FvH4_1g15860

membrane

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
9021871 .. 9024937
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15860.t1

Sequence Viewer

Length: 1743 bp
ATGGTGGCCTTCCTTTCTCTCTGTGATCATTTTTTTGCTATGGAGTCGTCACAAACTTGGAGCTGGAGCTCTGGGCTGAAAGGTCTCTATGTGGTGTTTGCTTTCATTTCTGCTCTCTTTCTGGGTTGTCTCAAAGGTGTTCTTGTTGGTCCTGTTTCTGCGCTAATACTGATCATAGGGAATGTGGGAATCATTTTGGGGTTGTTTCCTGCACATGTTGCCTGGACAATCTATACTCTTATAAAGATTGATAGATTTGATATACCCCTTAAAGTTGCAATCTTGTGTGGCTTGCCTGCTCTATTTGGTATCTGGTTGGGTTTGAGCATAGCTGGGAGTGTTCTTGTGGGATTGGGCTATGGGTTCTTTACTCCTTGGGTTTCTACCTTTGAGGCTTTCAGGCATGGAAATGAATTGAATAAGTTCAAACATTGTGTTGTGGATGGAACTTCGGAAACTGTTAAAGGAAGCTGCACTGTAGTTAGAGACTTTGCAGACTTGTGTTACCATTCGTATCCACTCTACTTGAAGGAGTTGCGTGAATCCCCTGCTTCAGAAGAAGTTCGAACTCTAAGGTTGATTCATATACCAGCATGTATACTAGTTGGTGTTTTGGGGCTAATGGTGGAGATTCCTCTTTACACTGCAATTGTTGTTGTGAAGAGTCCATATATGCTATTTAAGGGCTGGTATCGACTGATTTACGATATGATTAGTCGAGAAGGACCATTTCTTGAAGTAGCTTGCATCCCTATTGCTGGCTTGACAATTCTTATGTGGCCAATTGTGGTTGTTGGAAGCATCATACTGACAGTCATTGGGAGCATTTTTGTTGGATTATATGCAGCAATTGTAGTATATCAGGAAAGATCTTTCAAAAGAGGTGTGACTTACGTGATTGCAATGGTTGCTGAGTTTGATGAGTACACAAATGACTGGTTATATCTTCGAGAGGGCACCATCTTTCCGAAGCCCCATTATCGAAAAAGATCTGTCTCTCAACCATCAGAGCTCTCTGTCCGAGGAAGGCAAGCAGCTGGAGGTAAGATCAGTTCTGCAACTATGGAGGCACCTGCAATGCATATGCCACGTTTGGCCAACTCAAGATCAGTAAGAGAGTCTATACATCAAGTAAAAATGGTACAGATATGGGGAAATATGATGAGAACCTGTGAACTGAGGGGTAAGCAACTGTTGGATGCGGAAGCAATAACTCCAAATGATCTCTATGAATGGTTGAAATGTGAGAACAGCAATGAAGGGAGCATCATTAGTGTTGGTTTGCCTTGTTATTCATTATTGTACACTCTTCTCTGCTCGATCGGATCAAATTCACCTGGTTTACTGCTGCTTGATGATGTTGAAGTTACCTATATTAATAGACCACATGACAAACTGATGGACTGGTTTTTTAATCCTATAATGGTCCTCAAGGAACAAGTCAAGGTCATAAATTTGGAAGAGTGTGAGGTGAGATTTCTGGAGAAAGTACTACTTTTCAGAAGCAATACACAGCGCATGGAGGCTTGGGATAATGGAAGCTTAATACCTCAAGATGCTCTAAGAGCTGCTCAAATCCAAGGCATTAGTAGAAGGATGATTGGGATAACGAGAGGTGTCTCAAAATTTCCCACTTATAGGAGGAGATTTCACCAAGTAGTGAAGAACTTGATCACATATTCCATACAGGAGGCTACCATTCCACTCGGTTCCATTGAATCTACCTCCATCGAAGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

581

Amino Acids

65.03

Weight (kDa)

8.13

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AarI CACCTGC 1 cut(s) 1081
Acc36I ACCTGC 1 cut(s) 1081
AccB1I GGYRCC 2 cut(s) 956, 1069
AccI GTMKAC 1 cut(s) 598
AciI CCGC 1 cut(s) 1202
AclWI GGATC 1 cut(s) 1333
AcoI YGGCCR 2 cut(s) 779, 1095
AcsI RAATTY 3 cut(s) 1330, 1453, 1625
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 4 cut(s) 926, 1143, 1304, 1491
AfiI CCNNNNNNNGG 2 cut(s) 758, 1638
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 8 cut(s) 418, 427, 529, 737, 877, 1240, 1364, 1718
AhlI ACTAGT 1 cut(s) 601
AjnI CCWGG 2 cut(s) 221, 1336
AluBI AGCT 9 cut(s) 63, 69, 332, 471, 743, 1012, 1037, 1542, 1568
AluI AGCT 9 cut(s) 63, 69, 332, 471, 743, 1012, 1037, 1542, 1568
Alw21I GWGCWC 2 cut(s) 71, 1014
Alw26I GTCTC 5 cut(s) 89, 134, 480, 1000, 1624
AlwI GGATC 1 cut(s) 1333
AoxI GGCC 3 cut(s) 6, 779, 1095
ApeKI GCWGC 5 cut(s) 471, 845, 1034, 1348, 1568
ApoI RAATTY 3 cut(s) 1330, 1453, 1625
AseI ATTAAT 1 cut(s) 1377
Asp700I GAANNNNTTC 2 cut(s) 422, 561
AspLEI GCGC 2 cut(s) 163, 1518
AspS9I GGNCC 3 cut(s) 149, 725, 1426
AsuHPI GGTGA 3 cut(s) 1326, 1483, 1643
AsuII TTCGAA 1 cut(s) 565
AvaII GGWCC 3 cut(s) 149, 725, 1426
BaeGI GKGCMC 1 cut(s) 959
BalI TGGCCA 2 cut(s) 781, 1097
BanI GGYRCC 2 cut(s) 956, 1069
BanII GRGCYC 2 cut(s) 71, 1014
Bbv12I GWGCWC 2 cut(s) 71, 1014
BbvI GCAGC 5 cut(s) 458, 857, 1046, 1335, 1555
BccI CCATC 5 cut(s) 437, 968, 1012, 1393, 1736
BciT130I CCWGG 2 cut(s) 223, 1338
BciVI GTATCC 1 cut(s) 525
BclI TGATCA 3 cut(s) 25, 171, 1671
BcoDI GTCTC 5 cut(s) 89, 134, 480, 1000, 1624
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 1 cut(s) 602
BfmI CTRYAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 1081
BfuI GTATCC 1 cut(s) 525
BglII AGATCT 2 cut(s) 869, 989
BisI GCNGC 5 cut(s) 472, 846, 1035, 1349, 1569
BlsI GCNGC 5 cut(s) 473, 847, 1036, 1350, 1570
BmcAI AGTACT 1 cut(s) 1491
Bme1390I CCNGG 2 cut(s) 223, 1338
Bme18I GGWCC 3 cut(s) 149, 725, 1426
BmgT120I GGNCC 3 cut(s) 149, 725, 1426
BmiI GGNNCC 3 cut(s) 958, 1071, 1711
BmrFI CCNGG 2 cut(s) 223, 1338
BmsI GCATC 5 cut(s) 756, 810, 1189, 1275, 1546
BpmI CTGGAG 3 cut(s) 85, 1059, 1502
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 3 cut(s) 1087, 1415, 1536
BsaAI YACGTR 1 cut(s) 895
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 374, 1021, 1579
Bsc4I CCNNNNNNNGG 2 cut(s) 758, 1638
Bse1I ACTGG 2 cut(s) 941, 1409
Bse3DI GCAATG 3 cut(s) 909, 1083, 1261
BseBI CCWGG 2 cut(s) 223, 1338
BseDI CCNNGG 3 cut(s) 374, 1021, 1579
BseGI GGATG 4 cut(s) 448, 747, 1204, 1602
BseLI CCNNNNNNNGG 2 cut(s) 758, 1638
BseMI GCAATG 3 cut(s) 909, 1083, 1261
BseMII CTCAG 2 cut(s) 903, 1169
BseNI ACTGG 2 cut(s) 941, 1409
BseRI GAGGAG 1 cut(s) 1657
BseSI GKGCMC 1 cut(s) 959
BseXI GCAGC 5 cut(s) 458, 857, 1046, 1335, 1555
BseYI CCCAGC 1 cut(s) 332
BsgI GTGCAG 2 cut(s) 195, 457
Bsh1285I CGRYCG 1 cut(s) 1323
BshFI GGCC 3 cut(s) 8, 781, 1097
BshNI GGYRCC 2 cut(s) 956, 1069
BsiEI CGRYCG 1 cut(s) 1323
BsiHKAI GWGCWC 2 cut(s) 71, 1014
BslI CCNNNNNNNGG 2 cut(s) 758, 1638
BsmAI GTCTC 5 cut(s) 89, 134, 480, 1000, 1624
BsnI GGCC 3 cut(s) 8, 781, 1097
Bso31I GGTCTC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 565
Bsp1286I GDGCHC 3 cut(s) 71, 959, 1014
Bsp1407I TGTACA 1 cut(s) 1302
BspACI CCGC 1 cut(s) 1202
BspANI GGCC 3 cut(s) 8, 781, 1097
BspCNI CTCAG 2 cut(s) 904, 1170
BspLI GGNNCC 3 cut(s) 958, 1071, 1711
BspMI ACCTGC 1 cut(s) 1081
BspPI GGATC 1 cut(s) 1333
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 2 cut(s) 956, 1069
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 3 cut(s) 909, 1083, 1261
BsrGI TGTACA 1 cut(s) 1302
BsrI ACTGG 2 cut(s) 941, 1409
BssECI CCNNGG 3 cut(s) 374, 1021, 1579
BssNAI GTATAC 1 cut(s) 599
BssT1I CCWWGG 2 cut(s) 374, 1579
Bst1107I GTATAC 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 223, 1338
Bst4CI ACNGT 4 cut(s) 460, 478, 814, 1194
Bst6I CTCTTC 3 cut(s) 656, 1314, 1455
BstAPI GCANNNNNTGC 2 cut(s) 218, 908
BstAUI TGTACA 1 cut(s) 1302
BstBAI YACGTR 1 cut(s) 895
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 5 cut(s) 293, 297, 745, 760, 1032
BstDEI CTNAG 4 cut(s) 572, 912, 1178, 1562
BstF5I GGATG 4 cut(s) 448, 747, 1204, 1602
BstHHI GCGC 2 cut(s) 163, 1518
BstMAI GTCTC 5 cut(s) 89, 134, 480, 1000, 1624
BstMCI CGRYCG 1 cut(s) 1323
BstMWI GCNNNNNNNGC 3 cut(s) 218, 908, 1565
BstNI CCWGG 2 cut(s) 223, 1338
BstNSI RCATGY 2 cut(s) 218, 597
BstSCI CCNGG 2 cut(s) 221, 1336
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 959
BstV1I GCAGC 5 cut(s) 458, 857, 1046, 1335, 1555
BstX2I RGATCY 2 cut(s) 869, 989
BstYI RGATCY 2 cut(s) 869, 989
BstZ17I GTATAC 1 cut(s) 599
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 3 cut(s) 8, 781, 1097
BtsCI GGATG 4 cut(s) 448, 747, 1204, 1602
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 2 cut(s) 474, 642
BveI ACCTGC 1 cut(s) 1081
Cac8I GCNNGC 5 cut(s) 293, 297, 745, 760, 1032
CfoI GCGC 2 cut(s) 163, 1518
Cfr13I GGNCC 3 cut(s) 149, 725, 1426
CsiI ACCWGGT 1 cut(s) 1336
Csp6I GTAC 4 cut(s) 925, 1142, 1303, 1490
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 5 cut(s) 215, 404, 594, 1388, 1519
CviQI GTAC 4 cut(s) 925, 1142, 1303, 1490
DdeI CTNAG 4 cut(s) 572, 912, 1178, 1562
EaeI YGGCCR 2 cut(s) 779, 1095
Eam1104I CTCTTC 3 cut(s) 656, 1314, 1455
EarI CTCTTC 3 cut(s) 656, 1314, 1455
Ecl136II GAGCTC 2 cut(s) 69, 1012
Eco130I CCWWGG 2 cut(s) 374, 1579
Eco24I GRGCYC 2 cut(s) 71, 1014
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 3 cut(s) 149, 725, 1426
Eco53kI GAGCTC 2 cut(s) 69, 1012
Eco57I CTGAAG 1 cut(s) 537
EcoICRI GAGCTC 2 cut(s) 69, 1012
EcoRII CCWGG 2 cut(s) 221, 1336
EcoT14I CCWWGG 2 cut(s) 374, 1579
EcoT22I ATGCAT 1 cut(s) 1083
EcoT38I GRGCYC 2 cut(s) 71, 1014
ErhI CCWWGG 2 cut(s) 374, 1579
FaeI CATG 5 cut(s) 218, 407, 597, 1391, 1522
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 1479, 1511
FatI CATG 5 cut(s) 214, 403, 593, 1387, 1518
FauNDI CATATG 1 cut(s) 1083
FbaI TGATCA 3 cut(s) 25, 171, 1671
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 5 cut(s) 472, 846, 1035, 1349, 1569
FokI GGATG 4 cut(s) 455, 734, 1211, 1609
FriOI GRGCYC 2 cut(s) 71, 1014
Fsp4HI GCNGC 5 cut(s) 472, 846, 1035, 1349, 1569
FspBI CTAG 1 cut(s) 602
GlaI GCGC 2 cut(s) 162, 1517
GluI GCNGC 5 cut(s) 472, 846, 1035, 1349, 1569
GsaI CCCAGC 1 cut(s) 336
GsuI CTGGAG 3 cut(s) 85, 1059, 1502
HaeIII GGCC 3 cut(s) 8, 781, 1097
HhaI GCGC 2 cut(s) 163, 1518
Hin1II CATG 5 cut(s) 218, 407, 597, 1391, 1522
Hin6I GCGC 2 cut(s) 161, 1516
HinP1I GCGC 2 cut(s) 161, 1516
HindIII AAGCTT 1 cut(s) 1540
HinfI GANTC 8 cut(s) 44, 189, 542, 580, 631, 664, 1118, 1718
HphI GGTGA 3 cut(s) 1326, 1483, 1643
Hpy166II GTNNAC 5 cut(s) 599, 927, 1175, 1305, 1343
Hpy188I TCNGA 7 cut(s) 454, 556, 969, 1009, 1022, 1325, 1502
Hpy188III TCNNGA 7 cut(s) 719, 734, 863, 950, 1104, 1481, 1553
Hpy8I GTNNAC 5 cut(s) 599, 927, 1175, 1305, 1343
HpyAV CCTTC 6 cut(s) 19, 523, 716, 1020, 1253, 1587
HpyCH4III ACNGT 4 cut(s) 460, 478, 814, 1194
HpyCH4IV ACGT 2 cut(s) 894, 1090
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 908, 1565
HpyF3I CTNAG 4 cut(s) 572, 912, 1178, 1562
HpySE526I ACGT 2 cut(s) 894, 1090
Hsp92II CATG 5 cut(s) 218, 407, 597, 1391, 1522
HspAI GCGC 2 cut(s) 161, 1516
Ksp22I TGATCA 3 cut(s) 25, 171, 1671
LmnI GCTCC 4 cut(s) 60, 66, 822, 1263
Lsp1109I GCAGC 5 cut(s) 458, 857, 1046, 1335, 1555
LweI GCATC 5 cut(s) 756, 810, 1189, 1275, 1546
MabI ACCWGGT 1 cut(s) 1336
MaeI CTAG 1 cut(s) 602
MaeII ACGT 2 cut(s) 894, 1090
MaeIII GTNAC 4 cut(s) 48, 503, 886, 1366
MboII GAAGA 6 cut(s) 569, 673, 938, 1301, 1472, 1675
MfeI CAATTG 3 cut(s) 648, 783, 849
MflI RGATCY 2 cut(s) 869, 989
MhlI GDGCHC 3 cut(s) 71, 959, 1014
MlsI TGGCCA 2 cut(s) 781, 1097
MluCI AATT 8 cut(s) 413, 648, 768, 783, 849, 1330, 1453, 1625
MluNI TGGCCA 2 cut(s) 781, 1097
MlyI GAGTC 3 cut(s) 53, 673, 1127
MmeI TCCRAC 3 cut(s) 775, 814, 1176
Mox20I TGGCCA 2 cut(s) 781, 1097
Mph1103I ATGCAT 1 cut(s) 1083
MroXI GAANNNNTTC 2 cut(s) 422, 561
MscI TGGCCA 2 cut(s) 781, 1097
MseI TTAA 6 cut(s) 270, 462, 681, 1377, 1413, 1544
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 2 cut(s) 781, 1097
MspA1I CMGCKG 1 cut(s) 1037
MspR9I CCNGG 2 cut(s) 223, 1338
MunI CAATTG 3 cut(s) 648, 783, 849
MvaI CCWGG 2 cut(s) 223, 1338
MwoI GCNNNNNNNGC 3 cut(s) 218, 908, 1565
NdeI CATATG 1 cut(s) 1083
NlaIII CATG 5 cut(s) 218, 407, 597, 1391, 1522
NlaIV GGNNCC 3 cut(s) 958, 1071, 1711
NmuCI GTSAC 2 cut(s) 48, 886
NsiI ATGCAT 1 cut(s) 1083
NspI RCATGY 2 cut(s) 218, 597
NspV TTCGAA 1 cut(s) 565
PaqCI CACCTGC 1 cut(s) 1081
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 422, 561
PfeI GAWTC 5 cut(s) 189, 542, 580, 631, 1718
PkrI GCNGC 5 cut(s) 473, 847, 1036, 1350, 1570
Ple19I CGATCG 1 cut(s) 1323
PleI GAGTC 3 cut(s) 52, 672, 1126
PpsI GAGTC 3 cut(s) 52, 672, 1126
Ppu21I YACGTR 1 cut(s) 895
PscI ACATGT 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 1377
PsiI TTATAA 1 cut(s) 242
Psp124BI GAGCTC 2 cut(s) 71, 1014
Psp6I CCWGG 2 cut(s) 221, 1336
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 221, 1336
PspN4I GGNNCC 3 cut(s) 958, 1071, 1711
PspPI GGNCC 3 cut(s) 149, 725, 1426
PsrI GAACNNNNNNTAC 2 cut(s) 1036, 1068
PsuI RGATCY 2 cut(s) 869, 989
PvuI CGATCG 1 cut(s) 1323
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 4 cut(s) 926, 1143, 1304, 1491
RsaNI GTAC 4 cut(s) 925, 1142, 1303, 1490
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 2 cut(s) 71, 1014
SaqAI TTAA 6 cut(s) 270, 462, 681, 1377, 1413, 1544
SatI GCNGC 5 cut(s) 472, 846, 1035, 1349, 1569
Sau96I GGNCC 3 cut(s) 149, 725, 1426
ScaI AGTACT 1 cut(s) 1491
SchI GAGTC 3 cut(s) 53, 673, 1127
ScrFI CCNGG 2 cut(s) 223, 1338
SduI GDGCHC 3 cut(s) 71, 959, 1014
SexAI ACCWGGT 1 cut(s) 1336
SfaNI GCATC 5 cut(s) 756, 810, 1189, 1275, 1546
SfcI CTRYAG 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 565
SinI GGWCC 3 cut(s) 149, 725, 1426
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 3 cut(s) 1102, 1430, 1551
SmoI CTYRAG 3 cut(s) 1102, 1430, 1551
SpeI ACTAGT 1 cut(s) 601
Sse9I AATT 8 cut(s) 413, 648, 768, 783, 849, 1330, 1453, 1625
SsiI CCGC 1 cut(s) 1202
SspMI CTAG 1 cut(s) 602
SstI GAGCTC 2 cut(s) 71, 1014
StyD4I CCNGG 2 cut(s) 221, 1336
StyI CCWWGG 2 cut(s) 374, 1579
TaaI ACNGT 4 cut(s) 460, 478, 814, 1194
TaiI ACGT 2 cut(s) 897, 1093
TaqI TCGA 7 cut(s) 565, 694, 718, 949, 982, 1319, 1731
TasI AATT 8 cut(s) 413, 648, 768, 783, 849, 1330, 1453, 1625
TatI WGTACW 3 cut(s) 924, 1302, 1489
TfiI GAWTC 5 cut(s) 189, 542, 580, 631, 1718
Tru1I TTAA 6 cut(s) 270, 462, 681, 1377, 1413, 1544
Tru9I TTAA 6 cut(s) 270, 462, 681, 1377, 1413, 1544
TscAI CASTG 2 cut(s) 481, 649
TseFI GTSAC 2 cut(s) 48, 886
TseI GCWGC 5 cut(s) 471, 845, 1034, 1348, 1568
Tsp45I GTSAC 2 cut(s) 48, 886
TspDTI ATGAA 6 cut(s) 94, 426, 572, 1245, 1272, 1284
TspRI CASTG 2 cut(s) 481, 649
VpaK11BI GGWCC 3 cut(s) 149, 725, 1426
VspI ATTAAT 1 cut(s) 1377
XapI RAATTY 3 cut(s) 1330, 1453, 1625
XceI RCATGY 2 cut(s) 218, 597
XmiI GTMKAC 1 cut(s) 598
XmnI GAANNNNTTC 2 cut(s) 422, 561
XspI CTAG 1 cut(s) 602
ZrmI AGTACT 1 cut(s) 1491
Zsp2I ATGCAT 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.