Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Forward (+)

7523619 .. 7525109

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTGCCTGGCTATGTGGCTCACCCAGGTCAACTCGAAGCCGCCCCACCACCACTGGAGGTAGACGGCCCAATTCCAGACAACAACAACCACATCACTAGGCCGCGCACCTCCGTCTTCCGCAAACTCTTGTTCATATGCTACATCGTTTGGTTGGTGTATTTGTTAGTCATGCAACCCAAAACCCCCAAGTTCAAGATCGAATCGGCCACTGTTCAGCTCAATACAGAAGGCTCTAAGTTAACCGCCCAGTGGGATATCACTCTCCTCGCCACCAACCCCAACCACAACTTCAAATTCTATTACAAACGCGTCCAGGCCAATGTCCGCTACGCGTTCGGTTCTTACTTCCTTTTCACGCTCGTGGAAAAGCCGCGTCCTTCCTTTGTTTTGAACAAAAGTAACCAGACTCGTGTGGAGTTGAAATTGAGTGTGTGGAAGGAATGGCTTGGCCGCAAAGTGGTAGAGGAAATCTCCTCTCGTGAAGTGGTGAGTTTCGGAGTCGAACTCAGCTCTCAGGTGTGGTTTTTGTCTAGACTAATGCCTCCGGGACGTGTTTGGCTAGTCGTCTCCTGTGACGAGGTCGATTTCAGGTTTCCCTGGAATAATCGGACCGGAAAATTGACGAGTCAGTCAGGAAAGTGTGTTGTTAAGTACGGAATGATATATGTCTCTGAATGCTTAGTTACTTCTTCTTTCCTCTTCTTCGCTATTTGGGCTTGTTGCGTTTGTGATTCAAAGCCACGCAGATCAGCACGCGTCGCGCCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

257

Amino Acids

29.47

Weight (kDa)

9.55

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	6 cut(s)	106, 312, 335, 376, 759, 764
AciI	CCGC	7 cut(s)	42, 104, 121, 246, 328, 374, 454
AcoI	YGGCCR	2 cut(s)	207, 451
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	2 cut(s)	252, 460
AflIII	ACRYGT	4 cut(s)	310, 333, 553, 757
AgsI	TTSAA	5 cut(s)	196, 295, 394, 424, 738
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	4 cut(s)	7, 25, 315, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	220, 513, 771
AluI	AGCT	3 cut(s)	220, 513, 771
Alw26I	GTCTC	2 cut(s)	574, 676
AoxI	GGCC	5 cut(s)	67, 101, 207, 318, 451
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	108, 766
AspS9I	GGNCC	2 cut(s)	68, 612
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	2 cut(s)	14, 502
AvaII	GGWCC	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	3 cut(s)	362, 411, 480
BbsI	GAAGAC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	4 cut(s)	9, 27, 317, 601
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	574, 676
BfaI	CTAG	4 cut(s)	99, 534, 563, 768
BisI	GCNGC	4 cut(s)	42, 104, 374, 454
BlsI	GCNGC	4 cut(s)	43, 105, 375, 455
Bme1390I	CCNGG	5 cut(s)	9, 27, 317, 549, 601
Bme18I	GGWCC	1 cut(s)	612
BmgBI	CACGTC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	68, 612
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	5 cut(s)	9, 27, 317, 549, 601
BmrI	ACTGGG	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	109
BplI	GAGNNNNNCTC	4 cut(s)	458, 490, 492, 524
BpmI	CTGGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	25, 599
BsaWI	WCCGGW	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 460
Bse1I	ACTGG	2 cut(s)	60, 250
BseBI	CCWGG	4 cut(s)	9, 27, 317, 601
BseDI	CCNNGG	2 cut(s)	25, 599
BseLI	CCNNNNNNNGG	2 cut(s)	252, 460
BseMII	CTCAG	2 cut(s)	523, 530
BseNI	ACTGG	2 cut(s)	60, 250
BseRI	GAGGAG	2 cut(s)	257, 466
Bsh1236I	CGCG	6 cut(s)	106, 312, 335, 376, 759, 764
BshFI	GGCC	5 cut(s)	69, 103, 209, 320, 453
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	548, 615
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	252, 460
BsmAI	GTCTC	2 cut(s)	574, 676
BsmBI	CGTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	5 cut(s)	69, 103, 209, 320, 453
Bsp143I	GATC	2 cut(s)	198, 749
BspACI	CCGC	7 cut(s)	42, 104, 121, 246, 328, 374, 454
BspANI	GGCC	5 cut(s)	69, 103, 209, 320, 453
BspCNI	CTCAG	2 cut(s)	522, 529
BspFNI	CGCG	6 cut(s)	106, 312, 335, 376, 759, 764
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	60, 250
BssECI	CCNNGG	2 cut(s)	25, 599
BssMI	GATC	2 cut(s)	198, 749
BssSI	CACGAG	3 cut(s)	362, 411, 480
Bst2BI	CACGAG	3 cut(s)	362, 411, 480
Bst2UI	CCWGG	4 cut(s)	9, 27, 317, 601
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	4 cut(s)	237, 509, 516, 682
BstFNI	CGCG	6 cut(s)	106, 312, 335, 376, 759, 764
BstHHI	GCGC	2 cut(s)	108, 766
BstKTI	GATC	2 cut(s)	201, 752
BstMAI	GTCTC	2 cut(s)	574, 676
BstMBI	GATC	2 cut(s)	198, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 761
BstNI	CCWGG	4 cut(s)	9, 27, 317, 601
BstSCI	CCNGG	5 cut(s)	7, 25, 315, 547, 599
BstUI	CGCG	6 cut(s)	106, 312, 335, 376, 759, 764
BstV2I	GAAGAC	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	69, 103, 209, 320, 453
BtrI	CACGTC	1 cut(s)	554
BtsIMutI	CAGTG	3 cut(s)	53, 210, 257
Cac8I	GCNNGC	1 cut(s)	757
CfoI	GCGC	2 cut(s)	108, 766
Cfr13I	GGNCC	2 cut(s)	68, 612
CpoI	CGGWCCG	1 cut(s)	612
CseI	GACGC	3 cut(s)	301, 365, 748
Csp6I	GTAC	1 cut(s)	655
CspI	CGGWCCG	1 cut(s)	612
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	4 cut(s)	237, 509, 516, 682
DpnI	GATC	2 cut(s)	200, 751
DpnII	GATC	2 cut(s)	198, 749
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	207, 451
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	612
EcoRII	CCWGG	4 cut(s)	7, 25, 315, 599
EcoRV	GATATC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	1 cut(s)	175
FaiI	YATR	6 cut(s)	15, 137, 139, 173, 667, 669
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	1 cut(s)	171
FauNDI	CATATG	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	42, 104, 374, 454
Fsp4HI	GCNGC	4 cut(s)	42, 104, 374, 454
FspBI	CTAG	4 cut(s)	99, 534, 563, 768
GlaI	GCGC	2 cut(s)	107, 765
GluI	GCNGC	4 cut(s)	42, 104, 374, 454
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	5 cut(s)	69, 103, 209, 320, 453
HapII	CCGG	2 cut(s)	548, 615
HgaI	GACGC	3 cut(s)	301, 365, 748
HhaI	GCGC	2 cut(s)	108, 766
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	2 cut(s)	106, 764
HinP1I	GCGC	2 cut(s)	106, 764
HincII	GTYRAC	2 cut(s)	32, 243
HindII	GTYRAC	2 cut(s)	32, 243
HinfI	GANTC	5 cut(s)	203, 409, 501, 628, 734
HpaI	GTTAAC	1 cut(s)	243
HpaII	CCGG	2 cut(s)	548, 615
HphI	GGTGA	2 cut(s)	14, 502
Hpy166II	GTNNAC	3 cut(s)	32, 64, 243
Hpy188I	TCNGA	3 cut(s)	500, 612, 676
Hpy188III	TCNNGA	5 cut(s)	77, 196, 482, 534, 636
Hpy8I	GTNNAC	3 cut(s)	32, 64, 243
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	3 cut(s)	224, 390, 433
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 761
HpyF3I	CTNAG	4 cut(s)	237, 509, 516, 682
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	2 cut(s)	106, 764
KspAI	GTTAAC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	198, 749
MaeI	CTAG	4 cut(s)	99, 534, 563, 768
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	401, 575, 685
MalI	GATC	2 cut(s)	200, 751
MboI	GATC	2 cut(s)	198, 749
MboII	GAAGA	4 cut(s)	109, 684, 694, 697
MluCI	AATT	4 cut(s)	72, 296, 425, 620
MluI	ACGCGT	3 cut(s)	310, 333, 757
MlyI	GAGTC	3 cut(s)	403, 510, 637
MnlI	CCTC	8 cut(s)	52, 121, 278, 460, 487, 555, 574, 710
MseI	TTAA	2 cut(s)	242, 651
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	2 cut(s)	548, 615
MspR9I	CCNGG	5 cut(s)	9, 27, 317, 549, 601
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	4 cut(s)	9, 27, 317, 601
MvnI	CGCG	6 cut(s)	106, 312, 335, 376, 759, 764
MwoI	GCNNNNNNNGC	2 cut(s)	716, 761
NciI	CCSGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	2 cut(s)	198, 749
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	575
OliI	CACNNNNGTG	1 cut(s)	362
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	2 cut(s)	203, 734
PflFI	GACNNNGTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	43, 105, 375, 455
PleI	GAGTC	3 cut(s)	403, 509, 636
PpsI	GAGTC	3 cut(s)	403, 509, 636
Psp6I	CCWGG	4 cut(s)	7, 25, 315, 599
PspGI	CCWGG	4 cut(s)	7, 25, 315, 599
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	68, 612
PsyI	GACNNNGTC	1 cut(s)	581
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	362
Rsr2I	CGGWCCG	1 cut(s)	612
RsrII	CGGWCCG	1 cut(s)	612
SaqAI	TTAA	2 cut(s)	242, 651
SatI	GCNGC	4 cut(s)	42, 104, 374, 454
Sau3AI	GATC	2 cut(s)	198, 749
Sau96I	GGNCC	2 cut(s)	68, 612
SchI	GAGTC	3 cut(s)	403, 510, 637
ScrFI	CCNGG	5 cut(s)	9, 27, 317, 549, 601
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	72, 296, 425, 620
SsiI	CCGC	7 cut(s)	42, 104, 121, 246, 328, 374, 454
SspMI	CTAG	4 cut(s)	99, 534, 563, 768
StyD4I	CCNGG	5 cut(s)	7, 25, 315, 547, 599
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	4 cut(s)	36, 201, 504, 585
TasI	AATT	4 cut(s)	72, 296, 425, 620
TauI	GCSGC	4 cut(s)	44, 106, 376, 456
TfiI	GAWTC	2 cut(s)	203, 734
Tru1I	TTAA	2 cut(s)	242, 651
Tru9I	TTAA	2 cut(s)	242, 651
TscAI	CASTG	3 cut(s)	60, 217, 257
TseFI	GTSAC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	2 cut(s)	103, 672
TspRI	CASTG	3 cut(s)	60, 217, 257
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	4 cut(s)	99, 534, 563, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.