	RGCY	7 cut(s)	38, 66, 104, 152, 175, 328, 396
CviKI_1	RGCY	7 cut(s)	38, 66, 104, 152, 175, 328, 396
CviQI	GTAC	2 cut(s)	295, 421
DpnI	GATC	2 cut(s)	303, 480
DpnII	GATC	2 cut(s)	301, 478
DraI	TTTAAA	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	36, 102
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	157, 434
Eco72I	CACGTG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	17
EcoO109I	RGGNCCY	2 cut(s)	65, 434
EcoRII	CCWGG	3 cut(s)	99, 147, 152
EcoT38I	GRGCYC	1 cut(s)	177
FaiI	YATR	2 cut(s)	59, 414
FaqI	GGGAC	4 cut(s)	101, 418, 420, 486
Fnu4HI	GCNGC	2 cut(s)	142, 329
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	142, 329
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	142, 329
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	38, 66, 104, 152
HapII	CCGG	5 cut(s)	160, 202, 311, 366, 381
HgaI	GACGC	3 cut(s)	126, 133, 303
Hin1I	GRCGYC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	8 cut(s)	4, 32, 123, 179, 185, 224, 252, 258
HpaI	GTTAAC	1 cut(s)	75
HpaII	CCGG	5 cut(s)	160, 202, 311, 366, 381
HphI	GGTGA	3 cut(s)	85, 253, 395
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	5 cut(s)	184, 231, 251, 257, 301
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	56, 262, 448
HpyCH4III	ACNGT	2 cut(s)	43, 285
HpyCH4IV	ACGT	3 cut(s)	83, 348, 407
HpySE526I	ACGT	3 cut(s)	83, 348, 407
Hsp92I	GRCGYC	1 cut(s)	314
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	301, 478
Lsp1109I	GCAGC	2 cut(s)	153, 315
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	3 cut(s)	83, 348, 407
MaeIII	GTNAC	3 cut(s)	43, 241, 315
MalI	GATC	2 cut(s)	303, 480
MboI	GATC	2 cut(s)	301, 478
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	177
MlsI	TGGCCA	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	4 cut(s)	117, 173, 252, 261
MnlI	CCTC	6 cut(s)	107, 199, 229, 314, 463, 495
Mox20I	TGGCCA	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	5 cut(s)	24, 74, 279, 288, 417
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	5 cut(s)	160, 202, 311, 366, 381
MspR9I	CCNGG	5 cut(s)	101, 149, 154, 203, 367
MssI	GTTTAAAC	1 cut(s)	280
MvaI	CCWGG	3 cut(s)	101, 149, 154
NaeI	GCCGGC	1 cut(s)	312
NciI	CCSGG	2 cut(s)	203, 367
NdeII	GATC	2 cut(s)	301, 478
NgoMIV	GCCGGC	1 cut(s)	310
NlaIV	GGNNCC	4 cut(s)	67, 158, 379, 436
NmuCI	GTSAC	3 cut(s)	43, 241, 315
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	4, 32, 185, 224
PfoI	TCCNGGA	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	143, 330
PleI	GAGTC	4 cut(s)	117, 173, 252, 260
PmaCI	CACGTG	1 cut(s)	84
PmeI	GTTTAAAC	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	4 cut(s)	117, 173, 252, 260
Ppu21I	YACGTR	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	434
PshAI	GACNNNNGTC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	3 cut(s)	99, 147, 152
PspCI	CACGTG	1 cut(s)	84
PspGI	CCWGG	3 cut(s)	99, 147, 152
PspN4I	GGNNCC	4 cut(s)	67, 158, 379, 436
PspPI	GGNCC	3 cut(s)	65, 157, 434
PspPPI	RGGWCCY	1 cut(s)	434
RsaI	GTAC	2 cut(s)	296, 422
RsaNI	GTAC	2 cut(s)	295, 421
SaqAI	TTAA	5 cut(s)	24, 74, 279, 288, 417
SatI	GCNGC	2 cut(s)	142, 329
Sau3AI	GATC	2 cut(s)	301, 478
Sau96I	GGNCC	3 cut(s)	65, 157, 434
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	4 cut(s)	117, 173, 252, 261
ScrFI	CCNGG	5 cut(s)	101, 149, 154, 203, 367
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	9 cut(s)	30, 86, 240, 273, 296, 325, 351, 410, 436
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	157, 434
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	5 cut(s)	99, 147, 152, 201, 365
TaaI	ACNGT	2 cut(s)	43, 285
TaiI	ACGT	3 cut(s)	86, 351, 410
TaqI	TCGA	3 cut(s)	177, 304, 357
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	4 cut(s)	4, 32, 185, 224
Tru1I	TTAA	5 cut(s)	24, 74, 279, 288, 417
Tru9I	TTAA	5 cut(s)	24, 74, 279, 288, 417
TseFI	GTSAC	3 cut(s)	43, 241, 315
TseI	GCWGC	2 cut(s)	141, 328
Tsp45I	GTSAC	3 cut(s)	43, 241, 315
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	157, 434
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.