Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419219.1

Orthogroup ID

OG0007093

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1367

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419219.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgcacatgtttggcaattgcaggattgatagatttgatgtaccacttaaagttgcaatattgtttggcttgcctgccctgtttggtatctggctgggtttaagcataactgggagtgttcttgtgggattgggctatgggtttttcactccttgggtttctacttttgaggcttttaggcatggcaatgagttgaagaagttcaaacattgtgttattgatggaacttggggaactgttaaaggaagctgtactgtagttagagactttgcagacatatgttaccactcgtacccactctacttgaaggagttgcgtgaatcccctgcttcagaagaagttaaaactctaaggttgattcatgtaccagcatgtatactagttggtgtgttggggctaatggtggagattcctctttacactgcaattgctgttgtgaagagtccatatatgctgtttaagggctggtatcgactgattcatgatctgattagtcgagaaggaccatttcttgaagtagcttgcatccctattgctggtttgacaatcctcatgtggccaattgtggttgttggaagcatcttactgacagttgtctccagcatttttgttggattatatgcagcagtggtagtatatcaggaaagatctttcaagagaggtgtgacttacgtgattgcaatggttgctgagtttgatgagtacacaaatgactggttatatcttcgagagggcaccatatttccgaagccccattatcgaaaaaaagttgtttctcaaccatcagagctttccgtccgaggaaggctggcagctggaggtaagctcagttttgctccaatggaggcacctgcaatgcatatgccaagtgtggccaattcaagatcagttagagaggctatacatgaagtaaaaatggtacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.44

Weight (kDa)

8.94

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37030
fragaria_vesca	FvH4_1g15860 FvH4_1g16000
malus_domestica	MD00G1044300.v1.1 MD02G1170500.v1.1 MD15G1282200.v1.1
prunus_persica	Prupe.7G134900_v2.0.a1 Prupe.7G134900_v2.0.a1
pyrus_communis	pycom02g13700 pycom15g24550
rosa_chinensis	RchiOBHm_Chr2g0105181
rosa_laevigata	RLG00000017408
rosa_multiflora	Rmu_co8419219.1_g000001 Rmu_sc0001170.1_g000007 Rmu_sc0006734.1_g000009
rosa_roxburghii	Rroxscaffold_2G00138390
rosa_rugosa	Rorug02G0126700 Rorug02G0126700 Rorug02G0126700 Rorug02G0126800
rosa_samantha	Rh2AG177500 Rh2BG185500 Rh2CG182000 Rh2DG183600
rosa_wichuraiana	Rw2G013930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	859
Acc36I	ACCTGC	1 cut(s)	859
AccB1I	GGYRCC	2 cut(s)	734, 847
AccI	GTMKAC	1 cut(s)	376
AcoI	YGGCCR	2 cut(s)	557, 873
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	6 cut(s)	42, 253, 293, 366, 704, 921
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	6 cut(s)	196, 205, 307, 515, 655, 882
AhlI	ACTAGT	1 cut(s)	379
AluBI	AGCT	5 cut(s)	249, 521, 790, 815, 826
AluI	AGCT	5 cut(s)	249, 521, 790, 815, 826
Alw26I	GTCTC	2 cut(s)	258, 601
AoxI	GGCC	2 cut(s)	557, 873
ApeKI	GCWGC	2 cut(s)	623, 812
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	737
BalI	TGGCCA	2 cut(s)	559, 875
BanI	GGYRCC	2 cut(s)	734, 847
BbvI	GCAGC	2 cut(s)	635, 824
BccI	CCATC	2 cut(s)	215, 790
BcoDI	GTCTC	2 cut(s)	258, 601
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	859
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	2 cut(s)	624, 813
BlsI	GCNGC	2 cut(s)	625, 814
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	2 cut(s)	736, 849
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	534, 588
BmuI	ACTGGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	593
BplI	GAGNNNNNCTC	2 cut(s)	810, 842
BpmI	CTGGAG	2 cut(s)	583, 837
BsaAI	YACGTR	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	152, 799
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	115, 719
Bse3DI	GCAATG	3 cut(s)	193, 687, 861
BseDI	CCNNGG	2 cut(s)	152, 799
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	3 cut(s)	193, 687, 861
BseMII	CTCAG	2 cut(s)	681, 841
BseNI	ACTGG	2 cut(s)	115, 719
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	2 cut(s)	635, 824
BseYI	CCCAGC	1 cut(s)	94
BshFI	GGCC	2 cut(s)	559, 875
BshNI	GGYRCC	2 cut(s)	734, 847
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	258, 601
BsnI	GGCC	2 cut(s)	559, 875
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	3 cut(s)	484, 647, 884
BspANI	GGCC	2 cut(s)	559, 875
BspCNI	CTCAG	2 cut(s)	682, 840
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	736, 849
BspMI	ACCTGC	1 cut(s)	859
BspT107I	GGYRCC	2 cut(s)	734, 847
BsrDI	GCAATG	3 cut(s)	193, 687, 861
BsrI	ACTGG	2 cut(s)	115, 719
BssECI	CCNNGG	2 cut(s)	152, 799
BssMI	GATC	3 cut(s)	484, 647, 884
BssNAI	GTATAC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	238, 256, 592
Bst6I	CTCTTC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	4 cut(s)	71, 75, 523, 810
BstDEI	CTNAG	3 cut(s)	350, 690, 827
BstF5I	GGATG	1 cut(s)	525
BstKTI	GATC	3 cut(s)	487, 650, 887
BstMAI	GTCTC	2 cut(s)	258, 601
BstMBI	GATC	3 cut(s)	484, 647, 884
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNSI	RCATGY	2 cut(s)	10, 375
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	737
BstV1I	GCAGC	2 cut(s)	635, 824
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BstZ17I	GTATAC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	559, 875
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	2 cut(s)	420, 633
BtsIMutI	CAGTG	2 cut(s)	420, 633
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	4 cut(s)	71, 75, 523, 810
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	6 cut(s)	41, 252, 292, 365, 703, 920
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	7 cut(s)	7, 182, 362, 372, 482, 553, 905
CviQI	GTAC	6 cut(s)	41, 252, 292, 365, 703, 920
DdeI	CTNAG	3 cut(s)	350, 690, 827
DpnI	GATC	3 cut(s)	486, 649, 886
DpnII	GATC	3 cut(s)	484, 647, 884
EaeI	YGGCCR	2 cut(s)	557, 873
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	861
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	7 cut(s)	10, 185, 365, 375, 485, 556, 908
FatI	CATG	7 cut(s)	6, 181, 361, 371, 481, 552, 904
FauNDI	CATATG	2 cut(s)	278, 861
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	624, 813
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	624, 813
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	2 cut(s)	624, 813
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	2 cut(s)	583, 837
HaeIII	GGCC	2 cut(s)	559, 875
Hin1II	CATG	7 cut(s)	10, 185, 365, 375, 485, 556, 908
HinfI	GANTC	5 cut(s)	320, 358, 409, 442, 478
Hpy166II	GTNNAC	2 cut(s)	377, 705
Hpy188I	TCNGA	5 cut(s)	334, 489, 747, 787, 800
Hpy188III	TCNNGA	7 cut(s)	482, 497, 512, 641, 655, 728, 882
Hpy8I	GTNNAC	2 cut(s)	377, 705
HpyAV	CCTTC	3 cut(s)	301, 494, 798
HpyCH4III	ACNGT	3 cut(s)	238, 256, 592
HpyCH4IV	ACGT	1 cut(s)	672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	350, 690, 827
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	7 cut(s)	10, 185, 365, 375, 485, 556, 908
Kzo9I	GATC	3 cut(s)	484, 647, 884
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	2 cut(s)	635, 824
LweI	GCATC	2 cut(s)	534, 588
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	281, 664
MalI	GATC	3 cut(s)	486, 649, 886
MboI	GATC	3 cut(s)	484, 647, 884
MboII	GAAGA	4 cut(s)	208, 347, 451, 716
MfeI	CAATTG	3 cut(s)	16, 426, 561
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	2 cut(s)	559, 875
MluCI	AATT	4 cut(s)	16, 426, 561, 877
MluNI	TGGCCA	2 cut(s)	559, 875
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	553, 592
MnlI	CCTC	9 cut(s)	163, 423, 560, 653, 724, 794, 812, 838, 889
Mox20I	TGGCCA	2 cut(s)	559, 875
Mph1103I	ATGCAT	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	200
MscI	TGGCCA	2 cut(s)	559, 875
MseI	TTAA	5 cut(s)	48, 101, 240, 342, 459
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	2 cut(s)	559, 875
MspA1I	CMGCKG	1 cut(s)	815
MunI	CAATTG	3 cut(s)	16, 426, 561
MwoI	GCNNNNNNNGC	1 cut(s)	686
NdeI	CATATG	2 cut(s)	278, 861
NdeII	GATC	3 cut(s)	484, 647, 884
NlaIII	CATG	7 cut(s)	10, 185, 365, 375, 485, 556, 908
NlaIV	GGNNCC	2 cut(s)	736, 849
NmuCI	GTSAC	1 cut(s)	664
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	2 cut(s)	10, 375
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	859
PciI	ACATGT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	320, 358, 409, 478
PkrI	GCNGC	2 cut(s)	625, 814
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Ppu21I	YACGTR	1 cut(s)	673
PscI	ACATGT	1 cut(s)	6
PshAI	GACNNNNGTC	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	736, 849
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	6 cut(s)	42, 253, 293, 366, 704, 921
RsaNI	GTAC	6 cut(s)	41, 252, 292, 365, 703, 920
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	5 cut(s)	48, 101, 240, 342, 459
SatI	GCNGC	2 cut(s)	624, 813
Sau3AI	GATC	3 cut(s)	484, 647, 884
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	2 cut(s)	534, 588
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	4 cut(s)	16, 426, 561, 877
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	238, 256, 592
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	4 cut(s)	472, 496, 727, 760
TasI	AATT	4 cut(s)	16, 426, 561, 877
TatI	WGTACW	2 cut(s)	251, 702
TfiI	GAWTC	4 cut(s)	320, 358, 409, 478
Tru1I	TTAA	5 cut(s)	48, 101, 240, 342, 459
Tru9I	TTAA	5 cut(s)	48, 101, 240, 342, 459
TscAI	CASTG	2 cut(s)	427, 633
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	2 cut(s)	623, 812
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	3 cut(s)	350, 470, 921
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	2 cut(s)	427, 633
VpaK11BI	GGWCC	1 cut(s)	503
XceI	RCATGY	2 cut(s)	10, 375
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.