Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007093

Physical Location & Seq

Genomic Coordinates Reverse (-)

16232548 .. 16235662

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGCACATGTTTGGCAATTGCAGGATTGATAGGTTTGATGTACCACTTAAAGTTGCAATATTGTTTGGCTTGCCTGCCCTGTTTGGTATCTGGCTGGGTTTAAGCATAGCTGGGAGTGTTCTTGTGGGATTGGGCTATGGATTTTTCACTCCTTGGGTTTCTACTTTTGAGGCTTTTAGGCATGGCAATGAGTTGAAGAAGTTCAAACATTGTGTTATTGATGGAACTTGGGGAACTGTTAAAGGAAGCTGTACTGTAGTTAGAGACTTTGCAGACATATGTTACCACTCGTACCCGCTCTACTTGAAGGAGTTGCGTGAATCCCCTGCTTCAGAAGAAGTTAAAACTCTAAGGTTGATTCATGTACCAGCATGTATACTAGTTGGTGTGTTGGGGCTAATGGTGGAGATTCCTCTTTACACTGCAATTGCTGTTGTGAAGAGTCCATATATGCTGTTTAAGGGCTGGTATCGACTGATTCATGATCTGATTAGTCGAGAAGGACCATTTCTTGAAGTAGCTTGCATCCCTATTGCTGGTTTGACAATCCTCATGTGGCCAATTGTGGTTGTTGGAAGCATCTTACTGACAGTTGTCTCCAGCATTTTTGTTGGATTATATGCAGCAGTGGTAGTATATCAGGAAAGATCTTTCAAGAGAGGCGTGACTTACGTGATTGCAATGGTTGCTGAGTTTGATGAGTACACAAATGACTGGTTATATCTTCGAGAGGGCACCATCTTTCCGAAGCCCCATTATCGAAAAAAAGTTGTTTCTCAACCATCAGAGCTTTCTGTCCGAGGAAGGCTGGCAGCTGGAGGTAAGCTCAGTTCTGCTCCAATGGAGGCACCTGCAATGCATATGCCAAGTGCGGCCAATTCAAGATCTGTTAGAGAGGCTATACATGAAGTAAAAATGGTACAGATATGGGGACATATGATGAGATCCTGCGAACTGAGGGCTAAGCAACTGTTGGATGCAGAAGTAATAACCCCAAGTGATCTCTATGAATGGTTGAAATCTGAGAACAGCAATGAAGGGAGCATCATTGGTGTTGGTTTGCCTTGTTATTCATTCTTGCACACACTTCTCTGCTCCATCAGATCAAATTCGGCTGGTTTGCTGCTGCTTGATGATGTTGAAGTTACCTATTTGAATAGACCACATGACAAACTGATGGACTGGTTCTTTAATCCTATAATGGTCCTGAAGGAACAGGTCAAGGTCATAAAATTGGAAGAGGGTGAGGTGAGATTTCTGGAGAAAGTACTACTTTTCAGAAGCAATACACAGCGCATGGAGGCTTGGGATAATGGAAGTTTAATACCTCAAGATGCTCTAAGAGCTGCTCAAATCGAAGGCATTAGTAGAAGGATGATTGGGATGATGAGAGGTGTCTCAAAACTTCCCACTTATAGGAGGAGATTTCACCAAGTTGTGAAGAACTTGATCACCTATTCCATACAGAAGGAGTCTACTATTGCACCCAGTTCCATCGAATCTACCTCCATCGAAGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

507

Amino Acids

57.15

Weight (kDa)

8.58

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37030
fragaria_vesca	FvH4_1g15860 FvH4_1g16000
malus_domestica	MD00G1044300.v1.1 MD02G1170500.v1.1 MD15G1282200.v1.1
prunus_persica	Prupe.7G134900_v2.0.a1 Prupe.7G134900_v2.0.a1
pyrus_communis	pycom02g13700 pycom15g24550
rosa_chinensis	RchiOBHm_Chr2g0105181
rosa_laevigata	RLG00000017408
rosa_multiflora	Rmu_co8419219.1_g000001 Rmu_sc0001170.1_g000007 Rmu_sc0006734.1_g000009
rosa_roxburghii	Rroxscaffold_2G00138390
rosa_rugosa	Rorug02G0126700 Rorug02G0126700 Rorug02G0126700 Rorug02G0126800
rosa_samantha	Rh2AG177500 Rh2BG185500 Rh2CG182000 Rh2DG183600
rosa_wichuraiana	Rw2G013930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	859
Acc36I	ACCTGC	1 cut(s)	859
AccB1I	GGYRCC	2 cut(s)	734, 847
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	2 cut(s)	376, 1475
AciI	CCGC	2 cut(s)	296, 872
AclWI	GGATC	1 cut(s)	939
AcoI	YGGCCR	2 cut(s)	557, 873
AcsI	RAATTY	1 cut(s)	1108
AcuI	CTGAAG	2 cut(s)	315, 1229
AfaI	GTAC	7 cut(s)	42, 253, 293, 366, 704, 921, 1269
AfiI	CCNNNNNNNGG	2 cut(s)	536, 1416
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	9 cut(s)	196, 205, 307, 515, 655, 882, 1018, 1142, 1156
AhlI	ACTAGT	1 cut(s)	379
AluBI	AGCT	7 cut(s)	110, 249, 521, 790, 815, 826, 1346
AluI	AGCT	7 cut(s)	110, 249, 521, 790, 815, 826, 1346
Alw26I	GTCTC	3 cut(s)	258, 601, 1402
AlwI	GGATC	1 cut(s)	939
AoxI	GGCC	2 cut(s)	557, 873
ApeKI	GCWGC	5 cut(s)	623, 812, 1123, 1126, 1346
ApoI	RAATTY	1 cut(s)	1108
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	1296
AspS9I	GGNCC	2 cut(s)	503, 1204
AsuHPI	GGTGA	4 cut(s)	1256, 1261, 1421, 1444
AvaII	GGWCC	2 cut(s)	503, 1204
BaeGI	GKGCMC	1 cut(s)	737
BalI	TGGCCA	1 cut(s)	559
BanI	GGYRCC	2 cut(s)	734, 847
BbvI	GCAGC	5 cut(s)	635, 824, 1110, 1113, 1333
BccI	CCATC	7 cut(s)	215, 746, 790, 1106, 1171, 1502, 1517
BclI	TGATCA	1 cut(s)	1449
BcoDI	GTCTC	3 cut(s)	258, 601, 1402
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	859
BglII	AGATCT	2 cut(s)	647, 884
BisI	GCNGC	6 cut(s)	624, 813, 873, 1124, 1127, 1347
BlpI	GCTNAGC	1 cut(s)	963
BlsI	GCNGC	6 cut(s)	625, 814, 874, 1125, 1128, 1348
BmcAI	AGTACT	1 cut(s)	1269
Bme18I	GGWCC	2 cut(s)	503, 1204
BmgT120I	GGNCC	2 cut(s)	503, 1204
BmiI	GGNNCC	2 cut(s)	736, 849
BmrI	ACTGGG	1 cut(s)	1482
BmsI	GCATC	5 cut(s)	534, 588, 967, 1053, 1324
BmuI	ACTGGG	1 cut(s)	1482
BoxI	GACNNNNGTC	1 cut(s)	593
BplI	GAGNNNNNCTC	2 cut(s)	810, 842
BpmI	CTGGAG	3 cut(s)	583, 837, 1280
Bpu1102I	GCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	1314
BsaAI	YACGTR	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	152, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 1416
Bse1I	ACTGG	3 cut(s)	719, 1187, 1488
Bse3DI	GCAATG	4 cut(s)	193, 687, 861, 1039
BseDI	CCNNGG	2 cut(s)	152, 799
BseGI	GGATG	4 cut(s)	525, 982, 1380, 1389
BseLI	CCNNNNNNNGG	2 cut(s)	536, 1416
BseMI	GCAATG	4 cut(s)	193, 687, 861, 1039
BseMII	CTCAG	4 cut(s)	681, 841, 947, 1014
BseNI	ACTGG	3 cut(s)	719, 1187, 1488
BseRI	GAGGAG	1 cut(s)	1435
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	5 cut(s)	635, 824, 1110, 1113, 1333
BseYI	CCCAGC	2 cut(s)	94, 110
BshFI	GGCC	2 cut(s)	559, 875
BshNI	GGYRCC	2 cut(s)	734, 847
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	2 cut(s)	536, 1416
BsmAI	GTCTC	3 cut(s)	258, 601, 1402
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	2 cut(s)	559, 875
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp143I	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
Bsp1720I	GCTNAGC	1 cut(s)	963
BspACI	CCGC	2 cut(s)	296, 872
BspANI	GGCC	2 cut(s)	559, 875
BspCNI	CTCAG	4 cut(s)	682, 840, 948, 1015
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	736, 849
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	1 cut(s)	939
BspT107I	GGYRCC	2 cut(s)	734, 847
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	4 cut(s)	193, 687, 861, 1039
BsrI	ACTGG	3 cut(s)	719, 1187, 1488
BssECI	CCNNGG	2 cut(s)	152, 799
BssMI	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
BssNAI	GTATAC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	377
Bst4CI	ACNGT	4 cut(s)	238, 256, 592, 972
Bst6I	CTCTTC	2 cut(s)	434, 1233
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	4 cut(s)	71, 75, 523, 810
BstDEI	CTNAG	7 cut(s)	350, 690, 827, 956, 963, 1023, 1340
BstF5I	GGATG	4 cut(s)	525, 982, 1380, 1389
BstHHI	GCGC	1 cut(s)	1296
BstKTI	GATC	7 cut(s)	487, 650, 887, 947, 1003, 1106, 1452
BstMAI	GTCTC	3 cut(s)	258, 601, 1402
BstMBI	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 1343
BstNSI	RCATGY	2 cut(s)	10, 375
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	737
BstV1I	GCAGC	5 cut(s)	635, 824, 1110, 1113, 1333
BstX2I	RGATCY	3 cut(s)	647, 884, 944
BstYI	RGATCY	3 cut(s)	647, 884, 944
BstZ17I	GTATAC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	559, 875
BtsCI	GGATG	4 cut(s)	525, 982, 1380, 1389
BtsI	GCAGTG	2 cut(s)	420, 633
BtsIMutI	CAGTG	2 cut(s)	420, 633
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	4 cut(s)	71, 75, 523, 810
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	1296
Cfr13I	GGNCC	2 cut(s)	503, 1204
Csp6I	GTAC	7 cut(s)	41, 252, 292, 365, 703, 920, 1268
CviAII	CATG	9 cut(s)	7, 182, 362, 372, 482, 553, 905, 1166, 1297
CviQI	GTAC	7 cut(s)	41, 252, 292, 365, 703, 920, 1268
DdeI	CTNAG	7 cut(s)	350, 690, 827, 956, 963, 1023, 1340
DpnI	GATC	7 cut(s)	486, 649, 886, 946, 1002, 1105, 1451
DpnII	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
EaeI	YGGCCR	2 cut(s)	557, 873
Eam1104I	CTCTTC	2 cut(s)	434, 1233
EarI	CTCTTC	2 cut(s)	434, 1233
Eco130I	CCWWGG	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	503, 1204
Eco57I	CTGAAG	2 cut(s)	315, 1229
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	861
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	9 cut(s)	10, 185, 365, 375, 485, 556, 908, 1169, 1300
FalI	AAGNNNNNCTT	2 cut(s)	1257, 1289
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	9 cut(s)	6, 181, 361, 371, 481, 552, 904, 1165, 1296
FauI	CCCGC	1 cut(s)	303
FauNDI	CATATG	3 cut(s)	278, 861, 936
FbaI	TGATCA	1 cut(s)	1449
FblI	GTMKAC	2 cut(s)	376, 1475
Fnu4HI	GCNGC	6 cut(s)	624, 813, 873, 1124, 1127, 1347
FokI	GGATG	4 cut(s)	512, 989, 1387, 1396
Fsp4HI	GCNGC	6 cut(s)	624, 813, 873, 1124, 1127, 1347
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	1295
GluI	GCNGC	6 cut(s)	624, 813, 873, 1124, 1127, 1347
GsaI	CCCAGC	2 cut(s)	98, 114
GsuI	CTGGAG	3 cut(s)	583, 837, 1280
HaeIII	GGCC	2 cut(s)	559, 875
HhaI	GCGC	1 cut(s)	1296
Hin1II	CATG	9 cut(s)	10, 185, 365, 375, 485, 556, 908, 1169, 1300
Hin6I	GCGC	1 cut(s)	1294
HinP1I	GCGC	1 cut(s)	1294
HinfI	GANTC	7 cut(s)	320, 358, 409, 442, 478, 1472, 1499
HphI	GGTGA	4 cut(s)	1256, 1261, 1421, 1444
Hpy166II	GTNNAC	3 cut(s)	377, 705, 1476
Hpy188I	TCNGA	8 cut(s)	334, 489, 747, 787, 800, 1024, 1103, 1280
Hpy8I	GTNNAC	3 cut(s)	377, 705, 1476
HpyAV	CCTTC	8 cut(s)	301, 494, 798, 1031, 1204, 1352, 1365, 1462
HpyCH4III	ACNGT	4 cut(s)	238, 256, 592, 972
HpyCH4IV	ACGT	1 cut(s)	672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 1343
HpyF3I	CTNAG	7 cut(s)	350, 690, 827, 956, 963, 1023, 1340
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	9 cut(s)	10, 185, 365, 375, 485, 556, 908, 1169, 1300
HspAI	GCGC	1 cut(s)	1294
Ksp22I	TGATCA	1 cut(s)	1449
Kzo9I	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
LmnI	GCTCC	3 cut(s)	841, 1041, 1100
Lsp1109I	GCAGC	5 cut(s)	635, 824, 1110, 1113, 1333
LweI	GCATC	5 cut(s)	534, 588, 967, 1053, 1324
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	3 cut(s)	281, 664, 1144
MalI	GATC	7 cut(s)	486, 649, 886, 946, 1002, 1105, 1451
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
MboII	GAAGA	6 cut(s)	208, 347, 451, 716, 1250, 1453
MfeI	CAATTG	3 cut(s)	16, 426, 561
MflI	RGATCY	3 cut(s)	647, 884, 944
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	6 cut(s)	16, 426, 561, 877, 1108, 1232
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	2 cut(s)	451, 1481
MmeI	TCCRAC	3 cut(s)	553, 592, 954
Mox20I	TGGCCA	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	7 cut(s)	48, 101, 240, 342, 459, 1191, 1322
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	815
MunI	CAATTG	3 cut(s)	16, 426, 561
MwoI	GCNNNNNNNGC	2 cut(s)	686, 1343
NdeI	CATATG	3 cut(s)	278, 861, 936
NdeII	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
NlaIII	CATG	9 cut(s)	10, 185, 365, 375, 485, 556, 908, 1169, 1300
NlaIV	GGNNCC	2 cut(s)	736, 849
NmuCI	GTSAC	1 cut(s)	664
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	2 cut(s)	10, 375
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	859
PciI	ACATGT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	5 cut(s)	320, 358, 409, 478, 1499
PkrI	GCNGC	6 cut(s)	625, 814, 874, 1125, 1128, 1348
PleI	GAGTC	2 cut(s)	450, 1480
PpsI	GAGTC	2 cut(s)	450, 1480
Ppu21I	YACGTR	1 cut(s)	673
PscI	ACATGT	1 cut(s)	6
PshAI	GACNNNNGTC	1 cut(s)	593
PspFI	CCCAGC	2 cut(s)	94, 110
PspN4I	GGNNCC	2 cut(s)	736, 849
PspPI	GGNCC	2 cut(s)	503, 1204
PsrI	GAACNNNNNNTAC	2 cut(s)	814, 846
PsuI	RGATCY	3 cut(s)	647, 884, 944
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	7 cut(s)	42, 253, 293, 366, 704, 921, 1269
RsaNI	GTAC	7 cut(s)	41, 252, 292, 365, 703, 920, 1268
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	7 cut(s)	48, 101, 240, 342, 459, 1191, 1322
SatI	GCNGC	6 cut(s)	624, 813, 873, 1124, 1127, 1347
Sau3AI	GATC	7 cut(s)	484, 647, 884, 944, 1000, 1103, 1449
Sau96I	GGNCC	2 cut(s)	503, 1204
ScaI	AGTACT	1 cut(s)	1269
SchI	GAGTC	2 cut(s)	451, 1481
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	5 cut(s)	534, 588, 967, 1053, 1324
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	503, 1204
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	1329
SmoI	CTYRAG	1 cut(s)	1329
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	6 cut(s)	16, 426, 561, 877, 1108, 1232
SsiI	CCGC	2 cut(s)	296, 872
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	4 cut(s)	238, 256, 592, 972
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	7 cut(s)	472, 496, 727, 760, 1356, 1497, 1512
TasI	AATT	6 cut(s)	16, 426, 561, 877, 1108, 1232
TatI	WGTACW	3 cut(s)	251, 702, 1267
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	5 cut(s)	320, 358, 409, 478, 1499
Tru1I	TTAA	7 cut(s)	48, 101, 240, 342, 459, 1191, 1322
Tru9I	TTAA	7 cut(s)	48, 101, 240, 342, 459, 1191, 1322
TscAI	CASTG	2 cut(s)	427, 633
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	5 cut(s)	623, 812, 1123, 1126, 1346
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	6 cut(s)	350, 470, 921, 1023, 1050, 1062
TspRI	CASTG	2 cut(s)	427, 633
VpaK11BI	GGWCC	2 cut(s)	503, 1204
XapI	RAATTY	1 cut(s)	1108
XceI	RCATGY	2 cut(s)	10, 375
XmiI	GTMKAC	2 cut(s)	376, 1475
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	1269
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.