Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006382

Physical Location & Seq

Genomic Coordinates Reverse (-)

72983392 .. 72984096

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTCAACTGACTCCACTCGGAGCCGGCCTAACTCCAGGCAACAACCCCCACATCATTAGGCTCACTAAGCGCCCCACCGTCGTCCGTCTCTGCAGCCTCGTCTTCCTCATCTTCCTGGTTTTGGCCATCTATTTTTTTATCACCAGGGATCCCACACTCCCCAAGTTCAAGGTCGAATCGGCCACCGTGACCCAACTCAACGTTGAAGGCTCCAAGTTAACTGCCACGTGGGACTTCACTCTCCTTGCCACCAACCCTAGCCGCAAACTCGAACCCTACTACAGCCGTGTCCAGGCCGGGGTCCGCTACCGGGATAGGAGCCGCGATGTTTACACCCTCGTGAAAAAGCCGTTCCCTTCGTTTGTTCTGAGCCGGAGGAACCAGACACGTGTCGGTTTGAGACTCGGAGTTTGGAGGCAACCGGGGAGGCAAGTTGCGCAGGGAATCTCCGGCGAGAGGAAGAGTGAGTTGGTGAGTTTCGGAGTCAGACTCCTGGCTAAGGTGTGGTTTGAGTACTCTAGGATATTGCCGGCGGAACGAGGTTGGCTGCTGGTCTCCTGCGATAGGGTTGATTTTGATTTTTCCGGGAAGAATGGGACCGGCGAAATAACGAGTCGGTCTGGGCAGTGCGATGTTGACTACTACCCAATACTTCCCTTGGGTAGTACTATCAGTAAGGATGAGTTGGCAAATGCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

234

Amino Acids

26.36

Weight (kDa)

10.05

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006382)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15100 FvH4_1g17951 FvH4_6g08860 FvH4_6g08860
rosa_laevigata	RLG00000017667 RLG00000025108 RLG00000025109
rosa_multiflora	Rmu_sc0002372.1_g000024 Rmu_sc0002435.1_g000018 Rmu_sc0009208.1_g000008 Rmu_sc0014208.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135170 Rroxscaffold_2G00135390 Rroxscaffold_6G00420470
rosa_rugosa	Rorug02G0152600 Rorug03G0034000 Rorug03G0034000
rosa_samantha	Rh2AG201700 Rh2BG214600 Rh2DG209000 Rh3AG091900 Rh3BG094900 Rh3CG095700 Rh3DG095500
rosa_wichuraiana	Rw2G016050 Rw2G016110 Rw3G007870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	441
AccII	CGCG	1 cut(s)	327
AciI	CCGC	4 cut(s)	265, 307, 325, 536
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	2 cut(s)	146, 159
AcoI	YGGCCR	2 cut(s)	126, 183
AcvI	CACGTG	2 cut(s)	231, 392
AfaI	GTAC	2 cut(s)	518, 670
AfiI	CCNNNNNNNGG	7 cut(s)	124, 295, 301, 313, 459, 502, 567
AflIII	ACRYGT	2 cut(s)	389, 391
AgsI	TTSAA	2 cut(s)	172, 209
AjnI	CCWGG	5 cut(s)	37, 117, 146, 294, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AleI	CACNNNNGTG	1 cut(s)	341
Alw26I	GTCTC	3 cut(s)	95, 397, 562
AlwI	GGATC	2 cut(s)	146, 159
AoxI	GGCC	4 cut(s)	28, 126, 183, 297
ApeKI	GCWGC	2 cut(s)	96, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AspLEI	GCGC	2 cut(s)	75, 442
AspS9I	GGNCC	2 cut(s)	304, 600
AsuC2I	CCSGG	4 cut(s)	301, 314, 426, 589
AsuHPI	GGTGA	2 cut(s)	136, 487
AvaII	GGWCC	2 cut(s)	304, 600
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	341
BbrPI	CACGTG	2 cut(s)	231, 392
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	108, 537
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	273, 337
BciT130I	CCWGG	5 cut(s)	39, 119, 148, 296, 497
BcnI	CCSGG	4 cut(s)	301, 314, 426, 589
BcoDI	GTCTC	3 cut(s)	95, 397, 562
BfaI	CTAG	2 cut(s)	261, 522
BfmI	CTRYAG	2 cut(s)	94, 283
BfoI	RGCGCY	1 cut(s)	76
BisI	GCNGC	4 cut(s)	97, 265, 325, 551
BlsI	GCNGC	4 cut(s)	98, 266, 326, 552
BmcAI	AGTACT	2 cut(s)	518, 670
Bme1390I	CCNGG	9 cut(s)	39, 119, 148, 296, 301, 314, 426, 497, 589
Bme18I	GGWCC	2 cut(s)	304, 600
BmgT120I	GGNCC	2 cut(s)	304, 600
BmiI	GGNNCC	7 cut(s)	25, 153, 214, 305, 323, 383, 601
BmrFI	CCNGG	9 cut(s)	39, 119, 148, 296, 301, 314, 426, 497, 589
BoxI	GACNNNNGTC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	477, 509
BpmI	CTGGAG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	501
BpuMI	CCSGG	4 cut(s)	301, 314, 426, 589
BsaAI	YACGTR	2 cut(s)	231, 392
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	4 cut(s)	147, 300, 425, 660
Bsc4I	CCNNNNNNNGG	7 cut(s)	124, 295, 301, 313, 459, 502, 567
Bse118I	RCCGGY	3 cut(s)	26, 532, 602
BseBI	CCWGG	5 cut(s)	39, 119, 148, 296, 497
BseDI	CCNNGG	4 cut(s)	147, 300, 425, 660
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	7 cut(s)	124, 295, 301, 313, 459, 502, 567
BseMII	CTCAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	108, 537
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	4 cut(s)	30, 128, 185, 299
BsiSI	CCGG	9 cut(s)	27, 300, 313, 376, 425, 453, 533, 588, 603
BslFI	GGGAC	2 cut(s)	248, 613
BslI	CCNNNNNNNGG	7 cut(s)	124, 295, 301, 313, 459, 502, 567
BsmAI	GTCTC	3 cut(s)	95, 397, 562
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	248, 613
BsnI	GGCC	4 cut(s)	30, 128, 185, 299
Bso31I	GGTCTC	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	4 cut(s)	265, 307, 325, 536
BspANI	GGCC	4 cut(s)	30, 128, 185, 299
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	7 cut(s)	25, 153, 214, 305, 323, 383, 601
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	2 cut(s)	146, 159
BspTNI	GGTCTC	1 cut(s)	562
BsrFI	RCCGGY	3 cut(s)	26, 532, 602
BssAI	RCCGGY	3 cut(s)	26, 532, 602
BssECI	CCNNGG	4 cut(s)	147, 300, 425, 660
BssMI	GATC	1 cut(s)	151
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	5 cut(s)	39, 119, 148, 296, 497
Bst4CI	ACNGT	2 cut(s)	82, 190
Bst6I	CTCTTC	1 cut(s)	458
BstBAI	YACGTR	2 cut(s)	231, 392
BstC8I	GCNNGC	2 cut(s)	28, 534
BstDEI	CTNAG	3 cut(s)	69, 371, 501
BstENI	CCTNNNNNAGG	2 cut(s)	500, 565
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 442
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	3 cut(s)	95, 397, 562
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 439
BstNI	CCWGG	5 cut(s)	39, 119, 148, 296, 497
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSCI	CCNGG	9 cut(s)	37, 117, 146, 294, 299, 312, 424, 495, 587
BstSFI	CTRYAG	2 cut(s)	94, 283
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	108, 537
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	30, 128, 185, 299
BtgZI	GCGATG	2 cut(s)	342, 648
BtsCI	GGATG	1 cut(s)	688
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	1 cut(s)	635
Cac8I	GCNNGC	2 cut(s)	28, 534
CfoI	GCGC	2 cut(s)	75, 442
Cfr10I	RCCGGY	3 cut(s)	26, 532, 602
Cfr13I	GGNCC	2 cut(s)	304, 600
Csp6I	GTAC	2 cut(s)	517, 669
CviQI	GTAC	2 cut(s)	517, 669
DdeI	CTNAG	3 cut(s)	69, 371, 501
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	2 cut(s)	126, 183
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	304, 600
Eco72I	CACGTG	2 cut(s)	231, 392
EcoNI	CCTNNNNNAGG	2 cut(s)	500, 565
EcoRII	CCWGG	5 cut(s)	37, 117, 146, 294, 495
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	95
FaiI	YATR	2 cut(s)	701, 703
FaqI	GGGAC	2 cut(s)	248, 613
Fnu4HI	GCNGC	4 cut(s)	97, 265, 325, 551
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	4 cut(s)	97, 265, 325, 551
FspBI	CTAG	2 cut(s)	261, 522
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	2 cut(s)	74, 441
GluI	GCNGC	4 cut(s)	97, 265, 325, 551
GsuI	CTGGAG	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	4 cut(s)	30, 128, 185, 299
HapII	CCGG	9 cut(s)	27, 300, 313, 376, 425, 453, 533, 588, 603
HhaI	GCGC	2 cut(s)	75, 442
Hin6I	GCGC	2 cut(s)	73, 440
HinP1I	GCGC	2 cut(s)	73, 440
HincII	GTYRAC	2 cut(s)	222, 640
HindII	GTYRAC	2 cut(s)	222, 640
HinfI	GANTC	7 cut(s)	13, 179, 405, 447, 486, 492, 616
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	9 cut(s)	27, 300, 313, 376, 425, 453, 533, 588, 603
HphI	GGTGA	2 cut(s)	136, 487
Hpy166II	GTNNAC	3 cut(s)	222, 334, 640
Hpy188I	TCNGA	5 cut(s)	23, 372, 410, 485, 491
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	222, 334, 640
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	203, 369
HpyCH4III	ACNGT	2 cut(s)	82, 190
HpyCH4IV	ACGT	3 cut(s)	204, 230, 391
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 439
HpyF3I	CTNAG	3 cut(s)	69, 371, 501
HpySE526I	ACGT	3 cut(s)	204, 230, 391
HspAI	GCGC	2 cut(s)	73, 440
KroI	GCCGGC	2 cut(s)	26, 532
KroNI	GCCGGC	2 cut(s)	28, 534
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	3 cut(s)	23, 218, 321
Lsp1109I	GCAGC	2 cut(s)	108, 537
MaeI	CTAG	2 cut(s)	261, 522
MaeII	ACGT	3 cut(s)	204, 230, 391
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	4 cut(s)	97, 106, 475, 604
MflI	RGATCY	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	5 cut(s)	7, 399, 486, 495, 625
MnlI	CCTC	8 cut(s)	110, 119, 350, 372, 411, 423, 453, 536
Mox20I	TGGCCA	1 cut(s)	128
MroNI	GCCGGC	2 cut(s)	26, 532
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	9 cut(s)	27, 300, 313, 376, 425, 453, 533, 588, 603
MspR9I	CCNGG	9 cut(s)	39, 119, 148, 296, 301, 314, 426, 497, 589
MvaI	CCWGG	5 cut(s)	39, 119, 148, 296, 497
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	70, 439
NaeI	GCCGGC	2 cut(s)	28, 534
NciI	CCSGG	4 cut(s)	301, 314, 426, 589
NdeII	GATC	1 cut(s)	151
NgoMIV	GCCGGC	2 cut(s)	26, 532
NlaIV	GGNNCC	7 cut(s)	25, 153, 214, 305, 323, 383, 601
NmuCI	GTSAC	1 cut(s)	190
NsbI	TGCGCA	1 cut(s)	441
OliI	CACNNNNGTG	1 cut(s)	341
PdiI	GCCGGC	2 cut(s)	28, 534
PfeI	GAWTC	2 cut(s)	179, 447
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	98, 266, 326, 552
PleI	GAGTC	5 cut(s)	7, 399, 486, 494, 624
PmaCI	CACGTG	2 cut(s)	231, 392
PmlI	CACGTG	2 cut(s)	231, 392
PpsI	GAGTC	5 cut(s)	7, 399, 486, 494, 624
Ppu21I	YACGTR	2 cut(s)	231, 392
PshAI	GACNNNNGTC	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	204
Psp6I	CCWGG	5 cut(s)	37, 117, 146, 294, 495
PspCI	CACGTG	2 cut(s)	231, 392
PspGI	CCWGG	5 cut(s)	37, 117, 146, 294, 495
PspN4I	GGNNCC	7 cut(s)	25, 153, 214, 305, 323, 383, 601
PspPI	GGNCC	2 cut(s)	304, 600
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	2 cut(s)	518, 670
RsaNI	GTAC	2 cut(s)	517, 669
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	4 cut(s)	97, 265, 325, 551
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	304, 600
ScaI	AGTACT	2 cut(s)	518, 670
SchI	GAGTC	5 cut(s)	7, 399, 486, 495, 625
ScrFI	CCNGG	9 cut(s)	39, 119, 148, 296, 301, 314, 426, 497, 589
SetI	ASST	6 cut(s)	177, 207, 233, 394, 507, 547
SfcI	CTRYAG	2 cut(s)	94, 283
SinI	GGWCC	2 cut(s)	304, 600
SmiMI	CAYNNNNRTG	1 cut(s)	341
SsiI	CCGC	4 cut(s)	265, 307, 325, 536
SspMI	CTAG	2 cut(s)	261, 522
StyD4I	CCNGG	9 cut(s)	37, 117, 146, 294, 299, 312, 424, 495, 587
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	82, 190
TaiI	ACGT	3 cut(s)	207, 233, 394
TaqI	TCGA	2 cut(s)	177, 273
TaqII	GACCGA	1 cut(s)	609
TatI	WGTACW	2 cut(s)	516, 668
TauI	GCSGC	2 cut(s)	267, 327
TfiI	GAWTC	2 cut(s)	179, 447
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	635
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	96, 550
Tsp45I	GTSAC	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	635
VpaK11BI	GGWCC	2 cut(s)	304, 600
XagI	CCTNNNNNAGG	2 cut(s)	500, 565
XspI	CTAG	2 cut(s)	261, 522
ZrmI	AGTACT	2 cut(s)	518, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.