Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002372.1

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

112540 .. 113256

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002372.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggctcaactgactccactcggagccggcctaactccaggcaacaacccccacatcattaggcccactaagctccccaccgtcgtccgtctctgcagcctcgtcttcctcatcggtttcgtcaggttcctggttttggccatctattttattatcaccagggatcccacactccccaagttcaaagtcgaatcggccaccgtgacccaactcaacattgaaggctccaagttaaccgccacgtgggacttcactctccttgccaccaaccctagccgcaaactcgaaccctactacagccgtgtccaggccggggtccgctaccaggatgggtgccgcgatgtttacaccctcgcgaaaaacccgttcccttcgtttgttctgagccggaggaaccagacacgtgtcagtttgagactcggagtgtggaggcaaccggggaggcaagtggcgcagggaatctccggcgagaggaagagtgagttggtgagtttcggagtcagactcctggctaaggtgtggtttgagtactctaggatattgccggcggaacgaggttggatgctggtctcctgcgatagggttgattttgatttttccgggaagaatgggaccggcgaaatgacgagtcggtctgggcagtgcgatgttgactactacccaatacttcccttgggtagtactatcagtaagaataagttggcaaatgctatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

238

Amino Acids

26.65

Weight (kDa)

9.97

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	2 cut(s)	339, 356
AciI	CCGC	5 cut(s)	237, 277, 319, 337, 548
AclWI	GGATC	2 cut(s)	158, 171
AcoI	YGGCCR	2 cut(s)	138, 195
AcvI	CACGTG	2 cut(s)	243, 404
AfaI	GTAC	2 cut(s)	530, 682
AfiI	CCNNNNNNNGG	8 cut(s)	136, 243, 307, 313, 325, 471, 514, 579
AflIII	ACRYGT	2 cut(s)	401, 403
AgsI	TTSAA	2 cut(s)	184, 221
AjnI	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	3 cut(s)	95, 409, 574
AlwI	GGATC	2 cut(s)	158, 171
AoxI	GGCC	5 cut(s)	28, 62, 138, 195, 309
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	3 cut(s)	63, 316, 612
AsuC2I	CCSGG	3 cut(s)	313, 438, 601
AsuHPI	GGTGA	2 cut(s)	148, 499
AvaII	GGWCC	2 cut(s)	316, 612
BalI	TGGCCA	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	333
BbrPI	CACGTG	2 cut(s)	243, 404
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	149, 323
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
BcnI	CCSGG	3 cut(s)	313, 438, 601
BcoDI	GTCTC	3 cut(s)	95, 409, 574
BfaI	CTAG	2 cut(s)	273, 534
BfmI	CTRYAG	2 cut(s)	94, 295
BisI	GCNGC	3 cut(s)	97, 277, 337
BlsI	GCNGC	3 cut(s)	98, 278, 338
BmcAI	AGTACT	2 cut(s)	530, 682
Bme1390I	CCNGG	9 cut(s)	39, 131, 160, 308, 313, 326, 438, 509, 601
Bme18I	GGWCC	2 cut(s)	316, 612
BmgT120I	GGNCC	3 cut(s)	63, 316, 612
BmiI	GGNNCC	8 cut(s)	25, 128, 165, 226, 317, 335, 395, 613
BmrFI	CCNGG	9 cut(s)	39, 131, 160, 308, 313, 326, 438, 509, 601
BmsI	GCATC	1 cut(s)	552
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	513
BpuMI	CCSGG	3 cut(s)	313, 438, 601
BsaAI	YACGTR	2 cut(s)	243, 404
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	4 cut(s)	159, 312, 437, 672
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 243, 307, 313, 325, 471, 514, 579
Bse118I	RCCGGY	3 cut(s)	26, 544, 614
BseBI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
BseDI	CCNNGG	4 cut(s)	159, 312, 437, 672
BseGI	GGATG	2 cut(s)	334, 567
BseLI	CCNNNNNNNGG	8 cut(s)	136, 243, 307, 313, 325, 471, 514, 579
BseMII	CTCAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	339, 356
BshFI	GGCC	5 cut(s)	30, 64, 140, 197, 311
BshNI	GGYRCC	1 cut(s)	333
BsiSI	CCGG	8 cut(s)	27, 312, 388, 437, 465, 545, 600, 615
BslFI	GGGAC	2 cut(s)	260, 625
BslI	CCNNNNNNNGG	8 cut(s)	136, 243, 307, 313, 325, 471, 514, 579
BsmAI	GTCTC	3 cut(s)	95, 409, 574
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	260, 625
BsnI	GGCC	5 cut(s)	30, 64, 140, 197, 311
Bso31I	GGTCTC	1 cut(s)	574
Bsp143I	GATC	1 cut(s)	163
Bsp68I	TCGCGA	1 cut(s)	356
BspACI	CCGC	5 cut(s)	237, 277, 319, 337, 548
BspANI	GGCC	5 cut(s)	30, 64, 140, 197, 311
BspCNI	CTCAG	1 cut(s)	375
BspFNI	CGCG	2 cut(s)	339, 356
BspLI	GGNNCC	8 cut(s)	25, 128, 165, 226, 317, 335, 395, 613
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	2 cut(s)	158, 171
BspT107I	GGYRCC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	574
BsrFI	RCCGGY	3 cut(s)	26, 544, 614
BssAI	RCCGGY	3 cut(s)	26, 544, 614
BssECI	CCNNGG	4 cut(s)	159, 312, 437, 672
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
Bst4CI	ACNGT	2 cut(s)	82, 202
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	2 cut(s)	243, 404
BstC8I	GCNNGC	2 cut(s)	28, 546
BstDEI	CTNAG	3 cut(s)	69, 383, 513
BstENI	CCTNNNNNAGG	2 cut(s)	512, 577
BstF5I	GGATG	2 cut(s)	334, 567
BstFNI	CGCG	2 cut(s)	339, 356
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	3 cut(s)	95, 409, 574
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 451
BstNI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	9 cut(s)	37, 129, 158, 306, 311, 324, 436, 507, 599
BstSFI	CTRYAG	2 cut(s)	94, 295
BstUI	CGCG	2 cut(s)	339, 356
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	5 cut(s)	30, 64, 140, 197, 311
BtgZI	GCGATG	2 cut(s)	354, 660
BtsCI	GGATG	2 cut(s)	334, 567
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	647
BtuMI	TCGCGA	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	28, 546
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	3 cut(s)	26, 544, 614
Cfr13I	GGNCC	3 cut(s)	63, 316, 612
Csp6I	GTAC	2 cut(s)	529, 681
CviQI	GTAC	2 cut(s)	529, 681
DdeI	CTNAG	3 cut(s)	69, 383, 513
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	138, 195
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EciI	GGCGGA	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	672
Eco31I	GGTCTC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	316, 612
Eco72I	CACGTG	2 cut(s)	243, 404
EcoNI	CCTNNNNNAGG	2 cut(s)	512, 577
EcoRII	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
EcoT14I	CCWWGG	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	95
FaiI	YATR	2 cut(s)	713, 715
FaqI	GGGAC	2 cut(s)	260, 625
Fnu4HI	GCNGC	3 cut(s)	97, 277, 337
FokI	GGATG	2 cut(s)	341, 574
Fsp4HI	GCNGC	3 cut(s)	97, 277, 337
FspBI	CTAG	2 cut(s)	273, 534
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	3 cut(s)	97, 277, 337
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	5 cut(s)	30, 64, 140, 197, 311
HapII	CCGG	8 cut(s)	27, 312, 388, 437, 465, 545, 600, 615
HhaI	GCGC	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	2 cut(s)	234, 652
HindII	GTYRAC	2 cut(s)	234, 652
HinfI	GANTC	7 cut(s)	13, 191, 417, 459, 498, 504, 628
HpaI	GTTAAC	1 cut(s)	234
HpaII	CCGG	8 cut(s)	27, 312, 388, 437, 465, 545, 600, 615
HphI	GGTGA	2 cut(s)	148, 499
Hpy166II	GTNNAC	3 cut(s)	234, 346, 652
Hpy188I	TCNGA	5 cut(s)	23, 384, 422, 497, 503
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	3 cut(s)	234, 346, 652
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	215, 381
HpyCH4III	ACNGT	2 cut(s)	82, 202
HpyCH4IV	ACGT	2 cut(s)	242, 403
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 451
HpyF3I	CTNAG	3 cut(s)	69, 383, 513
HpySE526I	ACGT	2 cut(s)	242, 403
HspAI	GCGC	1 cut(s)	452
KroI	GCCGGC	2 cut(s)	26, 544
KroNI	GCCGGC	2 cut(s)	28, 546
KspAI	GTTAAC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	23, 78, 230
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	2 cut(s)	273, 534
MaeII	ACGT	2 cut(s)	242, 403
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	97, 487, 616
MflI	RGATCY	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	5 cut(s)	7, 411, 498, 507, 637
MmeI	TCCRAC	1 cut(s)	539
MnlI	CCTC	8 cut(s)	110, 119, 362, 384, 423, 435, 465, 548
Mox20I	TGGCCA	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	26, 544
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	8 cut(s)	27, 312, 388, 437, 465, 545, 600, 615
MspR9I	CCNGG	9 cut(s)	39, 131, 160, 308, 313, 326, 438, 509, 601
MvaI	CCWGG	6 cut(s)	39, 131, 160, 308, 326, 509
MvnI	CGCG	2 cut(s)	339, 356
MwoI	GCNNNNNNNGC	2 cut(s)	70, 451
NaeI	GCCGGC	2 cut(s)	28, 546
NciI	CCSGG	3 cut(s)	313, 438, 601
NdeII	GATC	1 cut(s)	163
NgoMIV	GCCGGC	2 cut(s)	26, 544
NlaIV	GGNNCC	8 cut(s)	25, 128, 165, 226, 317, 335, 395, 613
NmuCI	GTSAC	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	356
PdiI	GCCGGC	2 cut(s)	28, 546
PfeI	GAWTC	2 cut(s)	191, 459
PfoI	TCCNGGA	1 cut(s)	599
PkrI	GCNGC	3 cut(s)	98, 278, 338
PleI	GAGTC	5 cut(s)	7, 411, 498, 506, 636
PmaCI	CACGTG	2 cut(s)	243, 404
PmlI	CACGTG	2 cut(s)	243, 404
PpsI	GAGTC	5 cut(s)	7, 411, 498, 506, 636
Ppu21I	YACGTR	2 cut(s)	243, 404
PshAI	GACNNNNGTC	1 cut(s)	404
Psp6I	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
PspCI	CACGTG	2 cut(s)	243, 404
PspGI	CCWGG	6 cut(s)	37, 129, 158, 306, 324, 507
PspN4I	GGNNCC	8 cut(s)	25, 128, 165, 226, 317, 335, 395, 613
PspPI	GGNCC	3 cut(s)	63, 316, 612
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	163
RruI	TCGCGA	1 cut(s)	356
RsaI	GTAC	2 cut(s)	530, 682
RsaNI	GTAC	2 cut(s)	529, 681
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	3 cut(s)	97, 277, 337
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	63, 316, 612
ScaI	AGTACT	2 cut(s)	530, 682
SchI	GAGTC	5 cut(s)	7, 411, 498, 507, 637
ScrFI	CCNGG	9 cut(s)	39, 131, 160, 308, 313, 326, 438, 509, 601
SetI	ASST	6 cut(s)	75, 128, 245, 406, 519, 559
SfaNI	GCATC	1 cut(s)	552
SfcI	CTRYAG	2 cut(s)	94, 295
SinI	GGWCC	2 cut(s)	316, 612
SsiI	CCGC	5 cut(s)	237, 277, 319, 337, 548
SspMI	CTAG	2 cut(s)	273, 534
StyD4I	CCNGG	9 cut(s)	37, 129, 158, 306, 311, 324, 436, 507, 599
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	82, 202
TaiI	ACGT	2 cut(s)	245, 406
TaqI	TCGA	2 cut(s)	189, 285
TaqII	GACCGA	1 cut(s)	621
TatI	WGTACW	2 cut(s)	528, 680
TauI	GCSGC	2 cut(s)	279, 339
TfiI	GAWTC	2 cut(s)	191, 459
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	316, 612
XagI	CCTNNNNNAGG	2 cut(s)	512, 577
XspI	CTAG	2 cut(s)	273, 534
ZrmI	AGTACT	2 cut(s)	530, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.