Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007093

Physical Location & Seq

Genomic Coordinates Forward (+)

8140238 .. 8142848

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1044300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTTGCTTTTGTTGATTCACATTCCAGCATGTATTATGGTTGGTGTGTTGGGGCTAATCGTGGAGATTCCTGTTTACACTGCAATTGCAGTTGTAAAGAGTCCCTATATGCTGCTTAAGGGCTGGTATCGACTGATTCATGATCTGATTACTCGAGAAGGTCCATTTCTTGAACTAGCATGCATCCCTATTGCTGGTTTGACAATCCTTCTGTGGCCAATTGTGGTTGTTGCAAGTATTGTATTGGCAGTTTTCTCAAGCATTTTAATCGGATTGTATGCATCAGTTGTAGTATATCAGGAAAGATCTTTCAGGAAAGGTGTGGCGTACGTGGTTGCAATGGTGGCTGAATTTGATGAATACACGAATGACTGGCTGTATCTTCGAGAGGGAACAATCTTTCCAAAGCCCAAATATCGAAAAAGAGCTGTCGCTCAATCACCCGAGTTCTCTATTCGAGGAAATCAGCTGGCTACACTCAGTCCTGCTCCTATGGAAGCACCTGCAATGCTTATGCCAAGTATAGCCAACTCGAGATCAGTTAGAGACGTTATACAAGAAGTGAAAATTGTTCAGCCACAAACTGACCTCGATGAATGGTTGAAAGCAAAGAACAGCAACGAAGCATCCATTATCGGTGTTGGTCTGCCATGTTATTCATGCTTGCAGACTCTTCTCTGCTCCATCAGATCGAATTCAGATGGTTTACTGCTGCTTGATGACGTTGAAATTAACTACTTAAATAGACCGCATGAAAAATTGTGGGACTGGTTCTTTAATCCGATAATGGTCTTGAAGGAACAGATTAAGGTCATAAAATTGTCAGAGGGTGAGGTTAGATATTTGGAGAAAGTGGTTCTTTTTGGAACCAATAATCCACAACGCGTAGTGGCTTGGGATAACGGAAGTTTACTACCTCAAGACGCTCTAAGAGCTGCTCAAATCGAAGGCATTAGTAGAAGGATGATTGGAATGATGAGAAGTGTCTCAAAATTTCCCACTTACAGAAGGAAATTCCGGCACGTTGTCAAGGCTTTAGTCGCATATTCCTTGCCGAAGGAGGCTTCAATCGCATCCGGTTCTGTTAAATCTACCATCTCCAGTGAAGATGTTGTGCTGGATGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

42.14

Weight (kDa)

8.66

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37030
fragaria_vesca	FvH4_1g15860 FvH4_1g16000
malus_domestica	MD00G1044300.v1.1 MD02G1170500.v1.1 MD15G1282200.v1.1
prunus_persica	Prupe.7G134900_v2.0.a1 Prupe.7G134900_v2.0.a1
pyrus_communis	pycom02g13700 pycom15g24550
rosa_chinensis	RchiOBHm_Chr2g0105181
rosa_laevigata	RLG00000017408
rosa_multiflora	Rmu_co8419219.1_g000001 Rmu_sc0001170.1_g000007 Rmu_sc0006734.1_g000009
rosa_roxburghii	Rroxscaffold_2G00138390
rosa_rugosa	Rorug02G0126700 Rorug02G0126700 Rorug02G0126700 Rorug02G0126800
rosa_samantha	Rh2AG177500 Rh2BG185500 Rh2CG182000 Rh2DG183600
rosa_wichuraiana	Rw2G013930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
Acc36I	ACCTGC	1 cut(s)	511
AccII	CGCG	1 cut(s)	885
AciI	CCGC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	4 cut(s)	350, 694, 992, 1013
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflII	CTTAAG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	5 cut(s)	173, 604, 728, 796, 1068
AloI	GAACNNNNNNTCC	4 cut(s)	385, 417, 859, 891
AluBI	AGCT	3 cut(s)	428, 469, 935
AluI	AGCT	3 cut(s)	428, 469, 935
Alw26I	GTCTC	2 cut(s)	540, 991
Ama87I	CYCGRG	3 cut(s)	153, 443, 532
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	112, 712, 935
ApoI	RAATTY	4 cut(s)	350, 694, 992, 1013
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	432, 842
AvaI	CYCGRG	3 cut(s)	153, 443, 532
AvaII	GGWCC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	99, 699, 922
BccI	CCATC	3 cut(s)	692, 695, 1103
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcoDI	GTCTC	2 cut(s)	540, 991
BfaI	CTAG	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	511
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	3 cut(s)	113, 713, 936
BlsI	GCNGC	3 cut(s)	114, 714, 937
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	3 cut(s)	153, 443, 532
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	868
BmsI	GCATC	4 cut(s)	192, 290, 635, 1082
BpmI	CTGGAG	1 cut(s)	1084
BpuEI	CTTGAG	2 cut(s)	241, 903
BsaAI	YACGTR	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	1076
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	3 cut(s)	377, 773, 1101
Bse3DI	GCAATG	2 cut(s)	345, 513
BseGI	GGATG	5 cut(s)	183, 626, 969, 1073, 1126
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	345, 513
BseMII	CTCAG	1 cut(s)	493
BseNI	ACTGG	3 cut(s)	377, 773, 1101
BseXI	GCAGC	3 cut(s)	99, 699, 922
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	217
BsiHKCI	CYCGRG	3 cut(s)	153, 443, 532
BsiSI	CCGG	2 cut(s)	1018, 1077
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	87, 779
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	540, 991
BsmBI	CGTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	87, 779
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	3 cut(s)	153, 443, 532
Bsp143I	GATC	4 cut(s)	142, 305, 536, 689
BspACI	CCGC	1 cut(s)	749
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	885
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	868
BspMI	ACCTGC	1 cut(s)	511
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	345, 513
BsrI	ACTGG	3 cut(s)	377, 773, 1101
BssMI	GATC	4 cut(s)	142, 305, 536, 689
Bst6I	CTCTTC	1 cut(s)	678
BstAFI	CTTAAG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	181, 471, 665
BstDEI	CTNAG	2 cut(s)	479, 929
BstF5I	GGATG	5 cut(s)	183, 626, 969, 1073, 1126
BstFNI	CGCG	1 cut(s)	885
BstKTI	GATC	4 cut(s)	145, 308, 539, 692
BstMAI	GTCTC	2 cut(s)	540, 991
BstMBI	GATC	4 cut(s)	142, 305, 536, 689
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 932, 1040, 1070
BstNSI	RCATGY	2 cut(s)	33, 183
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	3 cut(s)	99, 699, 922
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	183, 626, 969, 1073, 1126
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 1108
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	3 cut(s)	181, 471, 665
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	6 cut(s)	30, 140, 180, 651, 660, 752
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	479, 929
DpnI	GATC	4 cut(s)	144, 307, 538, 691
DpnII	GATC	4 cut(s)	142, 305, 536, 689
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	161
Eco88I	CYCGRG	3 cut(s)	153, 443, 532
EcoRI	GAATTC	1 cut(s)	694
EcoT22I	ATGCAT	2 cut(s)	185, 283
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	6 cut(s)	33, 143, 183, 654, 663, 755
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	2 cut(s)	87, 779
FatI	CATG	6 cut(s)	29, 139, 179, 650, 659, 751
Fnu4HI	GCNGC	3 cut(s)	113, 713, 936
FokI	GGATG	4 cut(s)	170, 613, 976, 1060
Fsp4HI	GCNGC	3 cut(s)	113, 713, 936
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	3 cut(s)	113, 713, 936
GsuI	CTGGAG	1 cut(s)	1084
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	2 cut(s)	1018, 1077
HgaI	GACGC	1 cut(s)	932
Hin1II	CATG	6 cut(s)	33, 143, 183, 654, 663, 755
HinfI	GANTC	5 cut(s)	16, 67, 100, 136, 670
HpaII	CCGG	2 cut(s)	1018, 1077
HphI	GGTGA	2 cut(s)	432, 842
Hpy166II	GTNNAC	3 cut(s)	76, 707, 911
Hpy188I	TCNGA	6 cut(s)	147, 272, 689, 700, 783, 826
Hpy188III	TCNNGA	9 cut(s)	140, 155, 170, 299, 313, 386, 534, 793, 920
Hpy8I	GTNNAC	3 cut(s)	76, 707, 911
HpyAV	CCTTC	7 cut(s)	152, 218, 790, 941, 954, 1002, 1051
HpyCH4IV	ACGT	4 cut(s)	330, 549, 723, 1023
HpyCH4V	TGCA	8 cut(s)	83, 89, 183, 233, 281, 338, 506, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 932, 1040, 1070
HpyF3I	CTNAG	2 cut(s)	479, 929
HpySE526I	ACGT	4 cut(s)	330, 549, 723, 1023
Hsp92II	CATG	6 cut(s)	33, 143, 183, 654, 663, 755
Kzo9I	GATC	4 cut(s)	142, 305, 536, 689
LmnI	GCTCC	2 cut(s)	493, 686
Lsp1109I	GCAGC	3 cut(s)	99, 699, 922
LweI	GCATC	4 cut(s)	192, 290, 635, 1082
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	4 cut(s)	330, 549, 723, 1023
MalI	GATC	4 cut(s)	144, 307, 538, 691
MboI	GATC	4 cut(s)	142, 305, 536, 689
MboII	GAAGA	3 cut(s)	374, 665, 1118
MfeI	CAATTG	2 cut(s)	84, 219
MflI	RGATCY	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	217
MluI	ACGCGT	1 cut(s)	883
MluNI	TGGCCA	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	109, 664
MnlI	CCTC	7 cut(s)	382, 452, 599, 820, 826, 927, 1054
Mox20I	TGGCCA	1 cut(s)	217
Mph1103I	ATGCAT	2 cut(s)	185, 283
MscI	TGGCCA	1 cut(s)	217
MseI	TTAA	8 cut(s)	117, 266, 732, 740, 777, 807, 1086, 1129
Msp20I	TGGCCA	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	469
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	1018, 1077
MunI	CAATTG	2 cut(s)	84, 219
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	4 cut(s)	344, 932, 1040, 1070
NdeII	GATC	4 cut(s)	142, 305, 536, 689
NlaIII	CATG	6 cut(s)	33, 143, 183, 654, 663, 755
NlaIV	GGNNCC	1 cut(s)	868
NsiI	ATGCAT	2 cut(s)	185, 283
NspI	RCATGY	2 cut(s)	33, 183
PaeI	GCATGC	1 cut(s)	183
PaeR7I	CTCGAG	2 cut(s)	153, 532
PagI	TCATGA	1 cut(s)	139
PaqCI	CACCTGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	16, 67, 136
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	114, 714, 937
PleI	GAGTC	2 cut(s)	108, 664
PpsI	GAGTC	2 cut(s)	108, 664
Ppu21I	YACGTR	1 cut(s)	331
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	8 cut(s)	117, 266, 732, 740, 777, 807, 1086, 1129
SatI	GCNGC	3 cut(s)	113, 713, 936
Sau3AI	GATC	4 cut(s)	142, 305, 536, 689
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	109, 664
SfaNI	GCATC	4 cut(s)	192, 290, 635, 1082
Sfr274I	CTCGAG	2 cut(s)	153, 532
SinI	GGWCC	1 cut(s)	161
SlaI	CTCGAG	2 cut(s)	153, 532
SmlI	CTYRAG	5 cut(s)	116, 153, 256, 532, 918
SmoI	CTYRAG	5 cut(s)	116, 153, 256, 532, 918
SphI	GCATGC	1 cut(s)	183
SsiI	CCGC	1 cut(s)	749
SspMI	CTAG	1 cut(s)	176
TaiI	ACGT	4 cut(s)	333, 552, 726, 1026
TaqI	TCGA	9 cut(s)	130, 154, 385, 418, 457, 533, 591, 692, 945
TfiI	GAWTC	3 cut(s)	16, 67, 136
Tru1I	TTAA	8 cut(s)	117, 266, 732, 740, 777, 807, 1086, 1129
Tru9I	TTAA	8 cut(s)	117, 266, 732, 740, 777, 807, 1086, 1129
TscAI	CASTG	2 cut(s)	85, 1108
TseI	GCWGC	3 cut(s)	112, 712, 935
TspDTI	ATGAA	5 cut(s)	128, 372, 609, 648, 768
TspGWI	ACGGA	1 cut(s)	918
TspRI	CASTG	2 cut(s)	85, 1108
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	4 cut(s)	350, 694, 992, 1013
XceI	RCATGY	2 cut(s)	33, 183
XhoI	CTCGAG	2 cut(s)	153, 532
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	2 cut(s)	185, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.